Wall clock time and date at job start Tue Mar 31 2020 06:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47446 * 2 1 4 4 H 1.09001 * 109.46627 * 184.42464 * 3 2 1 5 5 C 1.50700 * 109.46920 * 304.41967 * 3 2 1 6 6 H 1.08008 * 119.99698 * 115.15932 * 5 3 2 7 7 C 1.37873 * 120.00235 * 295.15891 * 5 3 2 8 8 N 1.31514 * 119.99979 * 352.98584 * 7 5 3 9 9 Si 1.86800 * 120.00060 * 172.98821 * 7 5 3 10 10 H 1.48495 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47011 * 299.99933 * 9 7 5 12 12 H 1.48500 * 109.46955 * 59.99811 * 9 7 5 13 13 N 1.46899 * 109.47223 * 64.42118 * 3 2 1 14 14 C 1.46907 * 110.99863 * 85.23338 * 13 3 2 15 15 C 1.50698 * 109.47065 * 185.44514 * 14 13 3 16 16 O 1.21318 * 119.99950 * 0.02562 * 15 14 13 17 17 C 1.46623 * 120.00077 * 180.02562 * 15 14 13 18 18 C 1.41524 * 126.50393 * 359.68811 * 17 15 14 19 19 C 1.36345 * 106.97285 * 179.83717 * 18 17 15 20 20 C 1.46661 * 125.81005 * 180.12907 * 19 18 17 21 21 O 1.21605 * 120.00229 * 0.32194 * 20 19 18 22 22 O 1.34870 * 120.00023 * 180.32199 * 20 19 18 23 23 N 1.37879 * 108.37488 * 0.42695 * 19 18 17 24 24 H 0.97002 * 125.34938 * 179.74642 * 23 19 18 25 25 C 1.34084 * 109.30006 * 359.72543 * 23 19 18 26 26 C 1.50710 * 125.81778 * 180.02562 * 25 23 19 27 27 H 1.09005 * 109.46765 * 305.53832 * 1 2 3 28 28 H 1.09001 * 109.46678 * 65.53055 * 1 2 3 29 29 H 1.08997 * 109.47624 * 185.53619 * 1 2 3 30 30 H 1.08998 * 109.46951 * 239.99372 * 2 1 3 31 31 H 1.09006 * 109.46839 * 120.00283 * 2 1 3 32 32 H 0.96996 * 119.99926 * 356.28302 * 8 7 5 33 33 H 1.00899 * 111.00104 * 209.18254 * 13 3 2 34 34 H 1.08997 * 109.47204 * 305.44474 * 14 13 3 35 35 H 1.09004 * 109.46842 * 65.44088 * 14 13 3 36 36 H 1.07997 * 126.51732 * 0.02562 * 18 17 15 37 37 H 0.96703 * 116.99933 * 180.02562 * 22 20 19 38 38 H 1.09004 * 109.46671 * 269.99881 * 26 25 23 39 39 H 1.08993 * 109.46864 * 30.00036 * 26 25 23 40 40 H 1.09002 * 109.47035 * 150.00336 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1272 1.4433 -0.0793 5 6 1.4504 2.1838 -1.1721 6 1 0.7762 3.0107 -1.0041 7 6 1.7714 1.8064 -2.4587 8 7 2.6952 0.8933 -2.6650 9 14 0.8942 2.5919 -3.9089 10 1 1.4182 2.0181 -5.1743 11 1 -0.5632 2.3247 -3.8097 12 1 1.1308 4.0579 -3.8954 13 7 1.6396 2.1035 1.2492 14 6 2.6071 1.8335 2.3213 15 6 2.0973 2.4131 3.6156 16 8 1.0324 2.9936 3.6425 17 6 2.8884 2.2754 4.8424 18 6 4.1384 1.6242 4.9694 19 6 4.5146 1.7360 6.2752 20 6 5.7508 1.2066 6.8604 21 8 6.5483 0.6115 6.1614 22 8 6.0032 1.3798 8.1739 23 7 3.5317 2.4255 6.9531 24 1 3.5474 2.6401 7.8990 25 6 2.5511 2.7533 6.0994 26 6 1.2963 3.5123 6.4469 27 1 -0.3633 0.5974 0.8363 28 1 -0.3633 0.4257 -0.9354 29 1 -0.3634 -1.0228 0.0991 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.1885 0.5245 -1.9157 33 1 1.5205 3.0959 1.1112 34 1 2.7364 0.7569 2.4313 35 1 3.5643 2.2907 2.0704 36 1 4.6910 1.1346 4.1813 37 1 6.8311 1.0135 8.5139 38 1 0.5160 2.8097 6.7395 39 1 1.5007 4.1932 7.2731 40 1 0.9648 4.0828 5.5793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:32 Heat of formation + Delta-G solvation = -94.899960 kcal Electronic energy + Delta-G solvation = -23187.429530 eV Core-core repulsion = 19581.587914 eV Total energy + Delta-G solvation = -3605.841616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.95047 -40.03751 -38.60782 -36.47700 -36.20053 -32.81183 -32.08296 -31.78946 -30.62966 -27.97860 -27.04852 -24.87140 -23.71148 -23.36923 -21.67510 -20.73223 -19.42122 -19.18161 -18.29243 -17.86775 -16.88084 -16.22669 -15.69966 -15.27460 -15.08313 -14.73928 -14.55064 -13.86700 -13.77627 -13.70880 -13.54236 -13.21049 -13.17385 -12.90156 -12.83847 -12.10226 -11.98760 -11.97093 -11.60158 -11.53711 -11.16643 -11.06493 -10.74000 -10.10429 -10.06048 -9.97134 -9.64251 -9.43407 -9.27874 -8.57772 -8.47527 -8.27446 -7.33999 -6.31272 -4.01636 0.87028 1.41080 2.41609 2.64158 2.75058 3.26241 3.47334 3.49818 3.67807 4.23474 4.45627 4.56967 4.65130 4.87223 5.07769 5.27898 5.31783 5.38340 5.44010 5.51863 5.75767 5.88809 5.90861 5.98774 6.02451 6.23711 6.35818 6.44030 6.52632 6.67854 6.88202 7.01007 7.10267 7.34136 7.47872 7.50718 7.63223 7.88098 7.99374 8.14045 8.55328 8.62741 8.91189 9.68128 11.05702 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022294 B = 0.003259 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.643658 B = 8588.508799 C = 9265.216428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C 0.204 3.796 4 H -0.007 1.007 5 C -0.593 4.593 6 H 0.054 0.946 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.667 5.667 14 C 0.019 3.981 15 C 0.425 3.575 16 O -0.448 6.448 17 C -0.260 4.260 18 C -0.039 4.039 19 C -0.060 4.060 20 C 0.555 3.445 21 O -0.502 6.502 22 O -0.523 6.523 23 N -0.519 5.519 24 H 0.425 0.575 25 C 0.140 3.860 26 C -0.101 4.101 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.015 0.985 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.270 0.730 33 H 0.341 0.659 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.163 0.837 37 H 0.418 0.582 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 2.928 23.084 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.144 4.144 3 C 0.096 3.904 4 H 0.011 0.989 5 C -0.631 4.631 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.546 5.546 9 Si 0.893 3.107 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.299 5.299 14 C -0.112 4.112 15 C 0.302 3.698 16 O -0.323 6.323 17 C -0.267 4.267 18 C -0.064 4.064 19 C -0.168 4.168 20 C 0.399 3.601 21 O -0.390 6.390 22 O -0.336 6.336 23 N -0.115 5.115 24 H 0.264 0.736 25 C 0.016 3.984 26 C -0.159 4.159 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.159 0.841 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.180 0.820 37 H 0.277 0.723 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.260 2.676 21.424 21.708 hybrid contribution 1.739 0.239 2.220 2.830 sum 3.999 2.915 23.643 24.156 Atomic orbital electron populations 1.21427 0.96436 0.97478 1.02325 1.21490 0.96482 0.98165 0.98274 1.19267 0.93145 0.91794 0.86186 0.98916 1.21943 1.31068 1.18376 0.91763 0.92739 1.25683 0.96387 0.95935 1.00057 1.70792 1.21278 1.27031 1.35548 0.83611 0.75803 0.75496 0.75804 1.20933 1.21353 1.21586 1.60374 1.45558 1.16863 1.07122 1.22166 0.95555 1.01853 0.91593 1.21683 0.84164 0.76070 0.87931 1.90467 1.20904 1.33458 1.87454 1.20310 0.99518 1.11955 0.94936 1.21410 0.94397 0.96694 0.93879 1.18758 0.92411 1.12635 0.92957 1.19485 0.84581 0.76368 0.79630 1.90995 1.46741 1.39534 1.61716 1.84544 1.47028 1.75853 1.26223 1.41682 1.15748 1.42679 1.11392 0.73647 1.21284 0.91059 0.97035 0.89027 1.20730 0.91528 0.99420 1.04181 0.92863 0.92466 0.96560 0.92328 0.96229 0.91854 0.84120 0.88564 0.92944 0.81956 0.72275 0.89474 0.91219 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.43 37.16 0.35 -2.37 16 2 C -0.11 -2.51 5.51 -26.73 -0.15 -2.66 16 3 C 0.20 5.04 1.93 -68.87 -0.13 4.90 16 4 H -0.01 -0.18 7.22 -51.93 -0.37 -0.55 16 5 C -0.59 -16.20 7.13 -34.44 -0.25 -16.45 16 6 H 0.05 1.51 7.67 -52.48 -0.40 1.10 16 7 C 0.02 0.67 5.26 -17.82 -0.09 0.58 16 8 N -0.91 -26.83 12.94 55.43 0.72 -26.12 16 9 Si 1.06 25.08 29.91 -169.99 -5.08 20.00 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.67 -14.40 5.17 -109.22 -0.56 -14.97 16 14 C 0.02 0.33 5.44 -4.97 -0.03 0.31 16 15 C 0.42 6.80 7.18 -30.93 -0.22 6.57 16 16 O -0.45 -8.08 14.77 5.52 0.08 -7.99 16 17 C -0.26 -3.40 6.11 -105.11 -0.64 -4.05 16 18 C -0.04 -0.47 10.08 -39.01 -0.39 -0.87 16 19 C -0.06 -0.65 7.02 -82.43 -0.58 -1.23 16 20 C 0.55 5.70 8.31 34.13 0.28 5.98 16 21 O -0.50 -6.75 17.64 -19.35 -0.34 -7.09 16 22 O -0.52 -3.38 13.44 -40.96 -0.55 -3.93 16 23 N -0.52 -4.39 6.00 -5.57 -0.03 -4.42 16 24 H 0.42 2.24 8.96 -40.82 -0.37 1.87 16 25 C 0.14 1.45 7.21 -81.45 -0.59 0.87 16 26 C -0.10 -0.84 9.88 36.01 0.36 -0.48 16 27 H 0.05 1.21 7.59 -51.93 -0.39 0.81 16 28 H 0.06 1.40 7.31 -51.93 -0.38 1.02 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 1.51 6.35 -51.93 -0.33 1.18 16 31 H 0.02 0.42 7.32 -51.93 -0.38 0.04 16 32 H 0.27 7.93 6.03 -40.82 -0.25 7.69 16 33 H 0.34 7.54 8.15 -39.29 -0.32 7.22 16 34 H 0.10 1.65 7.29 -51.93 -0.38 1.27 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.16 1.93 8.05 -52.49 -0.42 1.50 16 37 H 0.42 0.91 9.11 45.56 0.42 1.32 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.11 1.13 6.47 -51.93 -0.34 0.79 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -33.94 341.77 -7.11 -41.05 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.40 Total: 7.22 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -2.08 Total: -8.89 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.12 Total: -45.51 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.81 Total: -19.02 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.94 -7.11 -41.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.853 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds