Wall clock time and date at job start Tue Mar 31 2020 06:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47300 * 2 1 4 4 H 1.09004 * 109.47340 * 306.06099 * 3 2 1 5 5 C 1.50694 * 109.47561 * 186.05991 * 3 2 1 6 6 H 1.08004 * 120.00203 * 243.94910 * 5 3 2 7 7 C 1.37874 * 120.00222 * 63.93958 * 5 3 2 8 8 N 1.31515 * 120.00383 * 196.93857 * 7 5 3 9 9 Si 1.86800 * 119.99691 * 16.94108 * 7 5 3 10 10 H 1.48501 * 109.47023 * 86.30949 * 9 7 5 11 11 H 1.48498 * 109.47168 * 206.30665 * 9 7 5 12 12 H 1.48495 * 109.47247 * 326.30948 * 9 7 5 13 13 N 1.46899 * 109.46776 * 66.05642 * 3 2 1 14 14 C 1.46894 * 111.00585 * 250.67690 * 13 3 2 15 15 C 1.50699 * 109.47711 * 183.04819 * 14 13 3 16 16 O 1.21328 * 119.99562 * 0.02562 * 15 14 13 17 17 C 1.46620 * 120.00328 * 179.97438 * 15 14 13 18 18 C 1.41528 * 126.50857 * 359.69368 * 17 15 14 19 19 C 1.36333 * 106.97436 * 179.83368 * 18 17 15 20 20 C 1.46666 * 125.80841 * 180.13081 * 19 18 17 21 21 O 1.21603 * 120.00411 * 0.32235 * 20 19 18 22 22 O 1.34866 * 120.00251 * 180.32390 * 20 19 18 23 23 N 1.37887 * 108.37922 * 0.42774 * 19 18 17 24 24 H 0.96993 * 125.34774 * 179.74962 * 23 19 18 25 25 C 1.34081 * 109.29623 * 359.72471 * 23 19 18 26 26 C 1.50705 * 125.81873 * 180.02562 * 25 23 19 27 27 H 1.09003 * 109.47072 * 55.97137 * 1 2 3 28 28 H 1.08998 * 109.46726 * 295.97027 * 1 2 3 29 29 H 1.09003 * 109.46721 * 175.96645 * 1 2 3 30 30 H 1.08998 * 109.47135 * 120.00612 * 2 1 3 31 31 H 1.09003 * 109.46802 * 240.00484 * 2 1 3 32 32 H 0.96998 * 120.00045 * 180.02562 * 8 7 5 33 33 H 1.00903 * 111.00145 * 126.72307 * 13 3 2 34 34 H 1.09004 * 109.47082 * 303.04948 * 14 13 3 35 35 H 1.09001 * 109.47251 * 63.04642 * 14 13 3 36 36 H 1.08001 * 126.50637 * 359.97438 * 18 17 15 37 37 H 0.96704 * 117.00492 * 180.02562 * 22 20 19 38 38 H 1.08999 * 109.46984 * 270.00255 * 26 25 23 39 39 H 1.09000 * 109.46754 * 29.99577 * 26 25 23 40 40 H 1.08993 * 109.47352 * 150.00128 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5909 1.9867 -0.8308 5 6 3.5395 1.4452 -0.1500 6 1 4.1612 1.8271 0.6463 7 6 4.1179 0.9599 -1.3037 8 7 5.3957 0.6491 -1.3183 9 14 3.0864 0.7441 -2.8460 10 1 3.0535 2.0216 -3.6023 11 1 3.6821 -0.3186 -3.6952 12 1 1.7037 0.3576 -2.4668 13 7 1.6733 2.0914 1.2658 14 6 0.6273 3.1012 1.0562 15 6 0.3311 3.7960 2.3602 16 8 0.9328 3.4812 3.3656 17 6 -0.6834 4.8532 2.4137 18 6 -1.4580 5.3325 1.3305 19 6 -2.2728 6.3076 1.8245 20 6 -3.2512 7.0809 1.0526 21 8 -3.3918 6.8693 -0.1366 22 8 -3.9950 8.0268 1.6617 23 7 -2.0156 6.4476 3.1719 24 1 -2.4558 7.0766 3.7648 25 6 -1.0620 5.5774 3.5338 26 6 -0.4979 5.4138 4.9217 27 1 -0.3633 0.5751 -0.8517 28 1 -0.3633 0.4500 0.9239 29 1 -0.3633 -1.0252 -0.0723 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 5.8026 0.3081 -2.1301 33 1 2.4825 2.4964 1.7123 34 1 0.9700 3.8328 0.3243 35 1 -0.2773 2.6164 0.6891 36 1 -1.4138 4.9891 0.3075 37 1 -4.6268 8.5102 1.1118 38 1 0.3584 6.0766 5.0463 39 1 -1.2624 5.6660 5.6566 40 1 -0.1818 4.3808 5.0660 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:29 Heat of formation + Delta-G solvation = -87.817550 kcal Electronic energy + Delta-G solvation = -23250.140723 eV Core-core repulsion = 19644.606224 eV Total energy + Delta-G solvation = -3605.534499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.94955 -40.03959 -38.64217 -36.47754 -36.11355 -32.59318 -32.09439 -31.82500 -31.24269 -28.25661 -27.52187 -25.52382 -23.76048 -22.46382 -21.56815 -20.73128 -19.66595 -19.36911 -18.20233 -17.86759 -16.89492 -16.22819 -15.65658 -15.54093 -15.16938 -14.87392 -14.49678 -14.20223 -13.83304 -13.77701 -13.57669 -13.09116 -12.95071 -12.84802 -12.74607 -12.43239 -12.07364 -12.02501 -11.98146 -11.58933 -11.30311 -11.16742 -10.78390 -10.72187 -10.40390 -9.80673 -9.48553 -9.43286 -9.17742 -9.13622 -8.57417 -8.37551 -7.39755 -6.11435 -4.06185 0.87246 1.40551 2.41850 2.64099 2.75228 3.25656 3.30331 3.39622 3.42824 4.23508 4.42969 4.46291 4.65186 4.87316 5.07932 5.17154 5.28452 5.33211 5.40053 5.51873 5.76795 5.89607 5.91184 5.99372 6.02445 6.14186 6.15624 6.23835 6.34153 6.44367 6.70248 6.83594 6.88470 7.09674 7.11921 7.47822 7.49959 7.67807 7.90319 8.04118 8.39734 8.62689 8.98510 9.54944 11.01430 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.003693 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.366992 B = 7580.696922 C = 8367.638908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C 0.191 3.809 4 H 0.009 0.991 5 C -0.539 4.539 6 H 0.076 0.924 7 C 0.079 3.921 8 N -0.888 5.888 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.249 1.249 13 N -0.669 5.669 14 C 0.019 3.981 15 C 0.424 3.576 16 O -0.449 6.449 17 C -0.260 4.260 18 C -0.038 4.038 19 C -0.061 4.061 20 C 0.555 3.445 21 O -0.503 6.503 22 O -0.523 6.523 23 N -0.519 5.519 24 H 0.425 0.575 25 C 0.141 3.859 26 C -0.102 4.102 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.264 0.736 33 H 0.347 0.653 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.163 0.837 37 H 0.418 0.582 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.833 14.064 9.327 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C 0.083 3.917 4 H 0.026 0.974 5 C -0.577 4.577 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.689 3.311 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.173 1.173 13 N -0.302 5.302 14 C -0.112 4.112 15 C 0.301 3.699 16 O -0.324 6.324 17 C -0.267 4.267 18 C -0.064 4.064 19 C -0.168 4.168 20 C 0.399 3.601 21 O -0.390 6.390 22 O -0.336 6.336 23 N -0.115 5.115 24 H 0.264 0.736 25 C 0.017 3.983 26 C -0.159 4.159 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.166 0.834 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.181 0.819 37 H 0.277 0.723 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.673 13.180 9.858 24.891 hybrid contribution -0.682 1.339 -1.693 2.264 sum -19.355 14.519 8.164 25.536 Atomic orbital electron populations 1.21828 0.98611 0.99444 1.00572 1.21861 0.92727 0.99242 1.00895 1.19481 0.95350 0.90977 0.85926 0.97363 1.21329 0.89639 1.43131 1.03589 0.90635 1.24901 0.94767 0.93888 0.98859 1.70004 1.12156 1.42213 1.28133 0.87237 0.82328 0.77993 0.83577 1.20623 1.21439 1.17342 1.60483 1.13775 1.29903 1.26040 1.22273 0.99136 0.95279 0.94491 1.21681 0.78616 0.79091 0.90513 1.90480 1.45302 1.59798 1.36843 1.20284 1.07332 1.06178 0.92931 1.21407 0.92328 0.92912 0.99708 1.18755 1.06851 1.07290 0.83877 1.19489 0.78387 0.77110 0.85066 1.90993 1.66361 1.66283 1.15401 1.84544 1.52187 1.49520 1.47395 1.41686 1.30768 1.30406 1.08648 0.73646 1.21291 0.89771 0.90023 0.97224 1.20738 1.00712 1.06485 0.87998 0.94413 0.92713 0.94693 0.92268 0.93058 0.92646 0.83361 0.92407 0.88519 0.81924 0.72277 0.89467 0.91212 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.14 37.16 0.34 -2.39 16 2 C -0.11 -2.43 4.91 -26.73 -0.13 -2.56 16 3 C 0.19 4.48 1.74 -68.87 -0.12 4.36 16 4 H 0.01 0.20 6.28 -51.93 -0.33 -0.12 16 5 C -0.54 -14.97 9.02 -34.44 -0.31 -15.28 16 6 H 0.08 2.28 7.61 -52.48 -0.40 1.88 16 7 C 0.08 2.26 5.30 -17.82 -0.09 2.17 16 8 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 9 Si 0.86 21.06 25.83 -169.99 -4.39 16.67 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.25 -5.73 5.55 56.52 0.31 -5.42 16 13 N -0.67 -13.93 5.70 -109.23 -0.62 -14.55 16 14 C 0.02 0.31 5.15 -4.98 -0.03 0.29 16 15 C 0.42 6.57 7.16 -30.93 -0.22 6.35 16 16 O -0.45 -7.89 14.58 5.52 0.08 -7.81 16 17 C -0.26 -3.30 6.11 -105.11 -0.64 -3.94 16 18 C -0.04 -0.46 10.08 -39.02 -0.39 -0.85 16 19 C -0.06 -0.63 7.02 -82.43 -0.58 -1.21 16 20 C 0.55 5.56 8.31 34.13 0.28 5.84 16 21 O -0.50 -6.61 17.64 -19.35 -0.34 -6.95 16 22 O -0.52 -3.28 13.44 -40.95 -0.55 -3.83 16 23 N -0.52 -4.27 6.00 -5.57 -0.03 -4.30 16 24 H 0.42 2.16 8.96 -40.82 -0.37 1.79 16 25 C 0.14 1.43 7.21 -81.46 -0.59 0.84 16 26 C -0.10 -0.83 9.88 36.01 0.36 -0.47 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.97 7.15 -51.93 -0.37 0.60 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.05 1.20 4.93 -51.93 -0.26 0.94 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.35 7.65 7.41 -39.29 -0.29 7.36 16 34 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.10 1.52 6.95 -51.93 -0.36 1.16 16 36 H 0.16 1.84 8.05 -52.49 -0.42 1.42 16 37 H 0.42 0.83 9.11 45.56 0.42 1.25 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 1.12 6.47 -51.93 -0.34 0.78 16 LS Contribution 337.96 15.07 5.09 5.09 Total: -1.00 -34.34 337.96 -6.59 -40.93 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.47 Total: 7.80 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.13 Total: -6.87 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.12 Total: -45.03 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.81 Total: -18.59 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.39 Total: 16.67 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.34 -6.59 -40.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.892 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds