Wall clock time and date at job start Tue Mar 31 2020 07:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47250 * 2 1 4 4 C 1.50702 * 109.47008 * 119.99555 * 2 1 3 5 5 H 1.08009 * 119.99840 * 94.99485 * 4 2 1 6 6 C 1.37876 * 120.00225 * 274.99680 * 4 2 1 7 7 N 1.31508 * 120.00096 * 5.09489 * 6 4 2 8 8 Si 1.86800 * 120.00059 * 185.09865 * 6 4 2 9 9 H 1.48498 * 109.47322 * 179.97438 * 8 6 4 10 10 H 1.48508 * 109.47092 * 299.99740 * 8 6 4 11 11 H 1.48497 * 109.47501 * 59.99592 * 8 6 4 12 12 N 1.46504 * 109.47082 * 239.99480 * 2 1 3 13 13 C 1.46496 * 120.00002 * 300.00098 * 12 2 1 14 14 C 1.34776 * 119.99626 * 120.00019 * 12 2 1 15 15 O 1.21618 * 119.99952 * 5.52384 * 14 12 2 16 16 C 1.47418 * 119.99792 * 185.51329 * 14 12 2 17 17 N 1.36063 * 126.44907 * 5.85650 * 16 14 12 18 18 C 1.29937 * 108.47772 * 179.97438 * 17 16 14 19 19 O 1.34042 * 109.24244 * 0.02562 * 18 17 16 20 20 C 1.34257 * 108.22901 * 359.72975 * 19 18 17 21 21 C 1.50703 * 126.52767 * 180.26210 * 20 19 18 22 22 H 1.08997 * 109.82060 * 195.89170 * 21 20 19 23 23 C 1.54381 * 109.82985 * 75.00689 * 21 20 19 24 24 C 1.55450 * 102.18527 * 219.18189 * 23 21 20 25 25 C 1.54951 * 100.98937 * 34.03862 * 24 23 21 26 26 O 1.43239 * 109.83015 * 316.77728 * 21 20 19 27 27 H 1.09006 * 109.47430 * 175.04929 * 1 2 3 28 28 H 1.09005 * 109.47486 * 295.05003 * 1 2 3 29 29 H 1.09004 * 109.47056 * 55.05171 * 1 2 3 30 30 H 0.97004 * 120.00128 * 355.00497 * 7 6 4 31 31 H 1.08995 * 109.46833 * 95.62759 * 13 12 2 32 32 H 1.09000 * 109.47274 * 215.62830 * 13 12 2 33 33 H 1.08997 * 109.47245 * 335.62545 * 13 12 2 34 34 H 1.08001 * 125.37491 * 180.02562 * 18 17 16 35 35 H 1.09005 * 110.84771 * 337.31585 * 23 21 20 36 36 H 1.08999 * 110.84988 * 100.93634 * 23 21 20 37 37 H 1.08997 * 111.06226 * 276.11816 * 24 23 21 38 38 H 1.09000 * 111.18175 * 152.00396 * 24 23 21 39 39 H 1.08996 * 110.30877 * 204.69166 * 25 24 23 40 40 H 1.09005 * 110.30788 * 82.52060 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.2890 -1.7583 1.1821 6 6 2.1640 -0.0225 2.4182 7 7 1.7578 1.2254 2.5039 8 14 2.9195 -0.8629 3.9055 9 1 2.9479 0.0848 5.0484 10 1 2.1071 -2.0521 4.2679 11 1 4.3047 -1.2896 3.5825 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0933 -1.4278 14 6 2.7931 -0.0358 -2.0833 15 8 3.1699 1.0953 -1.8429 16 6 3.1841 -0.6905 -3.3449 17 7 2.7510 -1.8987 -3.7967 18 6 3.3155 -2.1363 -4.9426 19 8 4.1162 -1.1099 -5.2619 20 6 4.0417 -0.1977 -4.2797 21 6 4.7715 1.1196 -4.2215 22 1 4.7428 1.5134 -3.2056 23 6 4.1151 2.1252 -5.1918 24 6 5.3487 2.8628 -5.7838 25 6 6.3910 1.7167 -5.8156 26 8 6.1311 0.9405 -4.6352 27 1 -0.3634 -1.0239 -0.0887 28 1 -0.3634 0.4351 0.9310 29 1 -0.3633 0.5887 -0.8424 30 1 1.4327 1.6850 1.7139 31 1 0.7944 -2.1450 -2.0825 32 1 2.5033 -2.6070 -1.8972 33 1 1.4320 -2.5714 -0.4763 34 1 3.1635 -3.0211 -5.5430 35 1 3.5622 1.6051 -5.9740 36 1 3.4685 2.8181 -4.6534 37 1 5.6734 3.6711 -5.1287 38 1 5.1416 3.2333 -6.7878 39 1 7.4017 2.1236 -5.7858 40 1 6.2544 1.1057 -6.7079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339289876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:36 Heat of formation + Delta-G solvation = -74.693397 kcal Electronic energy + Delta-G solvation = -24460.086898 eV Core-core repulsion = 20855.121504 eV Total energy + Delta-G solvation = -3604.965393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.54762 -40.75482 -40.42721 -37.43882 -36.06382 -34.79583 -33.44466 -32.63461 -31.43336 -29.24260 -27.74230 -27.01324 -25.52317 -24.42264 -23.15194 -22.77164 -22.07303 -20.80047 -18.87678 -18.72970 -17.98669 -17.85649 -17.68610 -17.25052 -16.64805 -16.22172 -16.04992 -15.63166 -15.23798 -14.88294 -14.73564 -14.57691 -14.19869 -14.05791 -13.52167 -13.37377 -13.28275 -13.01592 -12.91468 -12.84159 -12.59987 -12.40454 -12.29111 -12.17270 -11.98156 -11.93119 -11.63898 -11.04267 -10.89578 -10.86997 -10.57447 -10.12365 -9.38754 -8.65710 -6.40707 -0.08423 1.05920 1.45087 1.51848 1.60429 1.79240 2.08863 2.21043 2.55765 2.71037 3.04079 3.18459 3.28987 3.38825 3.69778 3.79751 4.01982 4.12057 4.26326 4.31385 4.43364 4.46110 4.56931 4.63120 4.67298 4.70503 4.75944 4.79503 4.83604 4.90524 4.92837 5.11140 5.13140 5.20569 5.30047 5.67401 5.78715 5.84772 6.14127 6.37869 6.48869 6.63195 7.11995 7.41027 8.70821 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019150 B = 0.004525 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.787036 B = 6186.125836 C = 6762.962048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.240 3.760 3 H 0.022 0.978 4 C -0.611 4.611 5 H 0.056 0.944 6 C -0.025 4.025 7 N -0.929 5.929 8 Si 1.117 2.883 9 H -0.283 1.283 10 H -0.262 1.262 11 H -0.279 1.279 12 N -0.579 5.579 13 C 0.100 3.900 14 C 0.572 3.428 15 O -0.585 6.585 16 C -0.076 4.076 17 N -0.484 5.484 18 C 0.199 3.801 19 O -0.188 6.188 20 C 0.025 3.975 21 C 0.153 3.847 22 H 0.108 0.892 23 C -0.141 4.141 24 C -0.143 4.143 25 C 0.038 3.962 26 O -0.392 6.392 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.032 0.968 30 H 0.257 0.743 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.313 0.687 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.870 -4.435 -21.341 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.138 3.862 3 H 0.040 0.960 4 C -0.650 4.650 5 H 0.074 0.926 6 C -0.224 4.224 7 N -0.566 5.566 8 Si 0.938 3.062 9 H -0.209 1.209 10 H -0.187 1.187 11 H -0.205 1.205 12 N -0.307 5.307 13 C -0.042 4.042 14 C 0.360 3.640 15 O -0.468 6.468 16 C -0.195 4.195 17 N -0.213 5.213 18 C -0.029 4.029 19 O -0.074 6.074 20 C -0.033 4.033 21 C 0.095 3.905 22 H 0.125 0.875 23 C -0.178 4.178 24 C -0.180 4.180 25 C -0.038 4.038 26 O -0.312 6.312 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.328 0.672 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.093 -4.199 -19.192 20.295 hybrid contribution -0.316 0.336 -1.683 1.745 sum 4.777 -3.863 -20.875 21.760 Atomic orbital electron populations 1.21940 0.96737 1.00802 0.99222 1.18885 0.91673 0.93071 0.82525 0.95961 1.22376 1.48312 0.98083 0.96191 0.92598 1.27267 0.94538 0.96057 1.04587 1.70902 1.41038 1.12677 1.31937 0.82938 0.76123 0.74953 0.72155 1.20858 1.18679 1.20527 1.48090 1.47579 1.13463 1.21564 1.21812 1.01499 0.80045 1.00821 1.17374 0.78980 0.85022 0.82590 1.90668 1.57191 1.20367 1.78535 1.21310 1.05001 0.95074 0.98120 1.70967 1.25671 1.13102 1.11531 1.29496 0.87224 0.92980 0.93217 1.84386 1.54897 1.26209 1.41941 1.24142 0.98572 0.93540 0.87004 1.21592 0.81243 0.85831 1.01871 0.87472 1.23184 0.99606 0.97127 0.97933 1.23339 0.92713 0.98021 1.03944 1.23783 1.00902 0.91790 0.87298 1.88514 1.25967 1.70479 1.46230 0.92183 0.93742 0.94884 0.93273 0.91967 0.89913 0.91819 0.67201 0.89300 0.89371 0.89637 0.86355 0.87384 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 9.15 71.98 0.66 -5.45 16 2 C 0.24 12.96 2.26 44.24 0.10 13.06 16 3 H 0.02 1.40 5.69 -2.39 -0.01 1.38 16 4 C -0.61 -34.88 8.10 25.60 0.21 -34.68 16 5 H 0.06 3.11 6.75 -2.91 -0.02 3.09 16 6 C -0.03 -1.47 5.45 84.66 0.46 -1.00 16 7 N -0.93 -57.95 13.63 21.45 0.29 -57.66 16 8 Si 1.12 51.13 29.91 68.60 2.05 53.18 16 9 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 10 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 12 N -0.58 -27.45 2.75 -830.70 -2.29 -29.73 16 13 C 0.10 3.87 8.14 127.77 1.04 4.91 16 14 C 0.57 26.96 7.66 86.66 0.66 27.63 16 15 O -0.58 -30.93 13.96 -4.09 -0.06 -30.99 16 16 C -0.08 -2.86 6.60 40.41 0.27 -2.59 16 17 N -0.48 -14.45 8.11 -305.16 -2.47 -16.93 16 18 C 0.20 3.93 13.19 130.52 1.72 5.65 16 19 O -0.19 -4.67 10.73 0.52 0.01 -4.67 16 20 C 0.03 0.82 6.19 25.19 0.16 0.97 16 21 C 0.15 4.77 3.73 30.32 0.11 4.89 16 22 H 0.11 4.17 5.94 -2.39 -0.01 4.15 16 23 C -0.14 -3.22 6.55 31.91 0.21 -3.01 16 24 C -0.14 -2.29 7.16 32.10 0.23 -2.06 16 25 C 0.04 0.69 7.78 72.65 0.57 1.25 16 26 O -0.39 -11.45 11.00 -148.91 -1.64 -13.09 16 27 H 0.06 2.59 7.51 -2.38 -0.02 2.57 16 28 H 0.04 2.24 7.90 -2.38 -0.02 2.22 16 29 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.26 16.42 6.44 -92.71 -0.60 15.83 16 31 H 0.06 2.15 8.12 -2.39 -0.02 2.13 16 32 H 0.08 3.00 5.94 -2.39 -0.01 2.99 16 33 H 0.06 2.52 6.72 -2.39 -0.02 2.50 16 34 H 0.31 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.09 1.80 7.84 -2.38 -0.02 1.79 16 36 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -78.85 329.11 3.52 -75.34 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 1.23 Total: 14.98 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 6.39 Total: 9.56 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -4.47 Total: -104.32 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -1.69 Total: -48.75 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal Total: -78.85 3.52 -75.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339289876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.642 kcal (2) G-P(sol) polarization free energy of solvation -78.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds