Wall clock time and date at job start Tue Mar 31 2020 07:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 C 1.50706 * 109.47078 * 240.00412 * 2 1 3 5 5 H 1.07999 * 119.99759 * 239.99713 * 4 2 1 6 6 C 1.37872 * 120.00091 * 59.99653 * 4 2 1 7 7 N 1.31516 * 120.00080 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99811 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47034 * 59.99970 * 8 6 4 10 10 H 1.48499 * 109.46815 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46950 * 299.99953 * 8 6 4 12 12 N 1.46498 * 109.47694 * 120.00032 * 2 1 3 13 13 C 1.46500 * 119.99904 * 59.99846 * 12 2 1 14 14 C 1.34779 * 120.00188 * 240.00632 * 12 2 1 15 15 O 1.21606 * 119.99604 * 2.60862 * 14 12 2 16 16 C 1.47417 * 119.99664 * 182.61608 * 14 12 2 17 17 N 1.36061 * 126.45160 * 355.00344 * 16 14 12 18 18 C 1.29944 * 108.47691 * 180.02562 * 17 16 14 19 19 O 1.34051 * 109.24373 * 0.24705 * 18 17 16 20 20 C 1.34262 * 108.22407 * 359.60076 * 19 18 17 21 21 C 1.50704 * 126.52406 * 180.12646 * 20 19 18 22 22 H 1.09004 * 109.82144 * 196.01242 * 21 20 19 23 23 C 1.54381 * 109.82715 * 75.12316 * 21 20 19 24 24 C 1.55449 * 102.18346 * 219.17933 * 23 21 20 25 25 C 1.54947 * 100.98798 * 34.04462 * 24 23 21 26 26 O 1.43236 * 109.82642 * 316.89664 * 21 20 19 27 27 H 1.08998 * 109.46778 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46980 * 299.99421 * 1 2 3 29 29 H 1.09000 * 109.47254 * 59.99952 * 1 2 3 30 30 H 0.97001 * 119.99666 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47115 * 263.88662 * 13 12 2 32 32 H 1.09005 * 109.47096 * 23.88229 * 13 12 2 33 33 H 1.09001 * 109.47352 * 143.88878 * 13 12 2 34 34 H 1.07994 * 125.37637 * 179.97438 * 18 17 16 35 35 H 1.08994 * 110.85092 * 337.31885 * 23 21 20 36 36 H 1.09002 * 110.84391 * 100.94294 * 23 21 20 37 37 H 1.08993 * 111.06476 * 276.12659 * 24 23 21 38 38 H 1.09011 * 111.18244 * 152.00777 * 24 23 21 39 39 H 1.09006 * 110.30908 * 204.69024 * 25 24 23 40 40 H 1.08999 * 110.31096 * 82.51968 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.8259 -2.5201 -4.0078 10 1 1.8269 -0.4197 -5.2204 11 1 3.8063 -1.1208 -4.0082 12 7 2.0185 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4280 14 6 2.7933 -0.0355 2.0833 15 8 3.0478 1.1417 1.9155 16 6 3.3323 -0.7463 3.2570 17 7 3.0567 -2.0274 3.6231 18 6 3.7175 -2.2966 4.7092 19 8 4.4232 -1.2174 5.0758 20 6 4.1987 -0.2441 4.1787 21 6 4.7886 1.1425 4.1931 22 1 4.2236 1.7916 3.5241 23 6 6.2654 1.0879 3.7463 24 6 6.9345 2.1185 4.6985 25 6 6.0937 1.9213 5.9850 26 8 4.7564 1.6704 5.5242 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.7089 1.1614 -3.4844 31 1 0.8000 -2.1451 2.0896 32 1 1.4237 -2.5690 0.4773 33 1 2.5068 -2.6089 1.8894 34 1 3.6975 -3.2392 5.2358 35 1 6.6805 0.0919 3.8997 36 1 6.3674 1.3960 2.7057 37 1 6.8309 3.1327 4.3132 38 1 7.9821 1.8719 4.8723 39 1 6.1201 2.8234 6.5963 40 1 6.4647 1.0678 6.5524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339289878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:42 Heat of formation + Delta-G solvation = -43.261241 kcal Electronic energy + Delta-G solvation = -24395.475831 eV Core-core repulsion = 20791.873438 eV Total energy + Delta-G solvation = -3603.602393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.33198 -39.44637 -38.86379 -35.37724 -34.72409 -32.68950 -32.40015 -31.53835 -29.48767 -28.06088 -25.97716 -25.20137 -24.05145 -23.34226 -21.97093 -21.52968 -20.53610 -18.99846 -17.18374 -16.87314 -16.66688 -16.50049 -16.16358 -15.85633 -15.37787 -14.95909 -14.30779 -14.23359 -13.83853 -13.75076 -13.21814 -12.91316 -12.48635 -12.31722 -12.03424 -11.93917 -11.59736 -11.54665 -11.43307 -11.20859 -11.09945 -11.02869 -10.81943 -10.65564 -10.26827 -10.18291 -10.13595 -9.83302 -9.21676 -9.10970 -8.80991 -8.41074 -7.53479 -6.05436 -4.13328 1.23452 2.28621 2.63550 3.29675 3.34331 3.36276 3.64516 3.80701 3.94181 4.19038 4.32541 4.41962 4.46277 4.69455 4.95813 5.06362 5.13543 5.25557 5.27533 5.48248 5.52848 5.55741 5.68950 5.75417 5.81761 6.03274 6.12690 6.29295 6.37421 6.72960 6.78325 6.83027 6.92156 7.09955 7.42284 7.52547 7.63813 7.73670 8.03635 8.20827 8.53287 8.81206 9.00870 9.52642 10.99893 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020308 B = 0.004364 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.410026 B = 6414.468486 C = 6944.698728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.568 5.568 13 C 0.081 3.919 14 C 0.582 3.418 15 O -0.551 6.551 16 C -0.044 4.044 17 N -0.454 5.454 18 C 0.161 3.839 19 O -0.195 6.195 20 C 0.015 3.985 21 C 0.156 3.844 22 H 0.149 0.851 23 C -0.146 4.146 24 C -0.154 4.154 25 C 0.047 3.953 26 O -0.369 6.369 27 H 0.030 0.970 28 H 0.011 0.989 29 H 0.094 0.906 30 H 0.264 0.736 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.251 0.749 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.549 -3.248 15.801 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.083 0.917 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.296 5.296 13 C -0.063 4.063 14 C 0.368 3.632 15 O -0.431 6.431 16 C -0.164 4.164 17 N -0.184 5.184 18 C -0.067 4.067 19 O -0.081 6.081 20 C -0.041 4.041 21 C 0.098 3.902 22 H 0.166 0.834 23 C -0.184 4.184 24 C -0.192 4.192 25 C -0.030 4.030 26 O -0.288 6.288 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.267 0.733 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.978 -2.909 15.343 18.014 hybrid contribution 0.776 -0.602 -0.506 1.105 sum 9.754 -3.511 14.838 18.100 Atomic orbital electron populations 1.22076 0.97942 0.99560 1.00830 1.19039 0.91128 0.94514 0.79637 0.91750 1.21276 1.31924 1.13046 0.90180 0.92229 1.24880 0.94936 0.94982 0.98897 1.69876 1.36271 1.22556 1.23857 0.86540 0.79188 0.79619 0.81942 1.20204 1.21160 1.20282 1.48109 1.46770 1.12389 1.22360 1.21961 1.00826 0.82293 1.01219 1.16798 0.79769 0.85713 0.80958 1.90677 1.61700 1.15080 1.75676 1.21934 1.02046 0.91645 1.00794 1.71074 1.22234 1.13510 1.11550 1.28173 0.92019 0.92295 0.94175 1.84340 1.56811 1.20819 1.46115 1.24102 0.99313 0.91544 0.89181 1.21844 0.97165 0.85272 0.85881 0.83382 1.23215 0.92748 1.00505 1.01932 1.23323 1.00266 1.00425 0.95140 1.23457 0.82217 1.00957 0.96346 1.88536 1.27008 1.83508 1.29706 0.95054 0.96950 0.88737 0.92623 0.94144 0.90897 0.89687 0.73303 0.90400 0.88399 0.89679 0.89570 0.89282 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.97 37.16 0.33 -3.28 16 2 C 0.26 6.75 2.63 -69.08 -0.18 6.57 16 3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -14.43 7.95 -34.44 -0.27 -14.71 16 5 H 0.06 1.62 7.44 -52.49 -0.39 1.23 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.57 -13.13 2.75 -176.53 -0.49 -13.62 16 13 C 0.08 1.58 8.52 59.85 0.51 2.09 16 14 C 0.58 13.07 7.67 -12.52 -0.10 12.98 16 15 O -0.55 -13.43 13.89 5.27 0.07 -13.36 16 16 C -0.04 -0.81 6.67 -83.02 -0.55 -1.37 16 17 N -0.45 -7.25 7.85 -11.48 -0.09 -7.34 16 18 C 0.16 1.91 13.19 51.96 0.69 2.60 16 19 O -0.19 -2.70 10.73 6.42 0.07 -2.63 16 20 C 0.02 0.25 6.19 -35.08 -0.22 0.03 16 21 C 0.16 2.36 3.80 -27.16 -0.10 2.26 16 22 H 0.15 2.59 5.79 -51.93 -0.30 2.29 16 23 C -0.15 -1.74 6.55 -24.71 -0.16 -1.90 16 24 C -0.15 -1.39 7.16 -24.40 -0.17 -1.57 16 25 C 0.05 0.47 7.78 38.19 0.30 0.77 16 26 O -0.37 -5.34 11.00 -35.31 -0.39 -5.73 16 27 H 0.03 0.72 7.67 -51.93 -0.40 0.33 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.47 7.12 -51.93 -0.37 1.10 16 33 H 0.09 1.55 5.33 -51.93 -0.28 1.28 16 34 H 0.25 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.08 0.88 7.84 -51.93 -0.41 0.47 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 328.32 15.07 4.95 4.95 Total: -1.00 -32.56 328.32 -5.63 -38.19 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.33 Total: 1.81 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.03 Total: 6.17 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.05 Total: -45.52 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.25 Total: -21.72 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.56 -5.63 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339289878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.069 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds