Wall clock time and date at job start Tue Mar 31 2020 07:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47037 * 2 1 4 4 C 1.50698 * 109.47402 * 240.00355 * 2 1 3 5 5 N 1.29919 * 125.37033 * 104.99830 * 4 2 1 6 6 C 1.36106 * 108.47078 * 179.97438 * 5 4 2 7 7 C 1.47277 * 126.45805 * 179.97438 * 6 5 4 8 8 O 1.21535 * 119.99704 * 180.02562 * 7 6 5 9 9 O 1.34770 * 120.00053 * 0.02562 * 7 6 5 10 10 C 1.36170 * 107.08461 * 0.02562 * 6 5 4 11 11 O 1.34058 * 125.36288 * 284.69021 * 4 2 1 12 12 N 1.46901 * 109.46962 * 119.99706 * 2 1 3 13 13 C 1.46851 * 110.99542 * 175.79296 * 12 2 1 14 14 C 1.53044 * 109.51994 * 185.84303 * 13 12 2 15 15 C 1.53123 * 109.27512 * 300.81709 * 14 13 12 16 16 C 1.53118 * 109.15778 * 57.65945 * 15 14 13 17 17 H 1.09001 * 109.54037 * 62.30404 * 16 15 14 18 18 C 1.50706 * 109.50268 * 182.40341 * 16 15 14 19 19 H 1.07995 * 120.00167 * 119.52258 * 18 16 15 20 20 C 1.37879 * 119.99394 * 299.79957 * 18 16 15 21 21 N 1.31514 * 120.00338 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99424 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47474 * 90.00322 * 22 20 18 24 24 H 1.48507 * 109.46754 * 210.00056 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99887 * 22 20 18 26 26 C 1.46842 * 111.00029 * 300.00201 * 12 2 1 27 27 H 1.08997 * 109.46690 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47203 * 300.00135 * 1 2 3 29 29 H 1.09002 * 109.46568 * 60.00068 * 1 2 3 30 30 H 0.96697 * 116.99811 * 179.97438 * 9 7 6 31 31 H 1.07999 * 126.53706 * 180.02562 * 10 6 5 32 32 H 1.09001 * 109.46322 * 305.85548 * 13 12 2 33 33 H 1.08999 * 109.46740 * 65.82656 * 13 12 2 34 34 H 1.09001 * 109.50153 * 60.76039 * 14 13 12 35 35 H 1.09000 * 109.50059 * 180.87918 * 14 13 12 36 36 H 1.08990 * 109.52665 * 297.75102 * 15 14 13 37 37 H 1.08997 * 109.51718 * 177.55885 * 15 14 13 38 38 H 0.96996 * 119.99730 * 179.97438 * 21 20 18 39 39 H 1.08993 * 109.46277 * 54.14433 * 26 12 2 40 40 H 1.09000 * 109.46334 * 294.17171 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 2.5416 -0.1328 -2.2770 6 6 2.8798 -1.0948 -3.1786 7 6 3.4879 -0.8785 -4.5024 8 8 3.7424 -1.8283 -5.2166 9 8 3.7621 0.3726 -4.9217 10 6 2.5488 -2.2947 -2.6264 11 8 2.0297 -2.0381 -1.4153 12 7 2.0197 -0.6924 1.1995 13 6 3.4842 -0.7997 1.1841 14 6 3.9471 -1.6500 2.3695 15 6 3.4780 -0.9978 3.6731 16 6 1.9540 -0.8537 3.6428 17 1 1.4955 -1.8408 3.5825 18 6 1.4893 -0.1590 4.8969 19 1 0.9620 0.7811 4.8297 20 6 1.7425 -0.7209 6.1303 21 7 2.3899 -1.8627 6.2124 22 14 1.1659 0.1398 7.6847 23 1 -0.2013 -0.3255 8.0302 24 1 2.0936 -0.1785 8.7998 25 1 1.1473 1.6076 7.4600 26 6 1.5488 -0.0266 2.4206 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 4.1614 0.4643 -5.7976 31 1 2.6832 -3.2678 -3.0750 32 1 3.8042 -1.2688 0.2538 33 1 3.9221 0.1957 1.2582 34 1 3.5206 -2.6498 2.2886 35 1 5.0350 -1.7164 2.3667 36 1 3.9351 -0.0135 3.7730 37 1 3.7681 -1.6227 4.5178 38 1 2.5683 -2.2577 7.0801 39 1 0.4633 0.0659 2.3883 40 1 1.9958 0.9652 2.4889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593725761.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:58 Heat of formation + Delta-G solvation = -67.132382 kcal Electronic energy + Delta-G solvation = -23891.197201 eV Core-core repulsion = 20286.559678 eV Total energy + Delta-G solvation = -3604.637523 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.65060 -40.21355 -38.62976 -36.39429 -35.13653 -34.64020 -32.58780 -30.69957 -29.93121 -29.02553 -25.49504 -25.14297 -24.36229 -22.55410 -21.77716 -21.35125 -20.11319 -18.75630 -18.53349 -17.76949 -17.08552 -16.53807 -16.37582 -15.73616 -15.40619 -15.13694 -14.45496 -14.14694 -13.91198 -13.59564 -13.41819 -12.98007 -12.74760 -12.59407 -12.17048 -11.97097 -11.86420 -11.51117 -11.43861 -11.28040 -11.20476 -10.97853 -10.92778 -10.74133 -10.70931 -10.18839 -9.89591 -9.53143 -9.30106 -9.09866 -8.75389 -8.34977 -7.91371 -6.01016 -4.07509 0.72657 1.68372 2.35723 2.67340 2.80596 3.29066 3.36245 3.38500 3.60106 4.24129 4.43294 4.49493 4.85628 5.10173 5.14653 5.29349 5.33854 5.40332 5.48539 5.68486 5.70870 5.79897 5.92850 5.96456 6.08174 6.14338 6.19454 6.29675 6.42219 6.62295 6.67904 6.86133 7.12880 7.20201 7.34508 7.46652 7.58936 7.64856 7.72691 8.02033 8.12168 8.42090 8.96358 9.57209 11.05027 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036493 B = 0.003285 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.088050 B = 8521.243645 C = 8803.319014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.170 3.830 3 H 0.083 0.917 4 C 0.232 3.768 5 N -0.453 5.453 6 C -0.070 4.070 7 C 0.579 3.421 8 O -0.514 6.514 9 O -0.494 6.494 10 C 0.027 3.973 11 O -0.168 6.168 12 N -0.531 5.531 13 C 0.062 3.938 14 C -0.115 4.115 15 C -0.112 4.112 16 C 0.056 3.944 17 H 0.037 0.963 18 C -0.516 4.516 19 H 0.055 0.945 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.890 3.110 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.065 3.935 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.414 0.586 31 H 0.233 0.767 32 H 0.050 0.950 33 H 0.029 0.971 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.031 0.969 37 H 0.092 0.908 38 H 0.260 0.740 39 H 0.070 0.930 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.516 1.491 -17.466 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.060 3.940 3 H 0.101 0.899 4 C 0.022 3.978 5 N -0.182 5.182 6 C -0.188 4.188 7 C 0.422 3.578 8 O -0.403 6.403 9 O -0.304 6.304 10 C -0.048 4.048 11 O -0.052 6.052 12 N -0.257 5.257 13 C -0.065 4.065 14 C -0.153 4.153 15 C -0.150 4.150 16 C 0.038 3.962 17 H 0.055 0.945 18 C -0.555 4.555 19 H 0.073 0.927 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.061 4.061 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.273 0.727 31 H 0.249 0.751 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.359 1.259 -17.188 17.237 hybrid contribution 0.428 0.542 0.182 0.714 sum 0.786 1.801 -17.006 17.119 Atomic orbital electron populations 1.21941 0.91691 1.03844 1.02977 1.20191 0.96561 0.94063 0.83214 0.89931 1.26456 0.97199 0.77157 0.97035 1.70906 1.14493 1.31971 1.00826 1.20467 1.11690 0.90577 0.96105 1.19093 0.74015 0.80644 0.84009 1.90946 1.50953 1.43000 1.55404 1.84682 1.75106 1.30158 1.40468 1.25383 0.95523 1.00609 0.83328 1.84583 1.61132 1.28199 1.31288 1.62183 1.10740 1.51659 1.01123 1.22075 0.86944 0.98774 0.98756 1.21664 0.98428 0.99489 0.95710 1.21677 0.98749 0.99012 0.95534 1.18667 0.92231 0.95762 0.89570 0.94536 1.21118 1.36535 1.07110 0.90719 0.92723 1.24928 0.95041 0.94887 0.98923 1.69886 1.40572 1.17724 1.24411 0.86624 0.78555 0.79921 0.83045 1.20694 1.21309 1.19990 1.22472 0.99359 0.95831 0.88434 0.90936 0.89916 0.91916 0.72718 0.75125 0.93191 0.95226 0.91920 0.93371 0.95001 0.88956 0.93011 0.91144 0.95659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.95 37.16 0.33 -1.49 16 2 C 0.17 2.46 2.62 -68.86 -0.18 2.28 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.23 3.36 5.39 -13.09 -0.07 3.29 16 5 N -0.45 -6.70 11.36 -7.67 -0.09 -6.78 16 6 C -0.07 -0.92 7.04 -83.04 -0.58 -1.50 16 7 C 0.58 6.91 8.33 34.40 0.29 7.19 16 8 O -0.51 -6.69 17.68 -19.29 -0.34 -7.03 16 9 O -0.49 -4.83 13.44 -40.68 -0.55 -5.38 16 10 C 0.03 0.31 11.95 29.99 0.36 0.67 16 11 O -0.17 -2.31 10.51 6.54 0.07 -2.24 16 12 N -0.53 -9.16 4.52 -228.07 -1.03 -10.19 16 13 C 0.06 1.08 5.23 -3.83 -0.02 1.06 16 14 C -0.12 -2.19 6.09 -26.64 -0.16 -2.35 16 15 C -0.11 -2.54 5.03 -26.61 -0.13 -2.67 16 16 C 0.06 1.34 2.26 -91.69 -0.21 1.13 16 17 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 18 C -0.52 -13.52 8.56 -34.44 -0.29 -13.81 16 19 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 20 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 21 N -0.89 -24.62 11.36 55.43 0.63 -23.99 16 22 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.06 1.26 4.44 -3.83 -0.02 1.25 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.02 6.28 -51.93 -0.33 0.69 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.41 1.73 9.11 45.56 0.42 2.14 16 31 H 0.23 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.05 0.83 6.58 -51.93 -0.34 0.48 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 2.37 6.16 -51.93 -0.32 2.05 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.07 1.30 6.01 -51.93 -0.31 0.99 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -30.87 332.45 -6.76 -37.62 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.65 Total: 0.69 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.79 Total: -3.36 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -0.49 Total: -40.96 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.82 Total: -14.65 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.87 -6.76 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593725761.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.508 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds