Wall clock time and date at job start Tue Mar 31 2020 07:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 C 1.50706 * 109.47078 * 240.00412 * 2 1 3 5 5 H 1.07999 * 119.99759 * 239.99713 * 4 2 1 6 6 C 1.37872 * 120.00091 * 59.99653 * 4 2 1 7 7 N 1.31516 * 120.00080 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99811 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47034 * 59.99970 * 8 6 4 10 10 H 1.48499 * 109.46815 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46950 * 299.99953 * 8 6 4 12 12 N 1.46498 * 109.47694 * 120.00032 * 2 1 3 13 13 C 1.46500 * 119.99904 * 59.99846 * 12 2 1 14 14 C 1.34779 * 120.00188 * 240.00632 * 12 2 1 15 15 O 1.21606 * 119.99604 * 2.60862 * 14 12 2 16 16 C 1.47417 * 119.99664 * 182.61608 * 14 12 2 17 17 N 1.36061 * 126.45160 * 355.00344 * 16 14 12 18 18 C 1.29944 * 108.47691 * 180.02562 * 17 16 14 19 19 O 1.34051 * 109.24373 * 0.24705 * 18 17 16 20 20 C 1.34262 * 108.22407 * 359.60076 * 19 18 17 21 21 C 1.50704 * 126.52406 * 180.12646 * 20 19 18 22 22 H 1.09004 * 109.82144 * 196.01242 * 21 20 19 23 23 C 1.54381 * 109.82715 * 75.12316 * 21 20 19 24 24 C 1.55449 * 102.18346 * 219.17933 * 23 21 20 25 25 C 1.54947 * 100.98798 * 34.04462 * 24 23 21 26 26 O 1.43236 * 109.82642 * 316.89664 * 21 20 19 27 27 H 1.08998 * 109.46778 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46980 * 299.99421 * 1 2 3 29 29 H 1.09000 * 109.47254 * 59.99952 * 1 2 3 30 30 H 0.97001 * 119.99666 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47115 * 263.88662 * 13 12 2 32 32 H 1.09005 * 109.47096 * 23.88229 * 13 12 2 33 33 H 1.09001 * 109.47352 * 143.88878 * 13 12 2 34 34 H 1.07994 * 125.37637 * 179.97438 * 18 17 16 35 35 H 1.08994 * 110.85092 * 337.31885 * 23 21 20 36 36 H 1.09002 * 110.84391 * 100.94294 * 23 21 20 37 37 H 1.08993 * 111.06476 * 276.12659 * 24 23 21 38 38 H 1.09011 * 111.18244 * 152.00777 * 24 23 21 39 39 H 1.09006 * 110.30908 * 204.69024 * 25 24 23 40 40 H 1.08999 * 110.31096 * 82.51968 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.8259 -2.5201 -4.0078 10 1 1.8269 -0.4197 -5.2204 11 1 3.8063 -1.1208 -4.0082 12 7 2.0185 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4280 14 6 2.7933 -0.0355 2.0833 15 8 3.0478 1.1417 1.9155 16 6 3.3323 -0.7463 3.2570 17 7 3.0567 -2.0274 3.6231 18 6 3.7175 -2.2966 4.7092 19 8 4.4232 -1.2174 5.0758 20 6 4.1987 -0.2441 4.1787 21 6 4.7886 1.1425 4.1931 22 1 4.2236 1.7916 3.5241 23 6 6.2654 1.0879 3.7463 24 6 6.9345 2.1185 4.6985 25 6 6.0937 1.9213 5.9850 26 8 4.7564 1.6704 5.5242 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.7089 1.1614 -3.4844 31 1 0.8000 -2.1451 2.0896 32 1 1.4237 -2.5690 0.4773 33 1 2.5068 -2.6089 1.8894 34 1 3.6975 -3.2392 5.2358 35 1 6.6805 0.0919 3.8997 36 1 6.3674 1.3960 2.7057 37 1 6.8309 3.1327 4.3132 38 1 7.9821 1.8719 4.8723 39 1 6.1201 2.8234 6.5963 40 1 6.4647 1.0678 6.5524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339289878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:42 Heat of formation + Delta-G solvation = -66.732525 kcal Electronic energy + Delta-G solvation = -24396.493622 eV Core-core repulsion = 20791.873438 eV Total energy + Delta-G solvation = -3604.620184 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.50495 -40.66201 -40.38105 -37.25460 -36.00650 -34.65787 -33.40519 -32.59400 -31.42282 -29.19338 -27.62336 -27.32602 -25.50430 -24.38276 -23.06385 -22.72871 -21.94911 -20.58552 -18.68508 -18.34655 -17.90824 -17.85005 -17.55727 -17.30463 -16.77443 -16.31257 -16.04910 -15.83707 -15.05325 -14.78903 -14.59664 -14.36553 -14.15448 -13.95125 -13.57850 -13.37117 -12.99032 -12.88123 -12.78381 -12.75189 -12.69998 -12.39120 -12.26808 -12.21242 -12.13179 -11.94852 -11.52718 -11.20391 -10.92224 -10.83671 -10.52423 -10.07111 -9.35537 -8.15464 -6.32351 -0.03527 1.10325 1.42068 1.44326 1.50068 1.52517 2.18073 2.26511 2.45335 2.74674 3.10621 3.12454 3.33498 3.42644 3.75265 3.83584 4.05414 4.16200 4.29875 4.36713 4.56080 4.61857 4.73189 4.73729 4.77120 4.80330 4.86664 4.87478 4.95815 4.97262 5.03021 5.16057 5.36370 5.43810 5.56973 5.64379 5.82086 5.97690 6.12759 6.42448 6.71217 6.73707 7.18023 7.40250 8.89226 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020308 B = 0.004364 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.410026 B = 6414.468486 C = 6944.698728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.261 3.739 3 H 0.017 0.983 4 C -0.541 4.541 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.276 1.276 12 N -0.580 5.580 13 C 0.088 3.912 14 C 0.573 3.427 15 O -0.585 6.585 16 C -0.075 4.075 17 N -0.484 5.484 18 C 0.198 3.802 19 O -0.188 6.188 20 C 0.024 3.976 21 C 0.152 3.848 22 H 0.114 0.886 23 C -0.144 4.144 24 C -0.143 4.143 25 C 0.038 3.962 26 O -0.391 6.391 27 H 0.043 0.957 28 H 0.017 0.983 29 H 0.073 0.927 30 H 0.266 0.734 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.313 0.687 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.185 -5.449 17.393 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.160 3.840 3 H 0.035 0.965 4 C -0.579 4.579 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.201 1.201 12 N -0.308 5.308 13 C -0.054 4.054 14 C 0.361 3.639 15 O -0.468 6.468 16 C -0.194 4.194 17 N -0.213 5.213 18 C -0.029 4.029 19 O -0.075 6.075 20 C -0.033 4.033 21 C 0.093 3.907 22 H 0.131 0.869 23 C -0.182 4.182 24 C -0.180 4.180 25 C -0.037 4.037 26 O -0.310 6.310 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.327 0.673 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.605 -5.131 16.948 20.641 hybrid contribution 0.293 0.086 -0.848 0.901 sum 10.898 -5.044 16.101 20.086 Atomic orbital electron populations 1.21875 0.97063 1.00025 1.00004 1.18679 0.91755 0.92465 0.81132 0.96521 1.21477 1.32289 1.13177 0.91000 0.92329 1.25727 0.94935 0.95610 1.01916 1.70012 1.37026 1.23730 1.24638 0.85473 0.78450 0.78909 0.77970 1.18861 1.20612 1.20138 1.48101 1.47318 1.13639 1.21728 1.22041 1.01991 0.80352 1.01057 1.17335 0.79142 0.85611 0.81846 1.90650 1.62644 1.16708 1.76784 1.21350 1.04160 0.93299 1.00573 1.70927 1.24266 1.12304 1.13822 1.29517 0.88366 0.92792 0.92252 1.84388 1.56993 1.20841 1.45246 1.24152 0.98210 0.92263 0.88704 1.21649 0.98587 0.84348 0.86068 0.86889 1.23208 0.90930 1.02031 1.02012 1.23335 1.01491 0.99605 0.93579 1.23771 0.80441 1.02545 0.96960 1.88506 1.29911 1.83488 1.29095 0.93751 0.96419 0.90811 0.92468 0.93010 0.91728 0.87967 0.67265 0.89448 0.89471 0.89540 0.86530 0.87315 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 8.97 71.98 0.65 -6.08 16 2 C 0.26 14.37 2.63 44.25 0.12 14.48 16 3 H 0.02 1.07 6.90 -2.39 -0.02 1.06 16 4 C -0.54 -30.47 7.95 25.60 0.20 -30.26 16 5 H 0.06 3.23 7.44 -2.91 -0.02 3.21 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.92 -53.35 11.32 21.45 0.24 -53.11 16 8 Si 0.97 43.57 29.54 68.60 2.03 45.59 16 9 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 N -0.58 -27.71 2.75 -830.67 -2.29 -30.00 16 13 C 0.09 3.44 8.52 127.77 1.09 4.53 16 14 C 0.57 26.91 7.67 86.66 0.66 27.58 16 15 O -0.59 -30.67 13.89 -4.05 -0.06 -30.72 16 16 C -0.08 -2.81 6.67 40.41 0.27 -2.54 16 17 N -0.48 -14.53 7.85 -305.15 -2.40 -16.93 16 18 C 0.20 3.94 13.19 130.52 1.72 5.66 16 19 O -0.19 -4.68 10.73 0.40 0.00 -4.67 16 20 C 0.02 0.79 6.19 25.19 0.16 0.94 16 21 C 0.15 4.68 3.80 30.32 0.12 4.79 16 22 H 0.11 4.29 5.79 -2.39 -0.01 4.27 16 23 C -0.14 -3.34 6.55 31.91 0.21 -3.14 16 24 C -0.14 -2.30 7.16 32.10 0.23 -2.07 16 25 C 0.04 0.69 7.78 72.65 0.57 1.25 16 26 O -0.39 -11.12 11.00 -148.91 -1.64 -12.76 16 27 H 0.04 2.10 7.67 -2.39 -0.02 2.08 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 4.09 6.07 -2.39 -0.01 4.08 16 30 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 2.59 7.12 -2.38 -0.02 2.58 16 33 H 0.10 3.64 5.33 -2.39 -0.01 3.63 16 34 H 0.31 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.09 1.83 7.84 -2.39 -0.02 1.81 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.12 1.19 8.14 -2.38 -0.02 1.18 16 39 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -74.98 328.32 3.39 -71.59 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 1.06 Total: 14.40 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 6.43 Total: 16.59 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -4.44 Total: -100.03 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -1.69 Total: -48.15 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -74.98 3.39 -71.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339289878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.857 kcal (2) G-P(sol) polarization free energy of solvation -74.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds