Wall clock time and date at job start Tue Mar 31 2020 07:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47255 * 2 1 4 4 C 1.50700 * 109.47446 * 120.00461 * 2 1 3 5 5 N 1.29923 * 125.36400 * 254.99913 * 4 2 1 6 6 C 1.36108 * 108.47077 * 179.97438 * 5 4 2 7 7 C 1.47274 * 126.45882 * 180.02562 * 6 5 4 8 8 O 1.21533 * 119.99786 * 179.97438 * 7 6 5 9 9 O 1.34775 * 120.00168 * 0.02562 * 7 6 5 10 10 C 1.36174 * 107.08082 * 359.97438 * 6 5 4 11 11 O 1.34054 * 125.37330 * 74.68760 * 4 2 1 12 12 N 1.46910 * 109.46906 * 239.99992 * 2 1 3 13 13 C 1.46842 * 110.99703 * 183.95553 * 12 2 1 14 14 C 1.53039 * 109.52266 * 174.16402 * 13 12 2 15 15 C 1.53123 * 109.31189 * 59.15550 * 14 13 12 16 16 C 1.53129 * 109.15931 * 302.40768 * 15 14 13 17 17 H 1.09005 * 109.49844 * 297.63523 * 16 15 14 18 18 C 1.50693 * 109.50308 * 177.55494 * 16 15 14 19 19 H 1.08002 * 119.99976 * 240.15194 * 18 16 15 20 20 C 1.37880 * 120.00049 * 60.16172 * 18 16 15 21 21 N 1.31509 * 119.99980 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99853 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47638 * 59.99603 * 22 20 18 24 24 H 1.48505 * 109.47005 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47224 * 299.99438 * 22 20 18 26 26 C 1.46849 * 110.99768 * 59.74633 * 12 2 1 27 27 H 1.09000 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47258 * 299.99799 * 1 2 3 29 29 H 1.08994 * 109.47842 * 59.99830 * 1 2 3 30 30 H 0.96695 * 117.00174 * 180.02562 * 9 7 6 31 31 H 1.08000 * 126.52943 * 179.97438 * 10 6 5 32 32 H 1.08995 * 109.46659 * 54.14295 * 13 12 2 33 33 H 1.09009 * 109.46400 * 294.17124 * 13 12 2 34 34 H 1.09002 * 109.50563 * 179.11883 * 14 13 12 35 35 H 1.09003 * 109.50107 * 299.19864 * 14 13 12 36 36 H 1.09000 * 109.52057 * 62.27355 * 15 14 13 37 37 H 1.08995 * 109.52240 * 182.46183 * 15 14 13 38 38 H 0.97003 * 120.00089 * 180.02562 * 21 20 18 39 39 H 1.09001 * 109.46071 * 305.85100 * 26 12 2 40 40 H 1.09002 * 109.46350 * 65.83217 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.5416 -0.1330 2.2769 6 6 2.8787 -1.0949 3.1789 7 6 3.4865 -0.8787 4.5029 8 8 3.7401 -1.8284 5.2175 9 8 3.7606 0.3724 4.9224 10 6 2.5471 -2.2948 2.6270 11 8 2.0189 -2.0375 1.4201 12 7 2.0196 -0.6925 -1.1995 13 6 3.4844 -0.7946 -1.1871 14 6 3.9479 -1.6448 -2.3722 15 6 3.4737 -0.9973 -3.6762 16 6 1.9492 -0.8576 -3.6425 17 1 1.4945 -1.8463 -3.5797 18 6 1.4795 -0.1665 -4.8966 19 1 0.9449 0.7695 -4.8294 20 6 1.7320 -0.7292 -6.1297 21 7 2.3833 -1.8688 -6.2115 22 14 1.1492 0.1271 -7.6842 23 1 1.7700 1.4734 -7.7702 24 1 1.5436 -0.6760 -8.8694 25 1 -0.3290 0.2650 -7.6488 26 6 1.5437 -0.0301 -2.4207 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 4.1596 0.4642 5.7984 31 1 2.6807 -3.2679 3.0760 32 1 3.8081 -1.2611 -0.2567 33 1 3.9186 0.2024 -1.2636 34 1 5.0361 -1.7074 -2.3716 35 1 3.5258 -2.6463 -2.2887 36 1 3.9271 -0.0114 -3.7792 37 1 3.7642 -1.6228 -4.5202 38 1 2.5613 -2.2646 -7.0791 39 1 0.4579 0.0585 -2.3862 40 1 1.9871 0.9631 -2.4914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593725760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:55 Heat of formation + Delta-G solvation = -90.589588 kcal Electronic energy + Delta-G solvation = -23890.290312 eV Core-core repulsion = 20284.635608 eV Total energy + Delta-G solvation = -3605.654704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.65682 -41.07900 -40.08516 -37.22365 -36.41890 -35.94162 -34.32906 -31.99062 -31.58998 -30.20781 -27.06320 -26.28834 -25.70139 -23.94770 -22.95699 -22.77311 -21.23349 -20.39060 -19.47478 -18.77116 -18.27153 -18.07111 -17.43595 -16.96621 -16.59049 -16.41771 -16.12569 -15.52864 -15.05766 -14.83743 -14.53989 -14.42208 -14.35311 -14.11636 -13.71165 -13.20445 -12.82383 -12.81424 -12.65425 -12.62812 -12.54941 -12.43142 -12.40763 -12.14332 -11.94742 -11.86830 -11.71088 -11.36064 -10.90371 -10.64415 -10.35076 -10.21280 -9.31226 -8.04240 -6.17629 -0.17181 0.65727 1.44635 1.46114 1.46458 1.53807 1.81689 1.86959 2.43172 2.56323 3.06355 3.23765 3.59483 3.92700 4.00001 4.06355 4.17289 4.23857 4.36731 4.42000 4.51658 4.58166 4.65133 4.73539 4.80847 4.86143 4.88138 5.00119 5.05606 5.13065 5.30394 5.36113 5.38467 5.51991 5.67499 5.91316 6.07624 6.11438 6.20683 6.37667 6.46058 6.88285 6.95123 7.50361 9.00353 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036502 B = 0.003284 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.902452 B = 8523.859636 C = 8805.492809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.172 3.828 3 H 0.088 0.912 4 C 0.219 3.781 5 N -0.465 5.465 6 C -0.095 4.095 7 C 0.585 3.415 8 O -0.529 6.529 9 O -0.496 6.496 10 C 0.049 3.951 11 O -0.180 6.180 12 N -0.537 5.537 13 C 0.070 3.930 14 C -0.107 4.107 15 C -0.105 4.105 16 C 0.054 3.946 17 H 0.001 0.999 18 C -0.533 4.533 19 H 0.057 0.943 20 C 0.015 3.985 21 N -0.916 5.916 22 Si 0.952 3.048 23 H -0.272 1.272 24 H -0.288 1.288 25 H -0.270 1.270 26 C 0.079 3.921 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.437 0.563 31 H 0.269 0.731 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.024 0.976 37 H 0.058 0.942 38 H 0.259 0.741 39 H 0.080 0.920 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 2.167 18.895 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.062 3.938 3 H 0.106 0.894 4 C 0.009 3.991 5 N -0.194 5.194 6 C -0.213 4.213 7 C 0.429 3.571 8 O -0.420 6.420 9 O -0.309 6.309 10 C -0.026 4.026 11 O -0.064 6.064 12 N -0.264 5.264 13 C -0.058 4.058 14 C -0.145 4.145 15 C -0.143 4.143 16 C 0.036 3.964 17 H 0.019 0.981 18 C -0.572 4.572 19 H 0.075 0.925 20 C -0.184 4.184 21 N -0.555 5.555 22 Si 0.778 3.222 23 H -0.198 1.198 24 H -0.214 1.214 25 H -0.195 1.195 26 C -0.047 4.047 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.299 0.701 31 H 0.285 0.715 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.179 1.950 18.653 18.756 hybrid contribution 0.504 0.334 -0.542 0.812 sum 0.683 2.284 18.111 18.267 Atomic orbital electron populations 1.21925 0.90256 1.03837 1.03945 1.20207 0.97661 0.93954 0.81957 0.89445 1.26263 0.98210 0.77538 0.97056 1.70853 1.14635 1.32819 1.01140 1.20781 1.12899 0.90905 0.96716 1.18919 0.73634 0.80965 0.83559 1.90940 1.51802 1.43521 1.55716 1.84634 1.74992 1.29022 1.42286 1.26125 0.92774 1.01602 0.82110 1.84580 1.61095 1.27972 1.32722 1.62055 1.10551 1.52322 1.01429 1.21973 0.87108 0.98515 0.98230 1.21548 0.99527 0.98874 0.94545 1.21487 0.98241 0.98172 0.96398 1.18573 0.92519 0.94370 0.90983 0.98107 1.21497 1.36106 1.07584 0.92022 0.92513 1.25687 0.95303 0.95492 1.01931 1.70026 1.41531 1.19025 1.24951 0.85715 0.78954 0.78529 0.79049 1.19770 1.21396 1.19534 1.22147 0.99901 0.94848 0.87846 0.91415 0.89962 0.89890 0.70061 0.71526 0.91823 0.94999 0.91512 0.92911 0.95677 0.92303 0.93182 0.90203 0.95683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.95 71.98 0.64 -2.64 16 2 C 0.17 4.70 2.62 44.16 0.12 4.82 16 3 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 4 C 0.22 5.96 5.39 88.39 0.48 6.44 16 5 N -0.46 -12.88 11.36 -293.09 -3.33 -16.21 16 6 C -0.10 -2.30 7.04 40.38 0.28 -2.01 16 7 C 0.59 12.78 8.33 70.20 0.58 13.36 16 8 O -0.53 -12.68 17.68 19.73 0.35 -12.33 16 9 O -0.50 -8.65 13.44 -56.86 -0.76 -9.42 16 10 C 0.05 0.98 11.95 67.34 0.80 1.78 16 11 O -0.18 -4.59 10.55 0.64 0.01 -4.58 16 12 N -0.54 -18.04 4.52 -875.49 -3.96 -21.99 16 13 C 0.07 2.33 5.23 86.33 0.45 2.78 16 14 C -0.11 -4.05 6.09 30.65 0.19 -3.87 16 15 C -0.10 -4.87 5.03 30.68 0.15 -4.72 16 16 C 0.05 2.63 2.26 -11.49 -0.03 2.60 16 17 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 18 C -0.53 -28.31 8.56 25.60 0.22 -28.09 16 19 H 0.06 2.90 7.74 -2.91 -0.02 2.88 16 20 C 0.01 0.79 5.30 84.66 0.45 1.24 16 21 N -0.92 -52.19 11.36 21.45 0.24 -51.94 16 22 Si 0.95 42.63 29.54 68.60 2.03 44.66 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 C 0.08 3.04 4.44 86.32 0.38 3.43 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.08 1.91 6.28 -2.39 -0.01 1.90 16 30 H 0.44 2.65 9.11 -74.06 -0.67 1.98 16 31 H 0.27 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.06 1.98 6.62 -2.39 -0.02 1.97 16 33 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.02 1.15 8.14 -2.39 -0.02 1.14 16 37 H 0.06 3.13 6.16 -2.39 -0.01 3.11 16 38 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 39 H 0.08 2.90 6.00 -2.39 -0.01 2.88 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -66.66 332.51 -0.30 -66.97 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.39 Total: 9.72 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 4.73 Total: -4.87 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -7.04 Total: -90.14 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.41 Total: -26.33 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -66.66 -0.30 -66.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593725760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.623 kcal (2) G-P(sol) polarization free energy of solvation -66.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds