Wall clock time and date at job start Tue Mar 31 2020 07:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47255 * 2 1 4 4 C 1.50700 * 109.47446 * 120.00461 * 2 1 3 5 5 N 1.29923 * 125.36400 * 254.99913 * 4 2 1 6 6 C 1.36108 * 108.47077 * 179.97438 * 5 4 2 7 7 C 1.47274 * 126.45882 * 180.02562 * 6 5 4 8 8 O 1.21533 * 119.99786 * 179.97438 * 7 6 5 9 9 O 1.34775 * 120.00168 * 0.02562 * 7 6 5 10 10 C 1.36174 * 107.08082 * 359.97438 * 6 5 4 11 11 O 1.34054 * 125.37330 * 74.68760 * 4 2 1 12 12 N 1.46910 * 109.46906 * 239.99992 * 2 1 3 13 13 C 1.46842 * 110.99703 * 183.95553 * 12 2 1 14 14 C 1.53039 * 109.52266 * 174.16402 * 13 12 2 15 15 C 1.53123 * 109.31189 * 59.15550 * 14 13 12 16 16 C 1.53129 * 109.15931 * 302.40768 * 15 14 13 17 17 H 1.09005 * 109.49844 * 297.63523 * 16 15 14 18 18 C 1.50693 * 109.50308 * 177.55494 * 16 15 14 19 19 H 1.08002 * 119.99976 * 240.15194 * 18 16 15 20 20 C 1.37880 * 120.00049 * 60.16172 * 18 16 15 21 21 N 1.31509 * 119.99980 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99853 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47638 * 59.99603 * 22 20 18 24 24 H 1.48505 * 109.47005 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47224 * 299.99438 * 22 20 18 26 26 C 1.46849 * 110.99768 * 59.74633 * 12 2 1 27 27 H 1.09000 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47258 * 299.99799 * 1 2 3 29 29 H 1.08994 * 109.47842 * 59.99830 * 1 2 3 30 30 H 0.96695 * 117.00174 * 180.02562 * 9 7 6 31 31 H 1.08000 * 126.52943 * 179.97438 * 10 6 5 32 32 H 1.08995 * 109.46659 * 54.14295 * 13 12 2 33 33 H 1.09009 * 109.46400 * 294.17124 * 13 12 2 34 34 H 1.09002 * 109.50563 * 179.11883 * 14 13 12 35 35 H 1.09003 * 109.50107 * 299.19864 * 14 13 12 36 36 H 1.09000 * 109.52057 * 62.27355 * 15 14 13 37 37 H 1.08995 * 109.52240 * 182.46183 * 15 14 13 38 38 H 0.97003 * 120.00089 * 180.02562 * 21 20 18 39 39 H 1.09001 * 109.46071 * 305.85100 * 26 12 2 40 40 H 1.09002 * 109.46350 * 65.83217 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.5416 -0.1330 2.2769 6 6 2.8787 -1.0949 3.1789 7 6 3.4865 -0.8787 4.5029 8 8 3.7401 -1.8284 5.2175 9 8 3.7606 0.3724 4.9224 10 6 2.5471 -2.2948 2.6270 11 8 2.0189 -2.0375 1.4201 12 7 2.0196 -0.6925 -1.1995 13 6 3.4844 -0.7946 -1.1871 14 6 3.9479 -1.6448 -2.3722 15 6 3.4737 -0.9973 -3.6762 16 6 1.9492 -0.8576 -3.6425 17 1 1.4945 -1.8463 -3.5797 18 6 1.4795 -0.1665 -4.8966 19 1 0.9449 0.7695 -4.8294 20 6 1.7320 -0.7292 -6.1297 21 7 2.3833 -1.8688 -6.2115 22 14 1.1492 0.1271 -7.6842 23 1 1.7700 1.4734 -7.7702 24 1 1.5436 -0.6760 -8.8694 25 1 -0.3290 0.2650 -7.6488 26 6 1.5437 -0.0301 -2.4207 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 4.1596 0.4642 5.7984 31 1 2.6807 -3.2679 3.0760 32 1 3.8081 -1.2611 -0.2567 33 1 3.9186 0.2024 -1.2636 34 1 5.0361 -1.7074 -2.3716 35 1 3.5258 -2.6463 -2.2887 36 1 3.9271 -0.0114 -3.7792 37 1 3.7642 -1.6228 -4.5202 38 1 2.5613 -2.2646 -7.0791 39 1 0.4579 0.0585 -2.3862 40 1 1.9871 0.9631 -2.4914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593725760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:55 Heat of formation + Delta-G solvation = -67.088490 kcal Electronic energy + Delta-G solvation = -23889.271228 eV Core-core repulsion = 20284.635608 eV Total energy + Delta-G solvation = -3604.635620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.65087 -40.21309 -38.62913 -36.39382 -35.13575 -34.63949 -32.58834 -30.69869 -29.93234 -29.02274 -25.49311 -25.14454 -24.36315 -22.55324 -21.77779 -21.34938 -20.11240 -18.75372 -18.53307 -17.76945 -17.08461 -16.53584 -16.37508 -15.73479 -15.40418 -15.13740 -14.45914 -14.15242 -13.91137 -13.59475 -13.41624 -12.97799 -12.74613 -12.59291 -12.16850 -11.97011 -11.86350 -11.51326 -11.43748 -11.27818 -11.20410 -10.95478 -10.92675 -10.75418 -10.72504 -10.18875 -9.89426 -9.52740 -9.30089 -9.09929 -8.75993 -8.34607 -7.91324 -6.00770 -4.07379 0.72722 1.68437 2.35758 2.67402 2.80586 3.30474 3.35703 3.37505 3.60149 4.24216 4.43368 4.49529 4.85675 5.10079 5.14630 5.29447 5.33884 5.40459 5.48577 5.68484 5.70830 5.79841 5.92895 5.96506 6.08231 6.14362 6.19390 6.29686 6.42249 6.62384 6.67990 6.86156 7.12990 7.20321 7.34535 7.46732 7.58938 7.64859 7.72670 8.02148 8.12256 8.42196 8.96247 9.57255 11.05234 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036502 B = 0.003284 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.902452 B = 8523.859636 C = 8805.492809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.170 3.830 3 H 0.083 0.917 4 C 0.232 3.768 5 N -0.453 5.453 6 C -0.070 4.070 7 C 0.579 3.421 8 O -0.514 6.514 9 O -0.494 6.494 10 C 0.027 3.973 11 O -0.168 6.168 12 N -0.531 5.531 13 C 0.062 3.938 14 C -0.115 4.115 15 C -0.112 4.112 16 C 0.057 3.943 17 H 0.036 0.964 18 C -0.517 4.517 19 H 0.054 0.946 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.891 3.109 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.065 3.935 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.414 0.586 31 H 0.233 0.767 32 H 0.050 0.950 33 H 0.030 0.970 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.031 0.969 37 H 0.092 0.908 38 H 0.261 0.739 39 H 0.070 0.930 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.539 1.501 17.444 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.060 3.940 3 H 0.101 0.899 4 C 0.022 3.978 5 N -0.182 5.182 6 C -0.188 4.188 7 C 0.422 3.578 8 O -0.403 6.403 9 O -0.304 6.304 10 C -0.048 4.048 11 O -0.052 6.052 12 N -0.257 5.257 13 C -0.065 4.065 14 C -0.153 4.153 15 C -0.150 4.150 16 C 0.038 3.962 17 H 0.054 0.946 18 C -0.556 4.556 19 H 0.072 0.928 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.719 3.281 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.061 4.061 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.273 0.727 31 H 0.249 0.751 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.376 1.261 17.168 17.218 hybrid contribution 0.418 0.555 -0.177 0.717 sum 0.794 1.817 16.991 17.106 Atomic orbital electron populations 1.21942 0.91699 1.03847 1.02981 1.20188 0.96547 0.94059 0.83230 0.89923 1.26455 0.97196 0.77179 0.97010 1.70908 1.14619 1.31951 1.00724 1.20468 1.11704 0.90563 0.96113 1.19092 0.73999 0.80643 0.84024 1.90945 1.50957 1.43004 1.55396 1.84682 1.75118 1.30159 1.40459 1.25380 0.95380 1.00602 0.83475 1.84575 1.60749 1.28260 1.31619 1.62183 1.10603 1.51787 1.01134 1.22072 0.86938 0.98779 0.98751 1.21664 0.98424 0.99493 0.95716 1.21681 0.98731 0.99032 0.95516 1.18659 0.92226 0.95751 0.89559 0.94555 1.21080 1.36327 1.07417 0.90752 0.92775 1.24924 0.95061 0.94851 0.98912 1.69875 1.40461 1.17732 1.24535 0.86683 0.79194 0.79524 0.82711 1.20371 1.21345 1.20274 1.22474 0.99330 0.95865 0.88429 0.90935 0.91925 0.89904 0.72720 0.75123 0.93186 0.95222 0.93373 0.91931 0.95007 0.88954 0.92948 0.91140 0.95653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.95 37.15 0.33 -1.50 16 2 C 0.17 2.46 2.62 -68.86 -0.18 2.28 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.23 3.36 5.39 -13.09 -0.07 3.29 16 5 N -0.45 -6.70 11.36 -7.67 -0.09 -6.79 16 6 C -0.07 -0.92 7.04 -83.04 -0.58 -1.51 16 7 C 0.58 6.91 8.33 34.40 0.29 7.20 16 8 O -0.51 -6.69 17.68 -19.29 -0.34 -7.03 16 9 O -0.49 -4.83 13.44 -40.69 -0.55 -5.38 16 10 C 0.03 0.31 11.95 29.99 0.36 0.67 16 11 O -0.17 -2.31 10.55 6.58 0.07 -2.24 16 12 N -0.53 -9.16 4.52 -228.07 -1.03 -10.19 16 13 C 0.06 1.08 5.23 -3.84 -0.02 1.06 16 14 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 15 C -0.11 -2.54 5.03 -26.60 -0.13 -2.67 16 16 C 0.06 1.35 2.26 -91.69 -0.21 1.14 16 17 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 18 C -0.52 -13.55 8.56 -34.44 -0.29 -13.84 16 19 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -24.64 11.36 55.43 0.63 -24.01 16 22 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.06 1.26 4.44 -3.83 -0.02 1.25 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.08 1.02 6.28 -51.93 -0.33 0.70 16 30 H 0.41 1.73 9.11 45.56 0.42 2.15 16 31 H 0.23 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.05 0.83 6.62 -51.93 -0.34 0.48 16 33 H 0.03 0.52 8.14 -51.92 -0.42 0.09 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 2.37 6.16 -51.93 -0.32 2.05 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 39 H 0.07 1.30 6.00 -51.93 -0.31 0.99 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -30.85 332.51 -6.76 -37.61 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.66 Total: 0.73 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.79 Total: -3.37 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.49 Total: -40.98 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.82 Total: -14.65 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.85 -6.76 -37.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593725760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.479 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds