Wall clock time and date at job start Tue Mar 31 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35508 * 116.99814 * 2 1 4 4 C 1.39665 * 120.48891 * 179.97438 * 3 2 1 5 5 C 1.39178 * 118.19691 * 180.02562 * 4 3 2 6 6 C 1.48365 * 120.51772 * 179.97438 * 5 4 3 7 7 O 1.21391 * 120.00262 * 0.02562 * 6 5 4 8 8 O 1.34642 * 119.99724 * 180.02562 * 6 5 4 9 9 C 1.45199 * 116.99981 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47285 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47127 * 299.99735 * 10 9 8 12 12 C 1.52994 * 109.46952 * 60.00082 * 10 9 8 13 13 C 1.53002 * 109.47225 * 179.97438 * 10 9 8 14 14 C 1.50700 * 109.47311 * 179.97438 * 13 10 9 15 15 H 1.08000 * 119.99595 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00261 * 180.02562 * 14 13 10 17 17 N 1.31518 * 119.99964 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00010 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47175 * 60.00062 * 18 16 14 20 20 H 1.48500 * 109.46888 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47002 * 299.99890 * 18 16 14 22 22 N 1.33309 * 118.96084 * 359.97438 * 5 4 3 23 23 C 1.31520 * 120.88200 * 359.97438 * 22 5 4 24 24 N 1.31895 * 121.99551 * 0.02562 * 23 22 5 25 25 H 1.08999 * 109.47202 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47618 * 300.00618 * 1 2 3 27 27 H 1.09004 * 109.46726 * 60.00605 * 1 2 3 28 28 H 1.07993 * 120.90001 * 359.74394 * 4 3 2 29 29 H 1.09001 * 109.46885 * 299.99530 * 9 8 6 30 30 H 1.09005 * 109.47486 * 59.99409 * 9 8 6 31 31 H 1.09007 * 109.46995 * 60.00504 * 11 10 9 32 32 H 1.09005 * 109.46981 * 179.97438 * 11 10 9 33 33 H 1.08997 * 109.47568 * 299.99966 * 11 10 9 34 34 H 1.09001 * 109.47479 * 59.99945 * 12 10 9 35 35 H 1.09005 * 109.47241 * 179.97438 * 12 10 9 36 36 H 1.09007 * 109.47399 * 299.99636 * 12 10 9 37 37 H 1.08993 * 109.47438 * 300.00386 * 13 10 9 38 38 H 1.09002 * 109.46648 * 60.00008 * 13 10 9 39 39 H 0.96993 * 120.00190 * 179.97438 * 17 16 14 40 40 H 1.08004 * 118.99921 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4382 1.2924 0.0005 5 6 4.0199 2.5568 0.0011 6 6 5.4959 2.7071 0.0022 7 8 6.2063 1.7227 0.0022 8 8 6.0476 3.9353 0.0032 9 6 7.4978 4.0066 0.0038 10 6 7.9364 5.4724 0.0043 11 6 7.3921 6.1680 -1.2450 12 6 7.3912 6.1674 1.2534 13 6 9.4646 5.5475 0.0054 14 6 9.8966 6.9912 0.0053 15 1 9.1553 7.7766 0.0049 16 6 11.2382 7.3094 0.0057 17 7 12.1408 6.3529 0.0058 18 14 11.7736 9.0990 0.0063 19 1 11.2445 9.7736 1.2188 20 1 13.2568 9.1719 0.0073 21 1 11.2452 9.7742 -1.2062 22 7 3.2301 3.6307 0.0005 23 6 1.9208 3.5058 -0.0010 24 7 1.3314 2.3259 -0.0016 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 4.0482 0.4013 0.0051 29 1 7.8856 3.5107 0.8936 30 1 7.8863 3.5117 -0.8864 31 1 6.3034 6.1146 -1.2454 32 1 7.7043 7.2124 -1.2444 33 1 7.7806 5.6729 -2.1350 34 1 7.7790 5.6718 2.1435 35 1 7.7041 7.2116 1.2541 36 1 6.3025 6.1139 1.2531 37 1 9.8521 5.0520 0.8956 38 1 9.8533 5.0522 -0.8843 39 1 13.0846 6.5767 0.0057 40 1 1.3099 4.3964 -0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343531521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:06 Heat of formation + Delta-G solvation = -101.174112 kcal Electronic energy + Delta-G solvation = -23045.186839 eV Core-core repulsion = 19439.073156 eV Total energy + Delta-G solvation = -3606.113683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.60801 -41.44218 -39.62475 -38.79045 -37.01505 -34.68994 -34.35450 -33.08949 -29.45371 -28.83675 -28.07846 -27.94010 -26.36436 -25.47385 -24.84110 -22.63230 -20.24740 -19.84310 -19.55156 -18.36822 -17.90847 -17.76465 -17.30631 -17.24886 -16.69950 -16.49434 -16.08238 -15.58881 -15.42208 -15.07175 -15.04152 -14.72884 -14.03993 -14.03815 -13.81103 -12.99692 -12.96793 -12.75995 -12.74419 -12.64252 -12.33918 -12.29044 -12.12406 -12.05563 -11.96091 -11.88747 -11.64855 -11.37152 -11.07269 -10.90627 -10.72643 -10.49941 -10.40781 -8.13855 -6.21255 -0.92393 -0.19797 1.10250 1.16915 1.44281 1.46341 1.53596 1.84389 2.45223 2.55853 2.73030 2.87840 3.20675 3.43391 3.62513 3.88535 3.90498 3.93402 4.22840 4.36110 4.40150 4.41048 4.48604 4.59933 4.71403 4.74908 4.93089 5.04445 5.06572 5.16109 5.21669 5.44190 5.47392 5.47704 5.51492 5.55881 5.75933 5.88172 5.89041 6.28546 6.39522 6.77935 6.92001 7.46023 8.98484 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.044772 B = 0.002710 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.246638 B =10330.519050 C =10754.105071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.304 6.304 3 C 0.368 3.632 4 C -0.181 4.181 5 C 0.167 3.833 6 C 0.517 3.483 7 O -0.511 6.511 8 O -0.319 6.319 9 C 0.084 3.916 10 C -0.053 4.053 11 C -0.120 4.120 12 C -0.120 4.120 13 C 0.040 3.960 14 C -0.515 4.515 15 H 0.071 0.929 16 C -0.003 4.003 17 N -0.937 5.937 18 Si 0.959 3.041 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.267 1.267 22 N -0.513 5.513 23 C 0.341 3.659 24 N -0.556 5.556 25 H 0.129 0.871 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.172 0.828 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.064 0.936 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.260 0.740 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.056 -9.333 -0.010 27.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.207 6.207 3 C 0.178 3.822 4 C -0.205 4.205 5 C 0.025 3.975 6 C 0.360 3.640 7 O -0.399 6.399 8 O -0.233 6.233 9 C 0.010 3.990 10 C -0.053 4.053 11 C -0.177 4.177 12 C -0.177 4.177 13 C 0.003 3.997 14 C -0.553 4.553 15 H 0.089 0.911 16 C -0.200 4.200 17 N -0.578 5.578 18 Si 0.785 3.215 19 H -0.192 1.192 20 H -0.215 1.215 21 H -0.192 1.192 22 N -0.234 5.234 23 C 0.054 3.946 24 N -0.287 5.287 25 H 0.147 0.853 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.189 0.811 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.011 0.989 38 H 0.010 0.990 39 H 0.069 0.931 40 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -26.042 -9.159 -0.010 27.606 hybrid contribution 1.445 -0.171 0.001 1.455 sum -24.597 -9.330 -0.008 26.307 Atomic orbital electron populations 1.23335 0.74110 1.05683 1.03316 1.86273 1.25702 1.22678 1.86007 1.20006 0.88735 0.85999 0.87469 1.21900 0.93802 0.99605 1.05231 1.20033 0.90880 0.89859 0.96743 1.20939 0.88150 0.81970 0.72971 1.90853 1.62936 1.40253 1.45858 1.86630 1.25365 1.29391 1.81961 1.23360 0.74541 0.99156 1.01916 1.20620 0.96276 0.90744 0.97678 1.21644 0.99933 1.00638 0.95451 1.21646 0.99929 1.00645 0.95453 1.18987 0.89273 0.96534 0.94892 1.21499 0.91768 0.92884 1.49110 0.91100 1.25924 0.97197 1.01556 0.95362 1.70100 1.01160 1.34145 1.52375 0.85581 0.76711 0.80089 0.79166 1.19204 1.21548 1.19192 1.68519 1.07473 1.32358 1.15002 1.25618 0.87216 0.94898 0.86825 1.68199 1.41715 0.99346 1.19485 0.85281 0.91362 0.91357 0.81052 0.91631 0.91636 0.91726 0.92506 0.94189 0.94196 0.92507 0.91722 0.98944 0.98951 0.93080 0.73574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.41 113.37 1.18 1.43 16 2 O -0.30 -4.84 10.49 -88.10 -0.92 -5.76 16 3 C 0.37 6.91 7.54 84.92 0.64 7.55 16 4 C -0.18 -3.92 9.68 22.84 0.22 -3.70 16 5 C 0.17 4.27 6.79 41.84 0.28 4.55 16 6 C 0.52 16.21 7.97 70.52 0.56 16.77 16 7 O -0.51 -17.83 16.21 20.19 0.33 -17.51 16 8 O -0.32 -10.71 8.73 -55.51 -0.48 -11.20 16 9 C 0.08 3.11 4.33 71.98 0.31 3.42 16 10 C -0.05 -2.15 0.61 -52.18 -0.03 -2.18 16 11 C -0.12 -4.48 8.08 71.98 0.58 -3.90 16 12 C -0.12 -4.49 8.08 71.98 0.58 -3.90 16 13 C 0.04 2.07 4.04 29.85 0.12 2.19 16 14 C -0.51 -27.90 7.65 25.60 0.20 -27.71 16 15 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 16 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 17 N -0.94 -56.69 13.29 21.45 0.28 -56.40 16 18 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 22 N -0.51 -11.86 10.25 -189.39 -1.94 -13.80 16 23 C 0.34 5.54 12.27 180.94 2.22 7.77 16 24 N -0.56 -9.44 9.36 -313.00 -2.93 -12.38 16 25 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 27 H 0.07 0.56 8.12 -2.38 -0.02 0.54 16 28 H 0.17 3.48 7.73 -2.91 -0.02 3.46 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.06 2.14 7.68 -2.38 -0.02 2.12 16 32 H 0.06 2.22 6.62 -2.38 -0.02 2.21 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 2.22 6.62 -2.38 -0.02 2.21 16 36 H 0.06 2.14 7.68 -2.38 -0.02 2.12 16 37 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.25 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -67.69 343.67 4.73 -62.96 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.04 Total: 5.71 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 7.33 Total: 2.56 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -4.59 Total: -82.58 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -1.08 Total: -34.47 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -67.69 4.73 -62.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343531521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.217 kcal (2) G-P(sol) polarization free energy of solvation -67.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds