Wall clock time and date at job start Tue Mar 31 2020 06:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47300 * 2 1 4 4 H 1.09004 * 109.47340 * 306.06099 * 3 2 1 5 5 C 1.50694 * 109.47561 * 186.05991 * 3 2 1 6 6 H 1.08004 * 120.00203 * 243.94910 * 5 3 2 7 7 C 1.37874 * 120.00222 * 63.93958 * 5 3 2 8 8 N 1.31515 * 120.00383 * 196.93857 * 7 5 3 9 9 Si 1.86800 * 119.99691 * 16.94108 * 7 5 3 10 10 H 1.48501 * 109.47023 * 86.30949 * 9 7 5 11 11 H 1.48498 * 109.47168 * 206.30665 * 9 7 5 12 12 H 1.48495 * 109.47247 * 326.30948 * 9 7 5 13 13 N 1.46899 * 109.46776 * 66.05642 * 3 2 1 14 14 C 1.46894 * 111.00585 * 250.67690 * 13 3 2 15 15 C 1.50699 * 109.47711 * 183.04819 * 14 13 3 16 16 O 1.21328 * 119.99562 * 0.02562 * 15 14 13 17 17 C 1.46620 * 120.00328 * 179.97438 * 15 14 13 18 18 C 1.41528 * 126.50857 * 359.69368 * 17 15 14 19 19 C 1.36333 * 106.97436 * 179.83368 * 18 17 15 20 20 C 1.46666 * 125.80841 * 180.13081 * 19 18 17 21 21 O 1.21603 * 120.00411 * 0.32235 * 20 19 18 22 22 O 1.34866 * 120.00251 * 180.32390 * 20 19 18 23 23 N 1.37887 * 108.37922 * 0.42774 * 19 18 17 24 24 H 0.96993 * 125.34774 * 179.74962 * 23 19 18 25 25 C 1.34081 * 109.29623 * 359.72471 * 23 19 18 26 26 C 1.50705 * 125.81873 * 180.02562 * 25 23 19 27 27 H 1.09003 * 109.47072 * 55.97137 * 1 2 3 28 28 H 1.08998 * 109.46726 * 295.97027 * 1 2 3 29 29 H 1.09003 * 109.46721 * 175.96645 * 1 2 3 30 30 H 1.08998 * 109.47135 * 120.00612 * 2 1 3 31 31 H 1.09003 * 109.46802 * 240.00484 * 2 1 3 32 32 H 0.96998 * 120.00045 * 180.02562 * 8 7 5 33 33 H 1.00903 * 111.00145 * 126.72307 * 13 3 2 34 34 H 1.09004 * 109.47082 * 303.04948 * 14 13 3 35 35 H 1.09001 * 109.47251 * 63.04642 * 14 13 3 36 36 H 1.08001 * 126.50637 * 359.97438 * 18 17 15 37 37 H 0.96704 * 117.00492 * 180.02562 * 22 20 19 38 38 H 1.08999 * 109.46984 * 270.00255 * 26 25 23 39 39 H 1.09000 * 109.46754 * 29.99577 * 26 25 23 40 40 H 1.08993 * 109.47352 * 150.00128 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5909 1.9867 -0.8308 5 6 3.5395 1.4452 -0.1500 6 1 4.1612 1.8271 0.6463 7 6 4.1179 0.9599 -1.3037 8 7 5.3957 0.6491 -1.3183 9 14 3.0864 0.7441 -2.8460 10 1 3.0535 2.0216 -3.6023 11 1 3.6821 -0.3186 -3.6952 12 1 1.7037 0.3576 -2.4668 13 7 1.6733 2.0914 1.2658 14 6 0.6273 3.1012 1.0562 15 6 0.3311 3.7960 2.3602 16 8 0.9328 3.4812 3.3656 17 6 -0.6834 4.8532 2.4137 18 6 -1.4580 5.3325 1.3305 19 6 -2.2728 6.3076 1.8245 20 6 -3.2512 7.0809 1.0526 21 8 -3.3918 6.8693 -0.1366 22 8 -3.9950 8.0268 1.6617 23 7 -2.0156 6.4476 3.1719 24 1 -2.4558 7.0766 3.7648 25 6 -1.0620 5.5774 3.5338 26 6 -0.4979 5.4138 4.9217 27 1 -0.3633 0.5751 -0.8517 28 1 -0.3633 0.4500 0.9239 29 1 -0.3633 -1.0252 -0.0723 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 5.8026 0.3081 -2.1301 33 1 2.4825 2.4964 1.7123 34 1 0.9700 3.8328 0.3243 35 1 -0.2773 2.6164 0.6891 36 1 -1.4138 4.9891 0.3075 37 1 -4.6268 8.5102 1.1118 38 1 0.3584 6.0766 5.0463 39 1 -1.2624 5.6660 5.6566 40 1 -0.1818 4.3808 5.0660 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:28 Heat of formation + Delta-G solvation = -114.418364 kcal Electronic energy + Delta-G solvation = -23251.294221 eV Core-core repulsion = 19644.606224 eV Total energy + Delta-G solvation = -3606.687997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.77091 -40.81915 -39.87379 -37.83459 -37.16117 -34.46469 -33.34617 -32.75380 -32.57108 -29.80773 -28.48016 -27.02213 -24.77713 -24.13282 -22.63781 -21.57104 -21.36886 -20.23895 -19.43697 -18.73565 -18.56881 -17.23611 -16.97356 -16.62762 -16.28602 -16.09175 -15.77904 -15.55863 -15.20244 -14.79911 -14.60491 -14.55154 -14.36056 -14.04238 -13.76826 -13.61498 -13.48221 -13.34312 -12.91254 -12.78219 -12.67179 -12.65085 -12.55965 -12.11711 -11.98757 -11.67060 -11.26235 -11.09589 -10.67049 -10.39327 -10.29187 -9.42304 -9.07897 -8.31974 -6.31505 0.08964 0.38443 1.37011 1.39814 1.50307 1.69354 1.80931 2.10078 2.22578 2.36579 3.00949 3.10002 3.73528 3.75147 3.91369 4.12308 4.32036 4.45067 4.47049 4.54654 4.58258 4.62898 4.68584 4.71024 4.74131 4.90605 4.95379 5.18026 5.25140 5.33949 5.35875 5.44057 5.47715 5.56834 5.61716 5.82598 6.02539 6.25579 6.46132 6.62556 6.77135 6.87639 6.88682 7.33880 8.84623 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.003693 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.366992 B = 7580.696922 C = 8367.638908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.197 3.803 4 H 0.016 0.984 5 C -0.546 4.546 6 H 0.033 0.967 7 C 0.023 3.977 8 N -0.939 5.939 9 Si 0.927 3.073 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.222 1.222 13 N -0.673 5.673 14 C 0.015 3.985 15 C 0.429 3.571 16 O -0.480 6.480 17 C -0.288 4.288 18 C -0.051 4.051 19 C -0.061 4.061 20 C 0.565 3.435 21 O -0.538 6.538 22 O -0.507 6.507 23 N -0.497 5.497 24 H 0.443 0.557 25 C 0.158 3.842 26 C -0.101 4.101 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.335 0.665 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.162 0.838 37 H 0.439 0.561 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.267 15.433 9.432 28.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.088 3.912 4 H 0.033 0.967 5 C -0.584 4.584 6 H 0.051 0.949 7 C -0.176 4.176 8 N -0.578 5.578 9 Si 0.750 3.250 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.145 1.145 13 N -0.304 5.304 14 C -0.115 4.115 15 C 0.309 3.691 16 O -0.357 6.357 17 C -0.295 4.295 18 C -0.076 4.076 19 C -0.169 4.169 20 C 0.410 3.590 21 O -0.429 6.429 22 O -0.322 6.322 23 N -0.094 5.094 24 H 0.285 0.715 25 C 0.031 3.969 26 C -0.158 4.158 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.180 0.820 37 H 0.302 0.698 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.179 14.601 9.986 28.370 hybrid contribution 0.388 1.026 -1.592 1.934 sum -21.791 15.627 8.394 28.098 Atomic orbital electron populations 1.21726 0.95196 1.01191 1.01426 1.21786 0.95749 0.97737 0.99595 1.19367 0.92267 0.92303 0.87256 0.96674 1.21649 0.92020 1.42296 1.02469 0.94909 1.25793 0.95924 0.93599 1.02310 1.70142 1.14389 1.44050 1.29187 0.86184 0.81814 0.78098 0.78861 1.19972 1.21391 1.14481 1.60457 1.13913 1.31468 1.24595 1.22407 0.98307 0.94817 0.95972 1.21618 0.78845 0.79348 0.89303 1.90477 1.46748 1.61077 1.37377 1.19992 1.07954 1.06895 0.94628 1.21466 0.92795 0.93630 0.99673 1.18776 1.06621 1.06894 0.84626 1.19333 0.78159 0.77162 0.84316 1.90987 1.67513 1.67508 1.16909 1.84493 1.52047 1.48467 1.47231 1.41591 1.29782 1.29881 1.08146 0.71458 1.21459 0.89097 0.89061 0.97298 1.20788 1.02066 1.05322 0.87628 0.93199 0.92163 0.92596 0.93956 0.94108 0.92511 0.84723 0.91988 0.86872 0.82048 0.69813 0.88635 0.87663 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.14 71.98 0.66 -4.09 16 2 C -0.11 -4.81 4.91 30.59 0.15 -4.66 16 3 C 0.20 9.23 1.74 44.17 0.08 9.31 16 4 H 0.02 0.71 6.28 -2.38 -0.01 0.69 16 5 C -0.55 -31.43 9.02 25.60 0.23 -31.20 16 6 H 0.03 2.11 7.61 -2.91 -0.02 2.08 16 7 C 0.02 1.32 5.30 84.65 0.45 1.77 16 8 N -0.94 -58.96 13.96 21.45 0.30 -58.66 16 9 Si 0.93 43.40 25.83 68.60 1.77 45.17 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.22 -9.36 5.55 99.48 0.55 -8.81 16 13 N -0.67 -28.43 5.70 -499.48 -2.85 -31.28 16 14 C 0.01 0.49 5.15 85.56 0.44 0.93 16 15 C 0.43 13.26 7.16 27.87 0.20 13.46 16 16 O -0.48 -17.13 14.58 -3.18 -0.05 -17.17 16 17 C -0.29 -6.99 6.11 -20.18 -0.12 -7.11 16 18 C -0.05 -1.13 10.08 22.64 0.23 -0.91 16 19 C -0.06 -1.14 7.02 39.95 0.28 -0.86 16 20 C 0.56 9.92 8.31 70.02 0.58 10.50 16 21 O -0.54 -13.30 17.64 19.50 0.34 -12.95 16 22 O -0.51 -4.60 13.44 -57.80 -0.78 -5.38 16 23 N -0.50 -6.62 6.00 -171.53 -1.03 -7.65 16 24 H 0.44 2.71 8.96 -92.71 -0.83 1.88 16 25 C 0.16 2.83 7.21 42.32 0.31 3.13 16 26 C -0.10 -1.40 9.88 71.24 0.70 -0.70 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 2.00 7.15 -2.39 -0.02 1.98 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.04 1.84 4.93 -2.39 -0.01 1.83 16 32 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 33 H 0.33 15.48 7.41 -89.69 -0.66 14.82 16 34 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 35 H 0.11 3.38 6.95 -2.39 -0.02 3.36 16 36 H 0.16 3.53 8.05 -2.91 -0.02 3.50 16 37 H 0.44 0.21 9.11 -74.05 -0.67 -0.47 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 1.69 6.47 -2.39 -0.02 1.68 16 Total: -1.00 -77.03 337.96 0.69 -76.34 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -1.21 Total: 21.98 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 4.18 Total: -10.40 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -3.58 Total: -97.59 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -0.48 Total: -35.50 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.77 Total: 45.17 kcal Total: -77.03 0.69 -76.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.078 kcal (2) G-P(sol) polarization free energy of solvation -77.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds