Wall clock time and date at job start Tue Mar 31 2020 07:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47037 * 2 1 4 4 C 1.50698 * 109.47402 * 240.00355 * 2 1 3 5 5 N 1.29919 * 125.37033 * 104.99830 * 4 2 1 6 6 C 1.36106 * 108.47078 * 179.97438 * 5 4 2 7 7 C 1.47277 * 126.45805 * 179.97438 * 6 5 4 8 8 O 1.21535 * 119.99704 * 180.02562 * 7 6 5 9 9 O 1.34770 * 120.00053 * 0.02562 * 7 6 5 10 10 C 1.36170 * 107.08461 * 0.02562 * 6 5 4 11 11 O 1.34058 * 125.36288 * 284.69021 * 4 2 1 12 12 N 1.46901 * 109.46962 * 119.99706 * 2 1 3 13 13 C 1.46851 * 110.99542 * 175.79296 * 12 2 1 14 14 C 1.53044 * 109.51994 * 185.84303 * 13 12 2 15 15 C 1.53123 * 109.27512 * 300.81709 * 14 13 12 16 16 C 1.53118 * 109.15778 * 57.65945 * 15 14 13 17 17 H 1.09001 * 109.54037 * 62.30404 * 16 15 14 18 18 C 1.50706 * 109.50268 * 182.40341 * 16 15 14 19 19 H 1.07995 * 120.00167 * 119.52258 * 18 16 15 20 20 C 1.37879 * 119.99394 * 299.79957 * 18 16 15 21 21 N 1.31514 * 120.00338 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99424 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47474 * 90.00322 * 22 20 18 24 24 H 1.48507 * 109.46754 * 210.00056 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99887 * 22 20 18 26 26 C 1.46842 * 111.00029 * 300.00201 * 12 2 1 27 27 H 1.08997 * 109.46690 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47203 * 300.00135 * 1 2 3 29 29 H 1.09002 * 109.46568 * 60.00068 * 1 2 3 30 30 H 0.96697 * 116.99811 * 179.97438 * 9 7 6 31 31 H 1.07999 * 126.53706 * 180.02562 * 10 6 5 32 32 H 1.09001 * 109.46322 * 305.85548 * 13 12 2 33 33 H 1.08999 * 109.46740 * 65.82656 * 13 12 2 34 34 H 1.09001 * 109.50153 * 60.76039 * 14 13 12 35 35 H 1.09000 * 109.50059 * 180.87918 * 14 13 12 36 36 H 1.08990 * 109.52665 * 297.75102 * 15 14 13 37 37 H 1.08997 * 109.51718 * 177.55885 * 15 14 13 38 38 H 0.96996 * 119.99730 * 179.97438 * 21 20 18 39 39 H 1.08993 * 109.46277 * 54.14433 * 26 12 2 40 40 H 1.09000 * 109.46334 * 294.17171 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 2.5416 -0.1328 -2.2770 6 6 2.8798 -1.0948 -3.1786 7 6 3.4879 -0.8785 -4.5024 8 8 3.7424 -1.8283 -5.2166 9 8 3.7621 0.3726 -4.9217 10 6 2.5488 -2.2947 -2.6264 11 8 2.0297 -2.0381 -1.4153 12 7 2.0197 -0.6924 1.1995 13 6 3.4842 -0.7997 1.1841 14 6 3.9471 -1.6500 2.3695 15 6 3.4780 -0.9978 3.6731 16 6 1.9540 -0.8537 3.6428 17 1 1.4955 -1.8408 3.5825 18 6 1.4893 -0.1590 4.8969 19 1 0.9620 0.7811 4.8297 20 6 1.7425 -0.7209 6.1303 21 7 2.3899 -1.8627 6.2124 22 14 1.1659 0.1398 7.6847 23 1 -0.2013 -0.3255 8.0302 24 1 2.0936 -0.1785 8.7998 25 1 1.1473 1.6076 7.4600 26 6 1.5488 -0.0266 2.4206 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 4.1614 0.4643 -5.7976 31 1 2.6832 -3.2678 -3.0750 32 1 3.8042 -1.2688 0.2538 33 1 3.9221 0.1957 1.2582 34 1 3.5206 -2.6498 2.2886 35 1 5.0350 -1.7164 2.3667 36 1 3.9351 -0.0135 3.7730 37 1 3.7681 -1.6227 4.5178 38 1 2.5683 -2.2577 7.0801 39 1 0.4633 0.0659 2.3883 40 1 1.9958 0.9652 2.4889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593725761.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:58 Heat of formation + Delta-G solvation = -90.644929 kcal Electronic energy + Delta-G solvation = -23892.216782 eV Core-core repulsion = 20286.559678 eV Total energy + Delta-G solvation = -3605.657104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.65638 -41.07923 -40.08580 -37.22392 -36.41925 -35.94225 -34.32841 -31.99169 -31.58791 -30.21008 -27.06490 -26.28792 -25.69872 -23.94885 -22.95820 -22.77226 -21.23408 -20.39356 -19.47432 -18.77172 -18.27368 -18.07313 -17.43675 -16.96721 -16.58840 -16.41846 -16.12280 -15.52516 -15.05939 -14.83752 -14.54280 -14.42259 -14.35388 -14.11691 -13.71365 -13.20269 -12.85587 -12.81388 -12.65442 -12.62955 -12.50826 -12.43737 -12.40977 -12.14319 -11.94802 -11.86656 -11.71279 -11.36616 -10.90046 -10.63781 -10.35640 -10.21348 -9.31289 -8.04437 -6.17683 -0.17213 0.65697 1.44608 1.44810 1.46168 1.55243 1.81525 1.87133 2.43059 2.56257 3.06276 3.23701 3.59490 3.92659 4.00157 4.06212 4.17316 4.23862 4.36670 4.41980 4.51648 4.58104 4.65153 4.73627 4.80951 4.86134 4.88145 5.00079 5.05567 5.13110 5.30488 5.36083 5.38452 5.52000 5.67632 5.91284 6.07549 6.11366 6.20660 6.37666 6.46060 6.88269 6.95214 7.50348 9.00348 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036493 B = 0.003285 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.088050 B = 8521.243645 C = 8803.319014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.171 3.829 3 H 0.088 0.912 4 C 0.219 3.781 5 N -0.465 5.465 6 C -0.095 4.095 7 C 0.585 3.415 8 O -0.529 6.529 9 O -0.496 6.496 10 C 0.049 3.951 11 O -0.180 6.180 12 N -0.537 5.537 13 C 0.069 3.931 14 C -0.107 4.107 15 C -0.105 4.105 16 C 0.054 3.946 17 H 0.001 0.999 18 C -0.532 4.532 19 H 0.057 0.943 20 C 0.014 3.986 21 N -0.916 5.916 22 Si 0.952 3.048 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.267 1.267 26 C 0.079 3.921 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.437 0.563 31 H 0.269 0.731 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.025 0.975 37 H 0.058 0.942 38 H 0.259 0.741 39 H 0.080 0.920 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 2.149 -18.918 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.062 3.938 3 H 0.105 0.895 4 C 0.009 3.991 5 N -0.194 5.194 6 C -0.213 4.213 7 C 0.429 3.571 8 O -0.420 6.420 9 O -0.309 6.309 10 C -0.026 4.026 11 O -0.064 6.064 12 N -0.263 5.263 13 C -0.058 4.058 14 C -0.145 4.145 15 C -0.143 4.143 16 C 0.035 3.965 17 H 0.019 0.981 18 C -0.571 4.571 19 H 0.075 0.925 20 C -0.184 4.184 21 N -0.555 5.555 22 Si 0.778 3.222 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.192 1.192 26 C -0.047 4.047 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.299 0.701 31 H 0.285 0.715 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.168 1.938 -18.675 18.776 hybrid contribution 0.511 0.323 0.548 0.816 sum 0.679 2.261 -18.127 18.280 Atomic orbital electron populations 1.21923 0.90239 1.03839 1.03942 1.20211 0.97682 0.93953 0.81944 0.89464 1.26263 0.98213 0.77514 0.97079 1.70851 1.14511 1.32841 1.01242 1.20780 1.12885 0.90920 0.96708 1.18920 0.73649 0.80966 0.83544 1.90941 1.51798 1.43517 1.55724 1.84634 1.74981 1.29022 1.42294 1.26127 0.92905 1.01609 0.81969 1.84588 1.61472 1.27910 1.32403 1.62056 1.10687 1.52184 1.01422 1.21976 0.87116 0.98508 0.98235 1.21549 0.99533 0.98864 0.94542 1.21484 0.98251 0.98171 0.96404 1.18580 0.92521 0.94386 0.90989 0.98078 1.21523 1.36299 1.07253 0.91990 0.92524 1.25689 0.95282 0.95542 1.01933 1.70033 1.41627 1.19009 1.24867 0.85656 0.78019 0.79169 0.79381 1.20243 1.21356 1.19188 1.22145 0.99932 0.94810 0.87854 0.91408 0.89901 0.89953 0.70060 0.71527 0.91831 0.95012 0.92900 0.91513 0.95656 0.92307 0.93197 0.90197 0.95705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.95 71.98 0.64 -2.64 16 2 C 0.17 4.70 2.62 44.17 0.12 4.82 16 3 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 4 C 0.22 5.96 5.39 88.39 0.48 6.44 16 5 N -0.46 -12.87 11.36 -293.09 -3.33 -16.20 16 6 C -0.10 -2.29 7.04 40.38 0.28 -2.01 16 7 C 0.59 12.77 8.33 70.20 0.58 13.36 16 8 O -0.53 -12.68 17.68 19.72 0.35 -12.33 16 9 O -0.50 -8.65 13.44 -56.81 -0.76 -9.41 16 10 C 0.05 0.98 11.95 67.34 0.80 1.78 16 11 O -0.18 -4.59 10.51 0.47 0.00 -4.58 16 12 N -0.54 -18.03 4.52 -875.49 -3.96 -21.99 16 13 C 0.07 2.32 5.23 86.33 0.45 2.78 16 14 C -0.11 -4.05 6.09 30.65 0.19 -3.86 16 15 C -0.10 -4.87 5.03 30.67 0.15 -4.72 16 16 C 0.05 2.61 2.26 -11.48 -0.03 2.59 16 17 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 18 C -0.53 -28.22 8.56 25.60 0.22 -28.00 16 19 H 0.06 2.91 7.74 -2.91 -0.02 2.88 16 20 C 0.01 0.77 5.31 84.66 0.45 1.22 16 21 N -0.92 -52.15 11.36 21.45 0.24 -51.90 16 22 Si 0.95 42.65 29.54 68.60 2.03 44.68 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C 0.08 3.04 4.44 86.33 0.38 3.43 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.91 6.28 -2.39 -0.02 1.89 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.44 2.65 9.11 -74.06 -0.67 1.98 16 31 H 0.27 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.06 1.98 6.58 -2.39 -0.02 1.97 16 33 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 3.13 6.16 -2.39 -0.01 3.11 16 38 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 39 H 0.08 2.90 6.01 -2.39 -0.01 2.88 16 40 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -66.68 332.45 -0.30 -66.98 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.39 Total: 9.58 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 4.73 Total: -4.82 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -7.04 Total: -90.10 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.41 Total: -26.33 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -66.68 -0.30 -66.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593725761.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.666 kcal (2) G-P(sol) polarization free energy of solvation -66.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds