Wall clock time and date at job start Tue Mar 31 2020 06:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46872 * 2 1 4 4 H 1.09002 * 109.47107 * 54.18719 * 3 2 1 5 5 C 1.50700 * 109.46862 * 174.18171 * 3 2 1 6 6 H 1.08002 * 119.99610 * 114.31161 * 5 3 2 7 7 C 1.37879 * 120.00297 * 294.30553 * 5 3 2 8 8 N 1.31512 * 119.99727 * 153.94619 * 7 5 3 9 9 Si 1.86796 * 120.00076 * 333.94548 * 7 5 3 10 10 H 1.48498 * 109.47291 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47140 * 299.99895 * 9 7 5 12 12 H 1.48500 * 109.47071 * 59.99863 * 9 7 5 13 13 N 1.46497 * 109.47442 * 294.18638 * 3 2 1 14 14 C 1.34772 * 120.00051 * 84.99609 * 13 3 2 15 15 O 1.21609 * 120.00518 * 0.02562 * 14 13 3 16 16 C 1.47403 * 119.99753 * 180.02562 * 14 13 3 17 17 C 1.38238 * 126.45227 * 89.69480 * 16 14 13 18 18 C 1.50704 * 125.79425 * 359.97438 * 17 16 14 19 19 N 1.34238 * 108.41294 * 179.82801 * 17 16 14 20 20 H 0.97003 * 125.39588 * 180.20157 * 19 17 16 21 21 C 1.37827 * 109.21065 * 0.43600 * 19 17 16 22 22 C 1.46631 * 125.86240 * 179.74527 * 21 19 17 23 23 O 1.21605 * 120.00105 * 179.97438 * 22 21 19 24 24 O 1.34871 * 120.00017 * 359.97438 * 22 21 19 25 25 C 1.36447 * 108.27611 * 359.72777 * 21 19 17 26 26 C 1.50704 * 126.49497 * 180.02562 * 25 21 19 27 27 H 1.09003 * 109.46729 * 60.00074 * 1 2 3 28 28 H 1.08999 * 109.46814 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47234 * 299.99809 * 1 2 3 30 30 H 1.08993 * 109.47234 * 240.00190 * 2 1 3 31 31 H 1.08994 * 109.46973 * 119.99887 * 2 1 3 32 32 H 0.96997 * 120.00115 * 354.95698 * 8 7 5 33 33 H 0.97006 * 119.99686 * 265.00032 * 13 3 2 34 34 H 1.09003 * 109.47197 * 90.00279 * 18 17 16 35 35 H 1.09001 * 109.46721 * 209.99807 * 18 17 16 36 36 H 1.08998 * 109.47024 * 330.00198 * 18 17 16 37 37 H 0.96703 * 117.00244 * 179.97438 * 24 22 21 38 38 H 1.09004 * 109.47122 * 269.97346 * 26 25 21 39 39 H 1.08995 * 109.47155 * 29.97658 * 26 25 21 40 40 H 1.09000 * 109.47293 * 149.97996 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5941 1.9855 0.8334 5 6 3.5401 1.4450 0.1440 6 1 4.1597 1.8019 -0.6654 7 6 4.1216 0.9917 1.3091 8 7 5.3448 0.5091 1.2890 9 14 3.1720 1.0631 2.9161 10 1 4.0129 0.5190 4.0126 11 1 2.8152 2.4726 3.2181 12 1 1.9328 0.2538 2.7952 13 7 1.6693 2.0916 -1.2599 14 6 0.4536 2.6578 -1.3941 15 8 -0.3354 2.6304 -0.4691 16 6 0.0805 3.3104 -2.6620 17 6 -0.5296 2.7089 -3.7469 18 6 -0.9318 1.2595 -3.8403 19 7 -0.7058 3.6357 -4.7019 20 1 -1.1153 3.4798 -5.5674 21 6 -0.2080 4.8425 -4.2600 22 6 -0.2078 6.0998 -5.0147 23 8 0.2611 7.1064 -4.5190 24 8 -0.7277 6.1397 -6.2585 25 6 0.2842 4.6667 -2.9996 26 6 0.9235 5.7202 -2.1320 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8108 0.4039 0.4448 33 1 2.2988 2.1138 -1.9976 34 1 -1.9509 1.1408 -3.4722 35 1 -0.8806 0.9346 -4.8794 36 1 -0.2548 0.6550 -3.2367 37 1 -0.7053 6.9911 -6.7166 38 1 1.9980 5.7384 -2.3148 39 1 0.4978 6.6948 -2.3706 40 1 0.7373 5.4892 -1.0832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:05 Heat of formation + Delta-G solvation = -102.194354 kcal Electronic energy + Delta-G solvation = -24126.301792 eV Core-core repulsion = 20520.143868 eV Total energy + Delta-G solvation = -3606.157924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80900 -39.86995 -38.68235 -36.36319 -35.12934 -33.09127 -32.44286 -31.89764 -31.06516 -28.13579 -27.13471 -26.99776 -23.58545 -22.41127 -21.91169 -20.00306 -19.56281 -19.21730 -18.77441 -17.61423 -17.46097 -16.13627 -15.84851 -15.58872 -15.16917 -14.69739 -14.41190 -13.87151 -13.47173 -13.40477 -13.15103 -13.10097 -12.88637 -12.55494 -12.42038 -12.38025 -12.32193 -12.05222 -11.82366 -11.72476 -11.47134 -10.79568 -10.68985 -10.65521 -10.40503 -9.83310 -9.78770 -9.28889 -9.14113 -8.81907 -8.30615 -8.21503 -8.02234 -6.58034 -4.16600 1.04177 2.23217 2.60138 2.91548 2.95085 3.27969 3.43788 3.49173 3.64703 4.20583 4.47301 4.57351 4.79138 5.03011 5.11212 5.13823 5.33793 5.39632 5.63460 5.72139 5.77559 5.91643 6.07838 6.10311 6.11174 6.17273 6.26482 6.31937 6.55032 6.70036 6.73682 6.81929 7.00206 7.08118 7.14633 7.40368 7.47947 7.65902 7.73171 8.28318 8.56582 8.75339 9.06246 9.48129 10.79784 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.004330 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.173536 B = 6464.584306 C = 7072.534672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.249 3.751 4 H 0.041 0.959 5 C -0.627 4.627 6 H 0.063 0.937 7 C 0.049 3.951 8 N -0.887 5.887 9 Si 1.028 2.972 10 H -0.284 1.284 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.692 5.692 14 C 0.579 3.421 15 O -0.545 6.545 16 C -0.216 4.216 17 C 0.111 3.889 18 C -0.097 4.097 19 N -0.520 5.520 20 H 0.423 0.577 21 C -0.063 4.063 22 C 0.555 3.445 23 O -0.503 6.503 24 O -0.524 6.524 25 C -0.012 4.012 26 C -0.100 4.100 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.271 0.729 33 H 0.393 0.607 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.416 0.584 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 4.982 -15.472 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C 0.146 3.854 4 H 0.058 0.942 5 C -0.665 4.665 6 H 0.081 0.919 7 C -0.159 4.159 8 N -0.519 5.519 9 Si 0.855 3.145 10 H -0.209 1.209 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.339 5.339 14 C 0.363 3.637 15 O -0.423 6.423 16 C -0.226 4.226 17 C -0.012 4.012 18 C -0.155 4.155 19 N -0.116 5.116 20 H 0.262 0.738 21 C -0.171 4.171 22 C 0.401 3.599 23 O -0.392 6.392 24 O -0.337 6.337 25 C -0.021 4.021 26 C -0.157 4.157 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.226 0.774 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.275 0.725 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.956 4.601 -12.978 18.906 hybrid contribution 0.027 0.813 -2.903 3.015 sum -12.930 5.414 -15.881 21.182 Atomic orbital electron populations 1.21926 0.97462 0.98785 1.02115 1.22230 0.93629 0.99760 1.01372 1.19031 0.95816 0.88451 0.82095 0.94156 1.21982 0.89742 1.49922 1.04807 0.91922 1.25584 0.96608 0.91690 1.02007 1.70870 1.13884 1.36541 1.30587 0.84244 0.76041 0.77703 0.76495 1.20927 1.20618 1.19908 1.46290 1.14209 1.55383 1.18012 1.17299 0.82580 0.78188 0.85642 1.90754 1.51057 1.59769 1.40743 1.19612 1.12068 0.94158 0.96715 1.20771 1.00081 0.92176 0.88139 1.20577 1.03459 0.87996 1.03438 1.41433 1.46909 1.07343 1.15908 0.73835 1.18437 1.17255 0.84748 0.96663 1.19459 0.74396 0.87162 0.78921 1.90940 1.44243 1.34812 1.69180 1.84555 1.76513 1.42925 1.29751 1.19696 0.96743 0.93994 0.91620 1.20511 1.00441 0.96423 0.98361 0.93179 0.95136 0.92962 0.93187 0.91883 0.91903 0.77386 0.89654 0.90807 0.88901 0.72550 0.90455 0.89949 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.53 37.16 0.32 -2.53 16 2 C -0.13 -2.86 5.37 -26.73 -0.14 -3.00 16 3 C 0.25 5.88 1.84 -69.08 -0.13 5.76 16 4 H 0.04 1.04 6.12 -51.93 -0.32 0.73 16 5 C -0.63 -16.74 8.92 -34.44 -0.31 -17.05 16 6 H 0.06 1.76 7.96 -52.49 -0.42 1.34 16 7 C 0.05 1.37 5.15 -17.82 -0.09 1.28 16 8 N -0.89 -26.02 13.70 55.43 0.76 -25.26 16 9 Si 1.03 24.90 26.56 -169.99 -4.51 20.39 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.26 6.34 56.52 0.36 -5.90 16 13 N -0.69 -13.98 5.03 -56.02 -0.28 -14.26 16 14 C 0.58 11.25 5.59 -12.53 -0.07 11.18 16 15 O -0.54 -12.26 14.25 5.27 0.08 -12.18 16 16 C -0.22 -3.47 5.89 -105.02 -0.62 -4.09 16 17 C 0.11 1.38 7.20 -81.54 -0.59 0.79 16 18 C -0.10 -0.94 10.24 36.01 0.37 -0.57 16 19 N -0.52 -5.47 6.01 -5.63 -0.03 -5.50 16 20 H 0.42 3.00 8.96 -40.82 -0.37 2.64 16 21 C -0.06 -0.82 7.02 -82.43 -0.58 -1.40 16 22 C 0.56 6.60 8.31 34.12 0.28 6.89 16 23 O -0.50 -7.24 15.48 -19.35 -0.30 -7.54 16 24 O -0.52 -4.12 13.44 -40.96 -0.55 -4.67 16 25 C -0.01 -0.19 6.21 -104.12 -0.65 -0.83 16 26 C -0.10 -1.54 9.63 36.01 0.35 -1.19 16 27 H 0.05 0.94 5.45 -51.93 -0.28 0.66 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.09 7.89 -51.93 -0.41 0.68 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.45 5.77 -51.93 -0.30 1.15 16 32 H 0.27 7.85 8.73 -40.82 -0.36 7.50 16 33 H 0.39 7.35 8.51 -40.82 -0.35 7.00 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 1.04 7.75 -51.93 -0.40 0.64 16 37 H 0.42 1.40 9.11 45.56 0.42 1.81 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.21 6.41 -51.93 -0.33 0.88 16 40 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -33.58 336.35 -6.12 -39.70 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.49 Total: 9.05 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.85 Total: -4.79 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.44 Total: -45.02 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.77 Total: -24.39 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -4.51 Total: 20.39 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.58 -6.12 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.491 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds