Wall clock time and date at job start Tue Mar 31 2020 06:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.47196 * 109.47016 * 2 1 4 4 N 2.60798 * 109.47095 * 359.97438 * 2 1 3 5 5 C 1.53000 * 109.47233 * 120.00385 * 2 1 3 6 6 C 1.50703 * 109.46912 * 299.99748 * 5 2 1 7 7 O 1.20824 * 120.00141 * 0.02562 * 6 5 2 8 8 O 1.34226 * 119.99900 * 180.02562 * 6 5 2 9 9 C 1.50703 * 109.46966 * 240.00100 * 2 1 3 10 10 O 1.21278 * 119.99985 * 240.00308 * 9 2 1 11 11 N 1.34777 * 120.00161 * 59.99615 * 9 2 1 12 12 C 1.46496 * 120.00271 * 179.97438 * 11 9 2 13 13 H 1.08995 * 110.01553 * 325.06724 * 12 11 9 14 14 C 1.53882 * 110.02936 * 86.45587 * 12 11 9 15 15 C 1.54266 * 106.59695 * 119.28557 * 14 12 11 16 16 C 1.54899 * 104.19672 * 23.61137 * 15 14 12 17 17 H 1.08997 * 110.75803 * 80.36593 * 16 15 14 18 18 C 1.50690 * 110.75440 * 203.55927 * 16 15 14 19 19 H 1.08004 * 120.00339 * 118.54483 * 18 16 15 20 20 C 1.37881 * 120.00366 * 298.54190 * 18 16 15 21 21 N 1.31517 * 119.99406 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 120.00204 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47334 * 60.00090 * 22 20 18 24 24 H 1.48504 * 109.47038 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47384 * 299.99687 * 22 20 18 26 26 C 1.54262 * 110.03383 * 203.62384 * 12 11 9 27 27 H 1.09000 * 109.46986 * 299.99818 * 1 2 3 28 28 H 1.08993 * 109.47662 * 60.00041 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 59.99826 * 5 2 1 31 31 H 1.09001 * 109.47194 * 180.02562 * 5 2 1 32 32 H 0.96704 * 117.00221 * 179.97438 * 8 6 5 33 33 H 0.97005 * 119.99463 * 0.02562 * 11 9 2 34 34 H 1.09000 * 110.03297 * 238.56829 * 14 12 11 35 35 H 1.09000 * 110.03100 * 0.02562 * 14 12 11 36 36 H 1.09005 * 110.48828 * 142.28565 * 15 14 12 37 37 H 1.08999 * 110.48948 * 264.93039 * 15 14 12 38 38 H 0.96998 * 119.99392 * 180.02562 * 21 20 18 39 39 H 1.08999 * 110.48648 * 335.78106 * 26 12 11 40 40 H 1.08998 * 110.49167 * 98.42801 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0206 1.3878 0.0000 4 7 2.3993 2.4588 -0.0011 5 6 2.0401 -0.7213 1.2492 6 6 1.5377 -0.0109 2.4797 7 8 0.8428 0.9712 2.3689 8 8 1.8625 -0.4693 3.6988 9 6 2.0323 -0.7104 -1.2305 10 8 2.7295 -1.6965 -1.1193 11 7 1.7067 -0.2500 -2.4546 12 6 2.1954 -0.9402 -3.6508 13 1 3.1945 -1.3368 -3.4706 14 6 1.2356 -2.0817 -4.0297 15 6 0.7099 -1.7640 -5.4448 16 6 1.7952 -0.8426 -6.0552 17 1 2.6374 -1.4287 -6.4227 18 6 1.2165 0.0066 -7.1574 19 1 1.2218 1.0830 -7.0694 20 6 0.6802 -0.5906 -8.2786 21 7 0.6733 -1.9014 -8.3857 22 14 -0.0364 0.4620 -9.6452 23 1 1.0181 1.3572 -10.1853 24 1 -0.5456 -0.4149 -10.7302 25 1 -1.1522 1.2804 -9.1063 26 6 2.2195 0.0313 -4.8488 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2494 32 1 1.5170 0.0199 4.4581 33 1 1.1492 0.5389 -2.5435 34 1 1.7691 -3.0322 -4.0344 35 1 0.4059 -2.1218 -3.3239 36 1 0.6128 -2.6785 -6.0300 37 1 -0.2457 -1.2426 -5.3887 38 1 0.2964 -2.3215 -9.1745 39 1 1.5077 0.8426 -4.6964 40 1 3.2239 0.4271 -4.9990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588541504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:34 Heat of formation + Delta-G solvation = -135.271388 kcal Electronic energy + Delta-G solvation = -23622.820214 eV Core-core repulsion = 20015.227961 eV Total energy + Delta-G solvation = -3607.592252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.06335 -40.92038 -38.97152 -37.99917 -37.04829 -35.40156 -35.27748 -33.75009 -30.03126 -29.74921 -28.58829 -26.35407 -25.51876 -22.75279 -22.42876 -21.39720 -20.83080 -19.71121 -19.04183 -18.48859 -17.35229 -17.15234 -16.91771 -16.77163 -16.59705 -16.26876 -15.57836 -15.38267 -15.05472 -14.50719 -14.47200 -14.04541 -13.99950 -13.84838 -13.62571 -13.57373 -13.18201 -13.00166 -12.78790 -12.77466 -12.58796 -12.44843 -12.41229 -12.35644 -12.08670 -11.64872 -11.52219 -11.32247 -11.09195 -10.87553 -10.78201 -10.43026 -10.06708 -8.08457 -6.18105 1.16158 1.19592 1.44387 1.44754 1.46869 1.49701 1.52193 1.87802 2.33536 2.46154 2.66384 3.22460 3.23144 3.56762 3.66662 3.97246 4.06138 4.24883 4.35946 4.40106 4.58457 4.74086 4.74839 4.78026 4.78868 4.96196 5.02685 5.13854 5.18332 5.19671 5.28799 5.44227 5.65668 5.67122 5.69575 5.99047 6.03869 6.28696 6.39355 6.41606 6.92024 6.97762 7.03419 7.49350 8.99449 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.032255 B = 0.003166 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.873489 B = 8841.453605 C = 9170.613775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.044 3.956 3 C 0.230 3.770 4 N -0.444 5.444 5 C -0.095 4.095 6 C 0.487 3.513 7 O -0.536 6.536 8 O -0.506 6.506 9 C 0.534 3.466 10 O -0.544 6.544 11 N -0.703 5.703 12 C 0.151 3.849 13 H 0.081 0.919 14 C -0.122 4.122 15 C -0.091 4.091 16 C 0.040 3.960 17 H 0.002 0.998 18 C -0.531 4.531 19 H 0.054 0.946 20 C 0.014 3.986 21 N -0.917 5.917 22 Si 0.949 3.051 23 H -0.274 1.274 24 H -0.287 1.287 25 H -0.270 1.270 26 C -0.112 4.112 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.161 0.839 31 H 0.128 0.872 32 H 0.431 0.569 33 H 0.409 0.591 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.259 0.741 39 H 0.069 0.931 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.064 0.045 22.308 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 C -0.089 4.089 4 N -0.120 5.120 5 C -0.133 4.133 6 C 0.331 3.669 7 O -0.427 6.427 8 O -0.320 6.320 9 C 0.317 3.683 10 O -0.421 6.421 11 N -0.354 5.354 12 C 0.047 3.953 13 H 0.100 0.900 14 C -0.160 4.160 15 C -0.130 4.130 16 C 0.022 3.978 17 H 0.020 0.980 18 C -0.569 4.569 19 H 0.072 0.928 20 C -0.185 4.185 21 N -0.556 5.556 22 Si 0.775 3.225 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.195 1.195 26 C -0.150 4.150 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.179 0.821 31 H 0.146 0.854 32 H 0.293 0.707 33 H 0.245 0.755 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.067 0.872 21.900 21.917 hybrid contribution -0.901 0.782 -0.778 1.424 sum -0.968 1.654 21.122 21.209 Atomic orbital electron populations 1.22281 0.86872 1.06305 1.06019 1.18286 1.00493 0.82707 0.94781 1.28599 0.92874 0.94326 0.93056 1.81222 1.09525 1.12819 1.08414 1.21278 1.05240 1.02044 0.84752 1.23190 0.76350 0.81734 0.85613 1.90724 1.37207 1.27292 1.87442 1.84476 1.71869 1.58942 1.16717 1.19843 0.79996 0.84396 0.84079 1.90750 1.37970 1.26864 1.86562 1.46198 1.52497 1.31626 1.05036 1.21593 0.97669 0.92790 0.83230 0.90044 1.22519 0.98723 0.97495 0.97284 1.22085 0.98267 0.99275 0.93362 1.19526 0.93641 0.93072 0.91601 0.98024 1.21446 1.38924 0.93105 1.03470 0.92781 1.25705 0.96481 0.95947 1.00342 1.70075 1.46411 1.09783 1.29306 0.85752 0.78895 0.78758 0.79069 1.19975 1.21279 1.19544 1.22589 1.00683 0.97742 0.93998 0.88409 0.90314 0.87666 0.82146 0.85371 0.70673 0.75478 0.92235 0.90792 0.94170 0.94380 0.93167 0.91287 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.04 71.98 0.58 -1.60 16 2 C 0.04 0.78 0.57 -54.73 -0.03 0.75 16 3 C 0.23 5.39 11.82 89.44 1.06 6.45 16 4 N -0.44 -12.84 18.54 20.00 0.37 -12.47 16 5 C -0.09 -1.25 4.15 29.85 0.12 -1.12 16 6 C 0.49 6.76 7.75 71.24 0.55 7.31 16 7 O -0.54 -10.53 13.25 21.97 0.29 -10.24 16 8 O -0.51 -4.58 13.42 -51.38 -0.69 -5.27 16 9 C 0.53 12.21 6.44 87.66 0.56 12.78 16 10 O -0.54 -15.06 15.66 -3.02 -0.05 -15.11 16 11 N -0.70 -17.50 4.78 -439.11 -2.10 -19.60 16 12 C 0.15 4.79 3.23 45.72 0.15 4.94 16 13 H 0.08 2.68 7.61 -2.39 -0.02 2.66 16 14 C -0.12 -4.14 6.59 31.32 0.21 -3.93 16 15 C -0.09 -4.01 5.57 31.67 0.18 -3.83 16 16 C 0.04 1.91 2.81 -10.25 -0.03 1.89 16 17 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 18 C -0.53 -28.13 8.55 25.60 0.22 -27.91 16 19 H 0.05 2.79 7.79 -2.91 -0.02 2.77 16 20 C 0.01 0.77 5.33 84.66 0.45 1.23 16 21 N -0.92 -52.03 12.01 21.45 0.26 -51.77 16 22 Si 0.95 42.72 29.54 68.60 2.03 44.75 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 24 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 C -0.11 -4.14 5.95 31.67 0.19 -3.96 16 27 H 0.10 1.49 5.52 -2.39 -0.01 1.48 16 28 H 0.08 1.07 7.56 -2.39 -0.02 1.05 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.16 1.39 8.10 -2.39 -0.02 1.38 16 31 H 0.13 1.64 8.10 -2.39 -0.02 1.62 16 32 H 0.43 0.51 9.10 -74.05 -0.67 -0.16 16 33 H 0.41 8.96 7.63 -92.70 -0.71 8.26 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.07 2.20 7.92 -2.39 -0.02 2.18 16 36 H 0.04 1.98 7.37 -2.38 -0.02 1.96 16 37 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 38 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 39 H 0.07 2.44 7.63 -2.39 -0.02 2.42 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -69.47 338.55 4.02 -65.45 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -0.29 Total: 11.28 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 4.21 Total: -7.01 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -1.47 Total: -83.84 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.45 Total: -30.62 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -69.47 4.02 -65.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588541504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.818 kcal (2) G-P(sol) polarization free energy of solvation -69.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds