Wall clock time and date at job start Tue Mar 31 2020 07:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36016 * 116.99567 * 2 1 4 4 C 1.35849 * 120.31321 * 359.97438 * 3 2 1 5 5 N 1.35442 * 120.77390 * 179.97438 * 4 3 2 6 6 H 0.97001 * 119.29560 * 179.97438 * 5 4 3 7 7 C 1.36427 * 121.41212 * 0.02603 * 5 4 3 8 8 C 1.48065 * 119.72036 * 179.97438 * 7 5 4 9 9 O 1.21517 * 120.00552 * 152.22150 * 8 7 5 10 10 N 1.34780 * 120.00175 * 332.21143 * 8 7 5 11 11 C 1.46506 * 119.99550 * 3.86932 * 10 8 7 12 12 C 1.50705 * 109.47107 * 96.55312 * 11 10 8 13 13 H 1.07996 * 119.99717 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99957 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99969 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00216 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47422 * 89.99783 * 16 14 12 18 18 H 1.48497 * 109.47353 * 209.99955 * 16 14 12 19 19 H 1.48511 * 109.46942 * 329.99840 * 16 14 12 20 20 C 1.46497 * 120.00667 * 183.86618 * 10 8 7 21 21 C 1.52999 * 109.47392 * 114.97216 * 20 10 8 22 22 C 1.53000 * 109.47381 * 234.97782 * 20 10 8 23 23 C 1.36179 * 120.56059 * 359.97267 * 7 5 4 24 24 C 1.41576 * 120.31050 * 179.72178 * 3 2 1 25 25 O 1.22262 * 120.65822 * 0.02562 * 24 3 2 26 26 H 1.09001 * 109.46630 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47636 * 299.99810 * 1 2 3 28 28 H 1.08997 * 109.47429 * 60.00348 * 1 2 3 29 29 H 1.08000 * 119.61639 * 359.97438 * 4 3 2 30 30 H 1.09002 * 109.46864 * 216.55229 * 11 10 8 31 31 H 1.09001 * 109.47048 * 336.55160 * 11 10 8 32 32 H 0.97009 * 119.99973 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.46921 * 354.97281 * 20 10 8 34 34 H 1.09003 * 109.47035 * 60.00134 * 21 20 10 35 35 H 1.08994 * 109.46913 * 180.02562 * 21 20 10 36 36 H 1.08997 * 109.47014 * 300.00560 * 21 20 10 37 37 H 1.08999 * 109.47708 * 59.99334 * 22 20 10 38 38 H 1.08993 * 109.47263 * 180.02562 * 22 20 10 39 39 H 1.09003 * 109.46683 * 299.99644 * 22 20 10 40 40 H 1.07994 * 120.40687 * 179.97438 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.3127 2.3553 -0.0005 5 7 1.9178 3.5670 0.0000 6 1 1.3730 4.3696 -0.0008 7 6 3.2771 3.6830 0.0005 8 6 3.8992 5.0266 0.0005 9 8 4.9992 5.1870 0.4913 10 7 3.2455 6.0719 -0.5441 11 6 1.8854 5.8971 -1.0597 12 6 0.8916 6.3268 -0.0114 13 1 1.2386 6.6930 0.9435 14 6 -0.4603 6.2524 -0.2714 15 7 -0.8827 5.8059 -1.4341 16 14 -1.6921 6.7843 1.0282 17 1 -1.9924 8.2292 0.8638 18 1 -2.9428 5.9983 0.8760 19 1 -1.1203 6.5481 2.3783 20 6 3.8949 7.3829 -0.6206 21 6 4.1090 7.7613 -2.0875 22 6 3.0074 8.4317 0.0525 23 6 4.0667 2.5735 0.0011 24 6 3.4598 1.2938 0.0059 25 8 4.1430 0.2799 0.0107 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2343 2.2973 -0.0014 30 1 1.7552 6.5054 -1.9548 31 1 1.7224 4.8480 -1.3065 32 1 -1.8340 5.7532 -1.6169 33 1 4.8580 7.3414 -0.1117 34 1 3.1459 7.8027 -2.5963 35 1 4.5926 8.7364 -2.1442 36 1 4.7413 7.0140 -2.5669 37 1 2.8548 8.1622 1.0975 38 1 3.4903 9.4072 -0.0048 39 1 2.0443 8.4732 -0.4563 40 1 5.1425 2.6682 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348737675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:11 Heat of formation + Delta-G solvation = -68.772033 kcal Electronic energy + Delta-G solvation = -24794.327116 eV Core-core repulsion = 21189.618492 eV Total energy + Delta-G solvation = -3604.708624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.67405 -40.94920 -39.05197 -38.75221 -37.81233 -35.10407 -33.42468 -32.60379 -31.32412 -29.57733 -28.42929 -27.98321 -25.77396 -25.03698 -24.17018 -22.66309 -20.96335 -19.71475 -19.13954 -18.78455 -18.30917 -17.53781 -17.14260 -17.02162 -16.58866 -16.35515 -16.00793 -15.49060 -15.24511 -15.16150 -14.85243 -14.62927 -14.43185 -14.35895 -13.90689 -13.80786 -13.41939 -13.15758 -12.93245 -12.79015 -12.63602 -12.39126 -12.30578 -12.26575 -12.08748 -11.66770 -11.54515 -11.32530 -10.74081 -10.62920 -10.45954 -9.69963 -8.68796 -8.35065 -6.54346 -0.36073 0.16705 1.40262 1.47667 1.51287 1.55944 1.71743 2.05913 2.33826 2.34167 2.61764 2.94387 3.20183 3.53897 3.73195 3.97421 4.04131 4.24778 4.35712 4.39137 4.42259 4.47619 4.52294 4.64125 4.75204 4.78140 4.85197 5.00301 5.02604 5.05918 5.09905 5.37440 5.49488 5.53827 5.59100 5.70011 5.79501 5.98194 6.25041 6.28280 6.61980 6.89190 6.95112 7.20291 8.67256 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.007232 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.796667 B = 3870.580178 C = 5690.544765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.316 6.316 3 C -0.060 4.060 4 C 0.058 3.942 5 N -0.539 5.539 6 H 0.452 0.548 7 C 0.141 3.859 8 C 0.550 3.450 9 O -0.556 6.556 10 N -0.577 5.577 11 C 0.208 3.792 12 C -0.564 4.564 13 H 0.070 0.930 14 C 0.045 3.955 15 N -0.893 5.893 16 Si 0.945 3.055 17 H -0.277 1.277 18 H -0.278 1.278 19 H -0.270 1.270 20 C 0.128 3.872 21 C -0.152 4.152 22 C -0.145 4.145 23 C -0.245 4.245 24 C 0.386 3.614 25 O -0.571 6.571 26 H 0.123 0.877 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.198 0.802 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.277 0.723 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 2.031 0.119 3.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.229 6.229 3 C -0.110 4.110 4 C -0.072 4.072 5 N -0.165 5.165 6 H 0.312 0.688 7 C 0.024 3.976 8 C 0.336 3.664 9 O -0.436 6.436 10 N -0.307 5.307 11 C 0.087 3.913 12 C -0.603 4.603 13 H 0.088 0.912 14 C -0.161 4.161 15 N -0.529 5.529 16 Si 0.771 3.229 17 H -0.203 1.203 18 H -0.203 1.203 19 H -0.195 1.195 20 C 0.026 3.974 21 C -0.210 4.210 22 C -0.203 4.203 23 C -0.272 4.272 24 C 0.283 3.717 25 O -0.463 6.463 26 H 0.141 0.859 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.215 0.785 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.797 1.462 0.236 2.328 hybrid contribution -1.269 0.643 0.445 1.490 sum -3.065 2.104 0.681 3.780 Atomic orbital electron populations 1.23471 0.76773 1.06072 1.02453 1.86182 1.22906 1.24206 1.89636 1.20194 0.94000 0.85604 1.11190 1.22254 1.00316 0.83626 1.01043 1.43404 1.05562 1.11579 1.55957 0.68776 1.20357 0.84148 0.95240 0.97848 1.18080 0.85146 0.83707 0.79446 1.90734 1.20931 1.84289 1.47628 1.48382 1.16739 1.09042 1.56528 1.19935 0.76713 0.98709 0.95899 1.21657 0.90817 1.46270 1.01510 0.91213 1.25529 0.99575 0.94000 0.96959 1.69984 1.16918 1.43510 1.22445 0.85726 0.78734 0.78759 0.79724 1.20293 1.20287 1.19494 1.21252 0.96855 0.81307 0.98026 1.22079 1.02111 1.02534 0.94290 1.22064 1.00492 0.97721 1.00041 1.22181 1.01643 0.90460 1.12934 1.17007 0.87235 0.89438 0.78044 1.90752 1.66788 1.38707 1.50011 0.85911 0.91311 0.91506 0.78495 0.93947 0.93519 0.91365 0.89361 0.92491 0.88979 0.93100 0.93817 0.89966 0.91596 0.82557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.32 -10.73 10.33 -78.60 -0.81 -11.54 16 3 C -0.06 -2.17 6.71 22.54 0.15 -2.01 16 4 C 0.06 1.85 10.22 83.58 0.85 2.71 16 5 N -0.54 -19.01 3.87 -184.22 -0.71 -19.73 16 6 H 0.45 16.57 3.39 -92.71 -0.31 16.25 16 7 C 0.14 5.33 6.25 40.56 0.25 5.58 16 8 C 0.55 21.45 7.53 86.85 0.65 22.10 16 9 O -0.56 -23.54 15.93 -3.77 -0.06 -23.60 16 10 N -0.58 -20.91 2.43 -805.27 -1.95 -22.86 16 11 C 0.21 8.02 4.17 85.63 0.36 8.37 16 12 C -0.56 -22.66 5.52 25.60 0.14 -22.52 16 13 H 0.07 2.89 6.84 -2.91 -0.02 2.87 16 14 C 0.05 1.84 5.42 84.65 0.46 2.29 16 15 N -0.89 -38.33 13.29 21.45 0.28 -38.04 16 16 Si 0.95 33.60 29.54 68.60 2.03 35.62 16 17 H -0.28 -10.05 7.11 99.48 0.71 -9.35 16 18 H -0.28 -9.72 7.11 99.48 0.71 -9.02 16 19 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 20 C 0.13 3.98 3.25 44.99 0.15 4.13 16 21 C -0.15 -4.01 9.25 71.98 0.67 -3.35 16 22 C -0.15 -4.25 8.10 71.98 0.58 -3.67 16 23 C -0.24 -9.67 9.52 22.63 0.22 -9.46 16 24 C 0.39 16.36 6.78 23.93 0.16 16.52 16 25 O -0.57 -28.04 17.71 8.95 0.16 -27.88 16 26 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 1.24 7.66 -2.39 -0.02 1.22 16 28 H 0.07 1.26 7.66 -2.39 -0.02 1.25 16 29 H 0.20 4.89 6.21 -2.91 -0.02 4.87 16 30 H 0.04 1.73 6.72 -2.39 -0.02 1.72 16 31 H 0.05 1.87 4.69 -2.39 -0.01 1.86 16 32 H 0.28 11.37 8.31 -92.70 -0.77 10.60 16 33 H 0.09 2.84 6.91 -2.39 -0.02 2.82 16 34 H 0.06 1.60 6.88 -2.39 -0.02 1.58 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.04 1.37 7.63 -2.39 -0.02 1.35 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 2.15 6.63 -2.39 -0.02 2.14 16 40 H 0.16 6.11 7.83 -2.91 -0.02 6.08 16 Total: -1.00 -57.19 326.85 5.45 -51.73 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.77 Total: 34.34 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 5.76 Total: 21.95 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.38 Total: -80.63 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -0.71 Total: -63.02 kcal Atomic # 14 Polarization: 33.60 SS G_CDS: 2.03 Total: 35.62 kcal Total: -57.19 5.45 -51.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348737675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.038 kcal (2) G-P(sol) polarization free energy of solvation -57.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds