Wall clock time and date at job start Tue Mar 31 2020 06:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.47196 * 109.47016 * 2 1 4 4 N 2.60798 * 109.47095 * 359.97438 * 2 1 3 5 5 C 1.53000 * 109.47233 * 120.00385 * 2 1 3 6 6 C 1.50703 * 109.46912 * 299.99748 * 5 2 1 7 7 O 1.20824 * 120.00141 * 0.02562 * 6 5 2 8 8 O 1.34226 * 119.99900 * 180.02562 * 6 5 2 9 9 C 1.50703 * 109.46966 * 240.00100 * 2 1 3 10 10 O 1.21278 * 119.99985 * 240.00308 * 9 2 1 11 11 N 1.34777 * 120.00161 * 59.99615 * 9 2 1 12 12 C 1.46496 * 120.00271 * 179.97438 * 11 9 2 13 13 H 1.08995 * 110.01553 * 325.06724 * 12 11 9 14 14 C 1.53882 * 110.02936 * 86.45587 * 12 11 9 15 15 C 1.54266 * 106.59695 * 119.28557 * 14 12 11 16 16 C 1.54899 * 104.19672 * 23.61137 * 15 14 12 17 17 H 1.08997 * 110.75803 * 80.36593 * 16 15 14 18 18 C 1.50690 * 110.75440 * 203.55927 * 16 15 14 19 19 H 1.08004 * 120.00339 * 118.54483 * 18 16 15 20 20 C 1.37881 * 120.00366 * 298.54190 * 18 16 15 21 21 N 1.31517 * 119.99406 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 120.00204 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47334 * 60.00090 * 22 20 18 24 24 H 1.48504 * 109.47038 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47384 * 299.99687 * 22 20 18 26 26 C 1.54262 * 110.03383 * 203.62384 * 12 11 9 27 27 H 1.09000 * 109.46986 * 299.99818 * 1 2 3 28 28 H 1.08993 * 109.47662 * 60.00041 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 59.99826 * 5 2 1 31 31 H 1.09001 * 109.47194 * 180.02562 * 5 2 1 32 32 H 0.96704 * 117.00221 * 179.97438 * 8 6 5 33 33 H 0.97005 * 119.99463 * 0.02562 * 11 9 2 34 34 H 1.09000 * 110.03297 * 238.56829 * 14 12 11 35 35 H 1.09000 * 110.03100 * 0.02562 * 14 12 11 36 36 H 1.09005 * 110.48828 * 142.28565 * 15 14 12 37 37 H 1.08999 * 110.48948 * 264.93039 * 15 14 12 38 38 H 0.96998 * 119.99392 * 180.02562 * 21 20 18 39 39 H 1.08999 * 110.48648 * 335.78106 * 26 12 11 40 40 H 1.08998 * 110.49167 * 98.42801 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0206 1.3878 0.0000 4 7 2.3993 2.4588 -0.0011 5 6 2.0401 -0.7213 1.2492 6 6 1.5377 -0.0109 2.4797 7 8 0.8428 0.9712 2.3689 8 8 1.8625 -0.4693 3.6988 9 6 2.0323 -0.7104 -1.2305 10 8 2.7295 -1.6965 -1.1193 11 7 1.7067 -0.2500 -2.4546 12 6 2.1954 -0.9402 -3.6508 13 1 3.1945 -1.3368 -3.4706 14 6 1.2356 -2.0817 -4.0297 15 6 0.7099 -1.7640 -5.4448 16 6 1.7952 -0.8426 -6.0552 17 1 2.6374 -1.4287 -6.4227 18 6 1.2165 0.0066 -7.1574 19 1 1.2218 1.0830 -7.0694 20 6 0.6802 -0.5906 -8.2786 21 7 0.6733 -1.9014 -8.3857 22 14 -0.0364 0.4620 -9.6452 23 1 1.0181 1.3572 -10.1853 24 1 -0.5456 -0.4149 -10.7302 25 1 -1.1522 1.2804 -9.1063 26 6 2.2195 0.0313 -4.8488 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2494 32 1 1.5170 0.0199 4.4581 33 1 1.1492 0.5389 -2.5435 34 1 1.7691 -3.0322 -4.0344 35 1 0.4059 -2.1218 -3.3239 36 1 0.6128 -2.6785 -6.0300 37 1 -0.2457 -1.2426 -5.3887 38 1 0.2964 -2.3215 -9.1745 39 1 1.5077 0.8426 -4.6964 40 1 3.2239 0.4271 -4.9990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588541504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:35 Heat of formation + Delta-G solvation = -113.444917 kcal Electronic energy + Delta-G solvation = -23621.873747 eV Core-core repulsion = 20015.227961 eV Total energy + Delta-G solvation = -3606.645785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26244 -40.01911 -37.67139 -36.93011 -36.34657 -34.43692 -33.84040 -32.01548 -29.08606 -28.22917 -27.16789 -25.30399 -23.86030 -22.00531 -21.43875 -19.90278 -19.29304 -18.67507 -18.37682 -16.74013 -16.66198 -16.23585 -15.95363 -15.70214 -15.14080 -14.63864 -14.33510 -14.12652 -14.10097 -13.62062 -13.34280 -12.92345 -12.81490 -12.69794 -12.51260 -12.40810 -12.03023 -11.85592 -11.74968 -11.70758 -11.20209 -11.09615 -10.95667 -10.83715 -10.64305 -10.36794 -10.04412 -9.81006 -9.57687 -9.27944 -8.88568 -8.78810 -8.39894 -6.04016 -4.07617 1.75786 2.20346 2.33213 2.45860 2.67643 3.25867 3.29811 3.35054 3.37488 3.56232 3.98239 4.37445 4.41113 4.55682 4.87450 4.99032 5.15718 5.27790 5.33165 5.38921 5.46121 5.56784 5.72621 5.78711 6.14330 6.17161 6.25812 6.49451 6.57573 6.66015 6.77392 6.85322 7.18990 7.25114 7.25224 7.44861 7.51170 7.67999 7.84090 7.98693 8.09150 8.38779 8.94139 9.56820 11.04988 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.032255 B = 0.003166 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.873489 B = 8841.453605 C = 9170.613775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.035 3.965 3 C 0.212 3.788 4 N -0.400 5.400 5 C -0.093 4.093 6 C 0.479 3.521 7 O -0.506 6.506 8 O -0.512 6.512 9 C 0.527 3.473 10 O -0.525 6.525 11 N -0.705 5.705 12 C 0.137 3.863 13 H 0.084 0.916 14 C -0.134 4.134 15 C -0.101 4.101 16 C 0.053 3.947 17 H 0.033 0.967 18 C -0.516 4.516 19 H 0.055 0.945 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 C -0.123 4.123 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.124 0.876 32 H 0.413 0.587 33 H 0.400 0.600 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.261 0.739 39 H 0.061 0.939 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 -0.125 20.649 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 C -0.108 4.108 4 N -0.075 5.075 5 C -0.131 4.131 6 C 0.322 3.678 7 O -0.394 6.394 8 O -0.324 6.324 9 C 0.309 3.691 10 O -0.401 6.401 11 N -0.354 5.354 12 C 0.034 3.966 13 H 0.102 0.898 14 C -0.173 4.173 15 C -0.139 4.139 16 C 0.034 3.966 17 H 0.051 0.949 18 C -0.555 4.555 19 H 0.073 0.927 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.161 4.161 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.155 0.845 31 H 0.142 0.858 32 H 0.272 0.728 33 H 0.235 0.765 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.494 0.684 20.198 20.216 hybrid contribution -1.114 0.871 -0.303 1.446 sum -0.619 1.555 19.895 19.965 Atomic orbital electron populations 1.22219 0.88526 1.04861 1.05954 1.18231 0.99381 0.84393 0.95254 1.28173 0.94093 0.94069 0.94417 1.81206 1.07975 1.11334 1.06942 1.21193 1.04932 1.01227 0.85778 1.23278 0.77095 0.82422 0.85015 1.90719 1.35716 1.26025 1.86975 1.84520 1.72202 1.58926 1.16704 1.19567 0.80833 0.84781 0.83924 1.90748 1.37300 1.25840 1.86252 1.46367 1.52167 1.31388 1.05514 1.22014 0.97968 0.93782 0.82850 0.89797 1.22656 0.97916 0.97061 0.99623 1.22325 0.99098 1.01283 0.91236 1.19542 0.94246 0.92472 0.90339 0.94923 1.21043 1.39230 0.92753 1.02428 0.92723 1.24962 0.95886 0.94899 0.98067 1.69944 1.45465 1.08411 1.28796 0.86699 0.79491 0.80273 0.81756 1.20326 1.21336 1.20330 1.22784 1.00477 0.97893 0.94932 0.88236 0.90546 0.89784 0.84458 0.85756 0.72781 0.76514 0.92295 0.92962 0.91087 0.93417 0.92972 0.92006 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.04 37.16 0.30 -1.01 16 2 C 0.03 0.35 0.57 -158.45 -0.09 0.26 16 3 C 0.21 2.65 11.82 -20.76 -0.25 2.40 16 4 N -0.40 -5.95 18.54 42.15 0.78 -5.17 16 5 C -0.09 -0.74 4.15 -27.88 -0.12 -0.85 16 6 C 0.48 3.90 7.75 36.01 0.28 4.18 16 7 O -0.51 -5.44 13.25 -18.75 -0.25 -5.69 16 8 O -0.51 -3.01 13.42 -39.25 -0.53 -3.53 16 9 C 0.53 6.70 6.44 -10.98 -0.07 6.63 16 10 O -0.53 -7.94 15.66 5.56 0.09 -7.86 16 11 N -0.70 -9.56 4.78 -52.72 -0.25 -9.82 16 12 C 0.14 2.27 3.23 -66.81 -0.22 2.05 16 13 H 0.08 1.45 7.61 -51.93 -0.39 1.05 16 14 C -0.13 -2.36 6.59 -25.61 -0.17 -2.53 16 15 C -0.10 -2.20 5.57 -25.07 -0.14 -2.34 16 16 C 0.05 1.23 2.81 -89.78 -0.25 0.98 16 17 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.52 -13.54 8.55 -34.44 -0.29 -13.83 16 19 H 0.05 1.41 7.79 -52.48 -0.41 1.01 16 20 C 0.06 1.71 5.33 -17.82 -0.10 1.62 16 21 N -0.89 -24.67 12.01 55.43 0.67 -24.01 16 22 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.12 -2.31 5.95 -25.07 -0.15 -2.46 16 27 H 0.10 0.88 5.52 -51.93 -0.29 0.59 16 28 H 0.08 0.62 7.56 -51.93 -0.39 0.23 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.14 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.12 0.96 8.10 -51.93 -0.42 0.54 16 32 H 0.41 0.78 9.10 45.56 0.41 1.19 16 33 H 0.40 4.86 7.63 -40.82 -0.31 4.54 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.84 7.92 -51.93 -0.41 0.43 16 36 H 0.07 1.71 7.37 -51.93 -0.38 1.33 16 37 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 39 H 0.06 1.13 7.63 -51.93 -0.40 0.74 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -32.07 338.55 -5.33 -37.39 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.65 Total: 2.75 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.26 Total: -4.91 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 1.20 Total: -38.99 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.69 Total: -17.08 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.07 -5.33 -37.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588541504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.052 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds