Wall clock time and date at job start Tue Mar 31 2020 06:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47446 * 2 1 4 4 H 1.09001 * 109.46627 * 184.42464 * 3 2 1 5 5 C 1.50700 * 109.46920 * 304.41967 * 3 2 1 6 6 H 1.08008 * 119.99698 * 115.15932 * 5 3 2 7 7 C 1.37873 * 120.00235 * 295.15891 * 5 3 2 8 8 N 1.31514 * 119.99979 * 352.98584 * 7 5 3 9 9 Si 1.86800 * 120.00060 * 172.98821 * 7 5 3 10 10 H 1.48495 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47011 * 299.99933 * 9 7 5 12 12 H 1.48500 * 109.46955 * 59.99811 * 9 7 5 13 13 N 1.46899 * 109.47223 * 64.42118 * 3 2 1 14 14 C 1.46907 * 110.99863 * 85.23338 * 13 3 2 15 15 C 1.50698 * 109.47065 * 185.44514 * 14 13 3 16 16 O 1.21318 * 119.99950 * 0.02562 * 15 14 13 17 17 C 1.46623 * 120.00077 * 180.02562 * 15 14 13 18 18 C 1.41524 * 126.50393 * 359.68811 * 17 15 14 19 19 C 1.36345 * 106.97285 * 179.83717 * 18 17 15 20 20 C 1.46661 * 125.81005 * 180.12907 * 19 18 17 21 21 O 1.21605 * 120.00229 * 0.32194 * 20 19 18 22 22 O 1.34870 * 120.00023 * 180.32199 * 20 19 18 23 23 N 1.37879 * 108.37488 * 0.42695 * 19 18 17 24 24 H 0.97002 * 125.34938 * 179.74642 * 23 19 18 25 25 C 1.34084 * 109.30006 * 359.72543 * 23 19 18 26 26 C 1.50710 * 125.81778 * 180.02562 * 25 23 19 27 27 H 1.09005 * 109.46765 * 305.53832 * 1 2 3 28 28 H 1.09001 * 109.46678 * 65.53055 * 1 2 3 29 29 H 1.08997 * 109.47624 * 185.53619 * 1 2 3 30 30 H 1.08998 * 109.46951 * 239.99372 * 2 1 3 31 31 H 1.09006 * 109.46839 * 120.00283 * 2 1 3 32 32 H 0.96996 * 119.99926 * 356.28302 * 8 7 5 33 33 H 1.00899 * 111.00104 * 209.18254 * 13 3 2 34 34 H 1.08997 * 109.47204 * 305.44474 * 14 13 3 35 35 H 1.09004 * 109.46842 * 65.44088 * 14 13 3 36 36 H 1.07997 * 126.51732 * 0.02562 * 18 17 15 37 37 H 0.96703 * 116.99933 * 180.02562 * 22 20 19 38 38 H 1.09004 * 109.46671 * 269.99881 * 26 25 23 39 39 H 1.08993 * 109.46864 * 30.00036 * 26 25 23 40 40 H 1.09002 * 109.47035 * 150.00336 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1272 1.4433 -0.0793 5 6 1.4504 2.1838 -1.1721 6 1 0.7762 3.0107 -1.0041 7 6 1.7714 1.8064 -2.4587 8 7 2.6952 0.8933 -2.6650 9 14 0.8942 2.5919 -3.9089 10 1 1.4182 2.0181 -5.1743 11 1 -0.5632 2.3247 -3.8097 12 1 1.1308 4.0579 -3.8954 13 7 1.6396 2.1035 1.2492 14 6 2.6071 1.8335 2.3213 15 6 2.0973 2.4131 3.6156 16 8 1.0324 2.9936 3.6425 17 6 2.8884 2.2754 4.8424 18 6 4.1384 1.6242 4.9694 19 6 4.5146 1.7360 6.2752 20 6 5.7508 1.2066 6.8604 21 8 6.5483 0.6115 6.1614 22 8 6.0032 1.3798 8.1739 23 7 3.5317 2.4255 6.9531 24 1 3.5474 2.6401 7.8990 25 6 2.5511 2.7533 6.0994 26 6 1.2963 3.5123 6.4469 27 1 -0.3633 0.5974 0.8363 28 1 -0.3633 0.4257 -0.9354 29 1 -0.3634 -1.0228 0.0991 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.1885 0.5245 -1.9157 33 1 1.5205 3.0959 1.1112 34 1 2.7364 0.7569 2.4313 35 1 3.5643 2.2907 2.0704 36 1 4.6910 1.1346 4.1813 37 1 6.8311 1.0135 8.5139 38 1 0.5160 2.8097 6.7395 39 1 1.5007 4.1932 7.2731 40 1 0.9648 4.0828 5.5793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:31 Heat of formation + Delta-G solvation = -119.455217 kcal Electronic energy + Delta-G solvation = -23188.494326 eV Core-core repulsion = 19581.587914 eV Total energy + Delta-G solvation = -3606.906412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.81262 -40.85553 -39.89953 -38.05140 -37.19644 -34.60494 -33.12138 -32.72162 -32.43253 -29.21818 -28.27179 -26.58768 -25.40529 -24.64964 -22.79480 -21.58124 -21.11363 -20.28818 -19.50027 -18.69908 -18.60102 -17.06021 -16.80511 -16.62013 -16.36315 -15.96701 -15.75653 -15.61200 -15.19222 -14.96400 -14.76987 -14.64484 -14.38636 -13.92782 -13.72564 -13.51044 -13.44953 -13.23457 -12.99669 -12.83167 -12.70684 -12.59409 -12.02815 -11.97966 -11.93480 -11.85929 -11.58725 -10.66986 -10.56029 -10.33461 -10.32693 -9.46346 -9.12386 -8.54312 -6.24838 0.04719 0.34156 1.56383 1.63311 1.65210 1.76743 1.82406 2.06370 2.17636 2.59838 3.03326 3.24560 3.69799 3.71558 3.87483 4.08030 4.27523 4.35806 4.41435 4.46185 4.53321 4.58478 4.67758 4.69574 4.77399 4.87466 5.05385 5.15112 5.21249 5.30721 5.40850 5.43667 5.53471 5.57426 5.71910 5.90929 6.10752 6.22612 6.48502 6.60900 6.70926 6.84169 6.84828 7.52613 8.83038 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022294 B = 0.003259 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.643658 B = 8588.508799 C = 9265.216428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C 0.208 3.792 4 H -0.033 1.033 5 C -0.599 4.599 6 H 0.047 0.953 7 C -0.022 4.022 8 N -0.933 5.933 9 Si 1.107 2.893 10 H -0.286 1.286 11 H -0.274 1.274 12 H -0.273 1.273 13 N -0.668 5.668 14 C 0.016 3.984 15 C 0.432 3.568 16 O -0.474 6.474 17 C -0.289 4.289 18 C -0.054 4.054 19 C -0.060 4.060 20 C 0.565 3.435 21 O -0.539 6.539 22 O -0.506 6.506 23 N -0.495 5.495 24 H 0.444 0.556 25 C 0.160 3.840 26 C -0.100 4.100 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.259 0.741 33 H 0.335 0.665 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.157 0.843 37 H 0.439 0.561 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.974 3.516 25.595 26.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C 0.099 3.901 4 H -0.015 1.015 5 C -0.638 4.638 6 H 0.066 0.934 7 C -0.221 4.221 8 N -0.571 5.571 9 Si 0.930 3.070 10 H -0.212 1.212 11 H -0.199 1.199 12 H -0.199 1.199 13 N -0.299 5.299 14 C -0.114 4.114 15 C 0.312 3.688 16 O -0.351 6.351 17 C -0.296 4.296 18 C -0.079 4.079 19 C -0.168 4.168 20 C 0.410 3.590 21 O -0.430 6.430 22 O -0.321 6.321 23 N -0.093 5.093 24 H 0.287 0.713 25 C 0.033 3.967 26 C -0.157 4.157 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.152 0.848 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.174 0.826 37 H 0.302 0.698 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.839 3.265 24.021 24.312 hybrid contribution 1.944 0.063 1.610 2.525 sum 3.783 3.328 25.632 26.122 Atomic orbital electron populations 1.21304 0.95381 0.98914 1.01005 1.21392 0.97292 0.97330 0.97955 1.19107 0.91383 0.92529 0.87051 1.01509 1.22211 1.30495 1.18192 0.92876 0.93447 1.26963 0.96364 0.95811 1.02944 1.70900 1.22565 1.28504 1.35102 0.83046 0.75475 0.75587 0.72854 1.21196 1.19937 1.19865 1.60306 1.46811 1.16205 1.06562 1.22252 0.95040 1.02447 0.91629 1.21510 0.83962 0.75205 0.88144 1.90460 1.22010 1.34885 1.87776 1.19988 1.00078 1.14578 0.94929 1.21435 0.94397 0.97174 0.94869 1.18752 0.92975 1.12420 0.92648 1.19326 0.83802 0.75420 0.80411 1.90992 1.47861 1.41253 1.62909 1.84491 1.48435 1.75311 1.23867 1.41581 1.14375 1.41229 1.12088 0.71345 1.21469 0.91539 0.95514 0.88174 1.20798 0.90563 0.99814 1.04548 0.92885 0.94680 0.93968 0.94698 0.94374 0.93043 0.84750 0.88177 0.92468 0.82563 0.69782 0.88422 0.87583 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.92 9.43 71.98 0.68 -4.24 16 2 C -0.10 -4.86 5.51 30.59 0.17 -4.70 16 3 C 0.21 10.54 1.93 44.17 0.09 10.62 16 4 H -0.03 -1.79 7.22 -2.39 -0.02 -1.81 16 5 C -0.60 -33.36 7.13 25.60 0.18 -33.18 16 6 H 0.05 2.66 7.67 -2.91 -0.02 2.64 16 7 C -0.02 -1.23 5.26 84.65 0.45 -0.78 16 8 N -0.93 -56.25 12.94 21.45 0.28 -55.98 16 9 Si 1.11 50.64 29.91 68.60 2.05 52.70 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 N -0.67 -29.39 5.17 -499.45 -2.58 -31.98 16 14 C 0.02 0.59 5.44 85.56 0.47 1.06 16 15 C 0.43 13.90 7.18 27.88 0.20 14.10 16 16 O -0.47 -17.15 14.77 -3.15 -0.05 -17.20 16 17 C -0.29 -7.34 6.11 -20.18 -0.12 -7.46 16 18 C -0.05 -1.29 10.08 22.64 0.23 -1.06 16 19 C -0.06 -1.18 7.02 39.95 0.28 -0.90 16 20 C 0.56 10.50 8.31 70.02 0.58 11.08 16 21 O -0.54 -14.05 17.64 19.49 0.34 -13.70 16 22 O -0.51 -4.91 13.44 -57.84 -0.78 -5.69 16 23 N -0.50 -6.87 6.00 -171.53 -1.03 -7.90 16 24 H 0.44 2.84 8.96 -92.71 -0.83 2.01 16 25 C 0.16 2.95 7.21 42.32 0.31 3.25 16 26 C -0.10 -1.39 9.88 71.24 0.70 -0.69 16 27 H 0.05 2.37 7.59 -2.38 -0.02 2.36 16 28 H 0.03 1.71 7.31 -2.39 -0.02 1.69 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.03 1.83 6.35 -2.39 -0.02 1.82 16 31 H 0.04 1.66 7.32 -2.38 -0.02 1.64 16 32 H 0.26 15.78 6.03 -92.71 -0.56 15.22 16 33 H 0.34 15.21 8.15 -89.69 -0.73 14.48 16 34 H 0.10 3.49 7.29 -2.39 -0.02 3.47 16 35 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.16 3.82 8.05 -2.91 -0.02 3.80 16 37 H 0.44 0.48 9.11 -74.06 -0.67 -0.19 16 38 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 1.68 6.47 -2.39 -0.02 1.67 16 Total: -1.00 -74.46 341.77 1.52 -72.94 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -0.92 Total: 19.70 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 4.20 Total: -12.89 kcal Atomic # 7 Polarization: -92.52 SS G_CDS: -3.33 Total: -95.86 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.48 Total: -36.59 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.70 kcal Total: -74.46 1.52 -72.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.513 kcal (2) G-P(sol) polarization free energy of solvation -74.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds