Wall clock time and date at job start Tue Mar 31 2020 07:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36016 * 116.99567 * 2 1 4 4 C 1.35849 * 120.31321 * 359.97438 * 3 2 1 5 5 N 1.35442 * 120.77390 * 179.97438 * 4 3 2 6 6 H 0.97001 * 119.29560 * 179.97438 * 5 4 3 7 7 C 1.36427 * 121.41212 * 0.02603 * 5 4 3 8 8 C 1.48065 * 119.72036 * 179.97438 * 7 5 4 9 9 O 1.21517 * 120.00552 * 152.22150 * 8 7 5 10 10 N 1.34780 * 120.00175 * 332.21143 * 8 7 5 11 11 C 1.46506 * 119.99550 * 3.86932 * 10 8 7 12 12 C 1.50705 * 109.47107 * 96.55312 * 11 10 8 13 13 H 1.07996 * 119.99717 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99957 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99969 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00216 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47422 * 89.99783 * 16 14 12 18 18 H 1.48497 * 109.47353 * 209.99955 * 16 14 12 19 19 H 1.48511 * 109.46942 * 329.99840 * 16 14 12 20 20 C 1.46497 * 120.00667 * 183.86618 * 10 8 7 21 21 C 1.52999 * 109.47392 * 114.97216 * 20 10 8 22 22 C 1.53000 * 109.47381 * 234.97782 * 20 10 8 23 23 C 1.36179 * 120.56059 * 359.97267 * 7 5 4 24 24 C 1.41576 * 120.31050 * 179.72178 * 3 2 1 25 25 O 1.22262 * 120.65822 * 0.02562 * 24 3 2 26 26 H 1.09001 * 109.46630 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47636 * 299.99810 * 1 2 3 28 28 H 1.08997 * 109.47429 * 60.00348 * 1 2 3 29 29 H 1.08000 * 119.61639 * 359.97438 * 4 3 2 30 30 H 1.09002 * 109.46864 * 216.55229 * 11 10 8 31 31 H 1.09001 * 109.47048 * 336.55160 * 11 10 8 32 32 H 0.97009 * 119.99973 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.46921 * 354.97281 * 20 10 8 34 34 H 1.09003 * 109.47035 * 60.00134 * 21 20 10 35 35 H 1.08994 * 109.46913 * 180.02562 * 21 20 10 36 36 H 1.08997 * 109.47014 * 300.00560 * 21 20 10 37 37 H 1.08999 * 109.47708 * 59.99334 * 22 20 10 38 38 H 1.08993 * 109.47263 * 180.02562 * 22 20 10 39 39 H 1.09003 * 109.46683 * 299.99644 * 22 20 10 40 40 H 1.07994 * 120.40687 * 179.97438 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.3127 2.3553 -0.0005 5 7 1.9178 3.5670 0.0000 6 1 1.3730 4.3696 -0.0008 7 6 3.2771 3.6830 0.0005 8 6 3.8992 5.0266 0.0005 9 8 4.9992 5.1870 0.4913 10 7 3.2455 6.0719 -0.5441 11 6 1.8854 5.8971 -1.0597 12 6 0.8916 6.3268 -0.0114 13 1 1.2386 6.6930 0.9435 14 6 -0.4603 6.2524 -0.2714 15 7 -0.8827 5.8059 -1.4341 16 14 -1.6921 6.7843 1.0282 17 1 -1.9924 8.2292 0.8638 18 1 -2.9428 5.9983 0.8760 19 1 -1.1203 6.5481 2.3783 20 6 3.8949 7.3829 -0.6206 21 6 4.1090 7.7613 -2.0875 22 6 3.0074 8.4317 0.0525 23 6 4.0667 2.5735 0.0011 24 6 3.4598 1.2938 0.0059 25 8 4.1430 0.2799 0.0107 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2343 2.2973 -0.0014 30 1 1.7552 6.5054 -1.9548 31 1 1.7224 4.8480 -1.3065 32 1 -1.8340 5.7532 -1.6169 33 1 4.8580 7.3414 -0.1117 34 1 3.1459 7.8027 -2.5963 35 1 4.5926 8.7364 -2.1442 36 1 4.7413 7.0140 -2.5669 37 1 2.8548 8.1622 1.0975 38 1 3.4903 9.4072 -0.0048 39 1 2.0443 8.4732 -0.4563 40 1 5.1425 2.6682 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348737675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:12 Heat of formation + Delta-G solvation = -54.096428 kcal Electronic energy + Delta-G solvation = -24793.690734 eV Core-core repulsion = 21189.618492 eV Total energy + Delta-G solvation = -3604.072242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.15854 -39.47139 -37.68820 -37.14930 -36.30078 -33.53130 -31.96707 -31.04704 -29.89574 -27.97680 -27.34895 -26.76690 -24.25996 -23.45718 -22.72605 -21.20690 -19.54121 -18.29078 -17.66843 -17.16672 -16.81065 -16.01499 -15.68537 -15.65516 -15.05212 -14.87670 -14.54028 -14.11773 -13.85281 -13.82091 -13.49243 -13.16161 -12.86837 -12.79965 -12.53054 -12.37571 -12.02903 -11.80924 -11.57616 -11.39119 -11.26210 -11.17112 -11.05362 -10.91048 -10.61231 -10.26593 -10.03879 -9.75447 -9.10196 -9.02356 -8.97450 -8.18112 -7.18033 -6.71304 -4.86793 1.20260 1.63588 2.91077 3.01137 3.01823 3.07858 3.21401 3.50941 3.65342 3.90736 4.16422 4.57926 4.73295 4.89273 5.06755 5.29696 5.30490 5.34854 5.48475 5.50993 5.60074 5.63117 5.90496 5.93271 5.98149 6.10439 6.20987 6.24915 6.28670 6.51439 6.56673 6.74231 6.84229 6.98255 7.19043 7.24457 7.38816 7.43813 7.63089 7.82451 8.25687 8.45316 8.50086 8.85556 10.31091 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.007232 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.796667 B = 3870.580178 C = 5690.544765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.293 6.293 3 C -0.056 4.056 4 C 0.044 3.956 5 N -0.544 5.544 6 H 0.453 0.547 7 C 0.140 3.860 8 C 0.553 3.447 9 O -0.537 6.537 10 N -0.581 5.581 11 C 0.198 3.802 12 C -0.567 4.567 13 H 0.076 0.924 14 C 0.071 3.929 15 N -0.872 5.872 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.268 1.268 20 C 0.137 3.863 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.243 4.243 24 C 0.402 3.598 25 O -0.526 6.526 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.165 0.835 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.275 0.725 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.110 1.066 -0.002 1.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.205 6.205 3 C -0.107 4.107 4 C -0.087 4.087 5 N -0.172 5.172 6 H 0.314 0.686 7 C 0.025 3.975 8 C 0.339 3.661 9 O -0.415 6.415 10 N -0.312 5.312 11 C 0.078 3.922 12 C -0.605 4.605 13 H 0.094 0.906 14 C -0.137 4.137 15 N -0.507 5.507 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.192 1.192 20 C 0.034 3.966 21 C -0.218 4.218 22 C -0.212 4.212 23 C -0.270 4.270 24 C 0.295 3.705 25 O -0.413 6.413 26 H 0.116 0.884 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.182 0.818 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.347 0.469 0.122 0.596 hybrid contribution -1.646 0.888 0.497 1.935 sum -1.993 1.357 0.619 2.489 Atomic orbital electron populations 1.23073 0.79745 1.03785 1.01121 1.86206 1.19850 1.24756 1.89703 1.20408 0.94801 0.84479 1.11023 1.21871 0.99036 0.84902 1.02859 1.43356 1.05888 1.10996 1.56975 0.68628 1.20418 0.83806 0.95541 0.97776 1.18011 0.85277 0.83372 0.79437 1.90748 1.20164 1.83979 1.46613 1.48299 1.17145 1.08363 1.57393 1.20122 0.76347 0.99298 0.96455 1.21650 0.90574 1.46568 1.01738 0.90574 1.25101 0.98600 0.94030 0.95937 1.69932 1.16564 1.42724 1.21456 0.86452 0.80175 0.79495 0.81497 1.19773 1.20577 1.19249 1.20978 0.97049 0.82211 0.96362 1.22134 1.02337 1.01066 0.96258 1.22153 1.01242 0.96475 1.01340 1.22246 1.01534 0.90598 1.12616 1.16641 0.85951 0.89649 0.78277 1.90785 1.65762 1.37610 1.47154 0.88408 0.92976 0.92740 0.81791 0.93005 0.93030 0.91540 0.89089 0.91699 0.91872 0.92778 0.92549 0.93019 0.89973 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.21 16 2 O -0.29 -5.13 10.33 -35.62 -0.37 -5.50 16 3 C -0.06 -1.05 6.71 -39.17 -0.26 -1.31 16 4 C 0.04 0.74 10.22 -16.81 -0.17 0.56 16 5 N -0.54 -9.92 3.87 -9.58 -0.04 -9.96 16 6 H 0.45 8.62 3.39 -40.82 -0.14 8.48 16 7 C 0.14 2.68 6.25 -82.53 -0.52 2.16 16 8 C 0.55 10.86 7.53 -12.23 -0.09 10.77 16 9 O -0.54 -11.38 15.93 5.35 0.09 -11.29 16 10 N -0.58 -10.74 2.43 -168.49 -0.41 -11.15 16 11 C 0.20 3.90 4.17 -5.19 -0.02 3.88 16 12 C -0.57 -11.75 5.52 -34.44 -0.19 -11.94 16 13 H 0.08 1.62 6.84 -52.49 -0.36 1.26 16 14 C 0.07 1.51 5.42 -17.82 -0.10 1.41 16 15 N -0.87 -19.41 13.29 55.43 0.74 -18.68 16 16 Si 0.90 17.10 29.54 -169.99 -5.02 12.07 16 17 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 18 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 20 C 0.14 2.22 3.25 -67.93 -0.22 2.00 16 21 C -0.16 -2.25 9.25 37.16 0.34 -1.91 16 22 C -0.15 -2.38 8.10 37.16 0.30 -2.08 16 23 C -0.24 -4.72 9.52 -39.03 -0.37 -5.09 16 24 C 0.40 8.38 6.78 -37.02 -0.25 8.13 16 25 O -0.53 -12.51 17.71 -11.15 -0.20 -12.71 16 26 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 28 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 29 H 0.16 2.30 6.21 -52.49 -0.33 1.98 16 30 H 0.05 1.08 6.72 -51.93 -0.35 0.73 16 31 H 0.05 1.06 4.69 -51.93 -0.24 0.81 16 32 H 0.27 5.88 8.31 -40.82 -0.34 5.54 16 33 H 0.09 1.52 6.91 -51.93 -0.36 1.16 16 34 H 0.06 0.96 6.88 -51.93 -0.36 0.60 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.92 7.63 -51.93 -0.40 0.52 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.40 6.63 -51.93 -0.34 1.06 16 40 H 0.16 2.98 7.83 -52.49 -0.41 2.57 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -26.85 326.85 -5.75 -32.59 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -4.90 Total: 11.89 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -0.56 Total: 7.80 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.29 Total: -39.78 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.48 Total: -29.51 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.02 Total: 12.07 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.85 -5.75 -32.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348737675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.504 kcal (2) G-P(sol) polarization free energy of solvation -26.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds