Wall clock time and date at job start Tue Mar 31 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35508 * 116.99814 * 2 1 4 4 C 1.39665 * 120.48891 * 179.97438 * 3 2 1 5 5 C 1.39178 * 118.19691 * 180.02562 * 4 3 2 6 6 C 1.48365 * 120.51772 * 179.97438 * 5 4 3 7 7 O 1.21391 * 120.00262 * 0.02562 * 6 5 4 8 8 O 1.34642 * 119.99724 * 180.02562 * 6 5 4 9 9 C 1.45199 * 116.99981 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47285 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47127 * 299.99735 * 10 9 8 12 12 C 1.52994 * 109.46952 * 60.00082 * 10 9 8 13 13 C 1.53002 * 109.47225 * 179.97438 * 10 9 8 14 14 C 1.50700 * 109.47311 * 179.97438 * 13 10 9 15 15 H 1.08000 * 119.99595 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00261 * 180.02562 * 14 13 10 17 17 N 1.31518 * 119.99964 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00010 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47175 * 60.00062 * 18 16 14 20 20 H 1.48500 * 109.46888 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47002 * 299.99890 * 18 16 14 22 22 N 1.33309 * 118.96084 * 359.97438 * 5 4 3 23 23 C 1.31520 * 120.88200 * 359.97438 * 22 5 4 24 24 N 1.31895 * 121.99551 * 0.02562 * 23 22 5 25 25 H 1.08999 * 109.47202 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47618 * 300.00618 * 1 2 3 27 27 H 1.09004 * 109.46726 * 60.00605 * 1 2 3 28 28 H 1.07993 * 120.90001 * 359.74394 * 4 3 2 29 29 H 1.09001 * 109.46885 * 299.99530 * 9 8 6 30 30 H 1.09005 * 109.47486 * 59.99409 * 9 8 6 31 31 H 1.09007 * 109.46995 * 60.00504 * 11 10 9 32 32 H 1.09005 * 109.46981 * 179.97438 * 11 10 9 33 33 H 1.08997 * 109.47568 * 299.99966 * 11 10 9 34 34 H 1.09001 * 109.47479 * 59.99945 * 12 10 9 35 35 H 1.09005 * 109.47241 * 179.97438 * 12 10 9 36 36 H 1.09007 * 109.47399 * 299.99636 * 12 10 9 37 37 H 1.08993 * 109.47438 * 300.00386 * 13 10 9 38 38 H 1.09002 * 109.46648 * 60.00008 * 13 10 9 39 39 H 0.96993 * 120.00190 * 179.97438 * 17 16 14 40 40 H 1.08004 * 118.99921 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4382 1.2924 0.0005 5 6 4.0199 2.5568 0.0011 6 6 5.4959 2.7071 0.0022 7 8 6.2063 1.7227 0.0022 8 8 6.0476 3.9353 0.0032 9 6 7.4978 4.0066 0.0038 10 6 7.9364 5.4724 0.0043 11 6 7.3921 6.1680 -1.2450 12 6 7.3912 6.1674 1.2534 13 6 9.4646 5.5475 0.0054 14 6 9.8966 6.9912 0.0053 15 1 9.1553 7.7766 0.0049 16 6 11.2382 7.3094 0.0057 17 7 12.1408 6.3529 0.0058 18 14 11.7736 9.0990 0.0063 19 1 11.2445 9.7736 1.2188 20 1 13.2568 9.1719 0.0073 21 1 11.2452 9.7742 -1.2062 22 7 3.2301 3.6307 0.0005 23 6 1.9208 3.5058 -0.0010 24 7 1.3314 2.3259 -0.0016 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 4.0482 0.4013 0.0051 29 1 7.8856 3.5107 0.8936 30 1 7.8863 3.5117 -0.8864 31 1 6.3034 6.1146 -1.2454 32 1 7.7043 7.2124 -1.2444 33 1 7.7806 5.6729 -2.1350 34 1 7.7790 5.6718 2.1435 35 1 7.7041 7.2116 1.2541 36 1 6.3025 6.1139 1.2531 37 1 9.8521 5.0520 0.8956 38 1 9.8533 5.0522 -0.8843 39 1 13.0846 6.5767 0.0057 40 1 1.3099 4.3964 -0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343531521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:06 Heat of formation + Delta-G solvation = -81.944049 kcal Electronic energy + Delta-G solvation = -23044.352961 eV Core-core repulsion = 19439.073156 eV Total energy + Delta-G solvation = -3605.279805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.74293 -40.21058 -38.87406 -37.27831 -35.47849 -33.80550 -32.31598 -32.27072 -28.29734 -27.42524 -26.67050 -26.36615 -25.21513 -24.68253 -22.99471 -21.49461 -19.17154 -18.76706 -18.19506 -16.81471 -16.78360 -16.35618 -16.22748 -16.11895 -15.84933 -15.33949 -14.61678 -14.61124 -14.52142 -13.67334 -13.57785 -13.08617 -12.55081 -12.43653 -12.37093 -12.11896 -12.03519 -11.26539 -11.25901 -10.98522 -10.92694 -10.82114 -10.80986 -10.56711 -10.34857 -10.33440 -10.21237 -9.90000 -9.72869 -9.62915 -9.20506 -8.94588 -8.35272 -5.99731 -4.00730 0.02404 0.59422 2.11909 2.30519 2.72078 3.34077 3.38812 3.40858 3.41936 3.56139 3.68457 4.36252 4.46128 4.49775 4.75159 4.81407 4.88476 5.11683 5.13902 5.35790 5.45238 5.49560 5.61661 5.81498 6.01059 6.20175 6.25601 6.39998 6.50036 6.58112 6.58915 6.75087 6.76187 7.14198 7.15180 7.15821 7.48553 7.61398 7.73379 7.75707 7.98814 8.40697 9.03306 9.62202 11.11902 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.044772 B = 0.002710 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.246638 B =10330.519050 C =10754.105071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.297 6.297 3 C 0.364 3.636 4 C -0.182 4.182 5 C 0.181 3.819 6 C 0.516 3.484 7 O -0.490 6.490 8 O -0.319 6.319 9 C 0.075 3.925 10 C -0.057 4.057 11 C -0.127 4.127 12 C -0.127 4.127 13 C 0.035 3.965 14 C -0.509 4.509 15 H 0.061 0.939 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.277 1.277 22 N -0.490 5.490 23 C 0.335 3.665 24 N -0.562 5.562 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.169 0.831 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.351 -10.054 -0.009 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.200 6.200 3 C 0.176 3.824 4 C -0.205 4.205 5 C 0.038 3.962 6 C 0.357 3.643 7 O -0.377 6.377 8 O -0.233 6.233 9 C 0.002 3.998 10 C -0.057 4.057 11 C -0.184 4.184 12 C -0.184 4.184 13 C -0.002 4.002 14 C -0.547 4.547 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 N -0.211 5.211 23 C 0.047 3.953 24 N -0.293 5.293 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.186 0.814 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -23.298 -9.876 -0.009 25.305 hybrid contribution 0.752 0.166 0.001 0.770 sum -22.546 -9.710 -0.008 24.548 Atomic orbital electron populations 1.23032 0.76068 1.03743 1.03015 1.86266 1.23801 1.23399 1.86539 1.19942 0.88995 0.85305 0.88205 1.21887 0.93044 1.00203 1.05409 1.20378 0.92445 0.88745 0.94678 1.20479 0.86944 0.82865 0.74000 1.90869 1.62057 1.39899 1.44871 1.86660 1.26707 1.28342 1.81546 1.23708 0.73253 1.00574 1.02246 1.20814 0.99460 0.89124 0.96300 1.21725 0.98703 1.01644 0.96340 1.21727 0.98698 1.01652 0.96342 1.19133 0.85821 0.97780 0.97484 1.21111 0.91454 0.91831 1.50333 0.92087 1.25015 0.96905 0.97110 0.95512 1.69954 1.00912 1.31827 1.50848 0.86669 0.77371 0.85428 0.78600 1.20266 1.21424 1.20261 1.68550 1.06215 1.32477 1.13833 1.24860 0.87975 0.93829 0.88657 1.68076 1.42066 0.99387 1.19765 0.87910 0.91708 0.91698 0.81372 0.91200 0.91203 0.93887 0.91546 0.93825 0.93832 0.91544 0.93884 0.96310 0.96313 0.92971 0.77318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.41 101.05 1.05 1.25 16 2 O -0.30 -2.67 10.49 -18.22 -0.19 -2.86 16 3 C 0.36 3.76 7.54 -16.68 -0.13 3.63 16 4 C -0.18 -2.05 9.68 -38.70 -0.37 -2.43 16 5 C 0.18 2.39 6.79 -82.71 -0.56 1.83 16 6 C 0.52 8.15 7.97 34.90 0.28 8.42 16 7 O -0.49 -8.47 16.21 -19.18 -0.31 -8.78 16 8 O -0.32 -5.44 8.73 -40.34 -0.35 -5.79 16 9 C 0.07 1.38 4.33 37.16 0.16 1.54 16 10 C -0.06 -1.15 0.61 -154.51 -0.09 -1.24 16 11 C -0.13 -2.43 8.08 37.15 0.30 -2.13 16 12 C -0.13 -2.43 8.08 37.15 0.30 -2.13 16 13 C 0.03 0.87 4.04 -27.88 -0.11 0.75 16 14 C -0.51 -13.68 7.65 -34.44 -0.26 -13.95 16 15 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 18 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 N -0.49 -6.13 10.25 -11.21 -0.11 -6.24 16 23 C 0.33 3.17 12.27 -92.30 -1.13 2.04 16 24 N -0.56 -5.48 9.36 -14.64 -0.14 -5.62 16 25 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 27 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 28 H 0.17 1.74 7.73 -52.49 -0.41 1.34 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.04 0.75 7.68 -51.93 -0.40 0.35 16 32 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 36 H 0.04 0.75 7.68 -51.93 -0.40 0.35 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.21 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -31.34 343.67 -6.43 -37.77 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.55 Total: -3.29 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.67 Total: -0.95 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.48 Total: -37.61 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.85 Total: -17.42 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.34 -6.43 -37.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343531521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.175 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds