Wall clock time and date at job start Tue Mar 31 2020 06:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46872 * 2 1 4 4 H 1.09002 * 109.47107 * 54.18719 * 3 2 1 5 5 C 1.50700 * 109.46862 * 174.18171 * 3 2 1 6 6 H 1.08002 * 119.99610 * 114.31161 * 5 3 2 7 7 C 1.37879 * 120.00297 * 294.30553 * 5 3 2 8 8 N 1.31512 * 119.99727 * 153.94619 * 7 5 3 9 9 Si 1.86796 * 120.00076 * 333.94548 * 7 5 3 10 10 H 1.48498 * 109.47291 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47140 * 299.99895 * 9 7 5 12 12 H 1.48500 * 109.47071 * 59.99863 * 9 7 5 13 13 N 1.46497 * 109.47442 * 294.18638 * 3 2 1 14 14 C 1.34772 * 120.00051 * 84.99609 * 13 3 2 15 15 O 1.21609 * 120.00518 * 0.02562 * 14 13 3 16 16 C 1.47403 * 119.99753 * 180.02562 * 14 13 3 17 17 C 1.38238 * 126.45227 * 89.69480 * 16 14 13 18 18 C 1.50704 * 125.79425 * 359.97438 * 17 16 14 19 19 N 1.34238 * 108.41294 * 179.82801 * 17 16 14 20 20 H 0.97003 * 125.39588 * 180.20157 * 19 17 16 21 21 C 1.37827 * 109.21065 * 0.43600 * 19 17 16 22 22 C 1.46631 * 125.86240 * 179.74527 * 21 19 17 23 23 O 1.21605 * 120.00105 * 179.97438 * 22 21 19 24 24 O 1.34871 * 120.00017 * 359.97438 * 22 21 19 25 25 C 1.36447 * 108.27611 * 359.72777 * 21 19 17 26 26 C 1.50704 * 126.49497 * 180.02562 * 25 21 19 27 27 H 1.09003 * 109.46729 * 60.00074 * 1 2 3 28 28 H 1.08999 * 109.46814 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47234 * 299.99809 * 1 2 3 30 30 H 1.08993 * 109.47234 * 240.00190 * 2 1 3 31 31 H 1.08994 * 109.46973 * 119.99887 * 2 1 3 32 32 H 0.96997 * 120.00115 * 354.95698 * 8 7 5 33 33 H 0.97006 * 119.99686 * 265.00032 * 13 3 2 34 34 H 1.09003 * 109.47197 * 90.00279 * 18 17 16 35 35 H 1.09001 * 109.46721 * 209.99807 * 18 17 16 36 36 H 1.08998 * 109.47024 * 330.00198 * 18 17 16 37 37 H 0.96703 * 117.00244 * 179.97438 * 24 22 21 38 38 H 1.09004 * 109.47122 * 269.97346 * 26 25 21 39 39 H 1.08995 * 109.47155 * 29.97658 * 26 25 21 40 40 H 1.09000 * 109.47293 * 149.97996 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5941 1.9855 0.8334 5 6 3.5401 1.4450 0.1440 6 1 4.1597 1.8019 -0.6654 7 6 4.1216 0.9917 1.3091 8 7 5.3448 0.5091 1.2890 9 14 3.1720 1.0631 2.9161 10 1 4.0129 0.5190 4.0126 11 1 2.8152 2.4726 3.2181 12 1 1.9328 0.2538 2.7952 13 7 1.6693 2.0916 -1.2599 14 6 0.4536 2.6578 -1.3941 15 8 -0.3354 2.6304 -0.4691 16 6 0.0805 3.3104 -2.6620 17 6 -0.5296 2.7089 -3.7469 18 6 -0.9318 1.2595 -3.8403 19 7 -0.7058 3.6357 -4.7019 20 1 -1.1153 3.4798 -5.5674 21 6 -0.2080 4.8425 -4.2600 22 6 -0.2078 6.0998 -5.0147 23 8 0.2611 7.1064 -4.5190 24 8 -0.7277 6.1397 -6.2585 25 6 0.2842 4.6667 -2.9996 26 6 0.9235 5.7202 -2.1320 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8108 0.4039 0.4448 33 1 2.2988 2.1138 -1.9976 34 1 -1.9509 1.1408 -3.4722 35 1 -0.8806 0.9346 -4.8794 36 1 -0.2548 0.6550 -3.2367 37 1 -0.7053 6.9911 -6.7166 38 1 1.9980 5.7384 -2.3148 39 1 0.4978 6.6948 -2.3706 40 1 0.7373 5.4892 -1.0832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:05 Heat of formation + Delta-G solvation = -127.746241 kcal Electronic energy + Delta-G solvation = -24127.409805 eV Core-core repulsion = 20520.143868 eV Total energy + Delta-G solvation = -3607.265937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.84463 -40.85289 -40.19901 -37.18937 -36.93687 -34.44205 -34.16954 -33.27929 -32.39854 -29.39562 -28.78460 -28.02872 -24.98002 -24.07040 -23.07919 -21.57291 -20.96140 -20.52600 -19.87924 -19.27545 -18.47422 -17.44004 -17.12389 -16.92135 -16.48141 -15.91171 -15.59035 -15.47133 -14.91878 -14.67364 -14.43634 -14.36543 -14.25797 -14.13688 -13.92327 -13.77256 -13.43306 -13.29543 -13.23223 -12.68915 -12.63574 -12.58439 -12.44735 -12.24062 -11.74145 -11.70214 -11.53027 -11.19974 -10.87576 -10.38244 -9.95338 -9.75526 -9.33424 -8.78465 -6.37058 0.06722 1.12756 1.48331 1.51321 1.62353 1.72198 1.83586 1.91818 2.10689 2.44700 2.71945 2.96358 3.67057 3.84479 3.92522 4.18258 4.35247 4.38921 4.42866 4.46865 4.60311 4.66348 4.67106 4.71974 4.90343 4.93592 5.03380 5.11917 5.15571 5.28259 5.35806 5.37757 5.54754 5.61406 5.63157 5.72120 5.76547 6.06136 6.33915 6.58036 6.90408 6.90617 7.30320 7.48854 8.58310 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.004330 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.173536 B = 6464.584306 C = 7072.534672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.254 3.746 4 H 0.019 0.981 5 C -0.625 4.625 6 H 0.040 0.960 7 C 0.009 3.991 8 N -0.916 5.916 9 Si 1.060 2.940 10 H -0.281 1.281 11 H -0.277 1.277 12 H -0.252 1.252 13 N -0.692 5.692 14 C 0.588 3.412 15 O -0.578 6.578 16 C -0.255 4.255 17 C 0.134 3.866 18 C -0.098 4.098 19 N -0.494 5.494 20 H 0.444 0.556 21 C -0.060 4.060 22 C 0.564 3.436 23 O -0.533 6.533 24 O -0.506 6.506 25 C -0.040 4.040 26 C -0.094 4.094 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.262 0.738 33 H 0.400 0.600 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.438 0.562 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.921 4.525 -17.736 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.149 3.851 4 H 0.037 0.963 5 C -0.662 4.662 6 H 0.058 0.942 7 C -0.194 4.194 8 N -0.549 5.549 9 Si 0.883 3.117 10 H -0.206 1.206 11 H -0.202 1.202 12 H -0.177 1.177 13 N -0.339 5.339 14 C 0.374 3.626 15 O -0.459 6.459 16 C -0.264 4.264 17 C 0.009 3.991 18 C -0.155 4.155 19 N -0.091 5.091 20 H 0.287 0.713 21 C -0.169 4.169 22 C 0.410 3.590 23 O -0.423 6.423 24 O -0.321 6.321 25 C -0.048 4.048 26 C -0.151 4.151 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.234 0.766 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.301 0.699 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.268 4.162 -15.328 22.032 hybrid contribution 0.724 1.021 -2.362 2.674 sum -14.544 5.183 -17.691 23.481 Atomic orbital electron populations 1.21808 0.95366 1.00497 1.01607 1.22098 0.95420 0.97961 1.01070 1.18767 0.93490 0.89790 0.83048 0.96334 1.22140 0.91490 1.48691 1.03920 0.94204 1.26610 0.96713 0.91276 1.04791 1.70958 1.14988 1.38934 1.30064 0.83813 0.75968 0.78244 0.73707 1.20604 1.20241 1.17690 1.46139 1.15036 1.55682 1.17062 1.17641 0.81461 0.77029 0.86451 1.90724 1.51862 1.60889 1.42394 1.19335 1.15507 0.94823 0.96700 1.21022 0.97768 0.93384 0.86938 1.20723 1.03493 0.85531 1.05787 1.41345 1.45472 1.06021 1.16281 0.71338 1.18439 1.16421 0.85998 0.96040 1.19222 0.73918 0.86131 0.79727 1.90939 1.45587 1.35656 1.70167 1.84492 1.75202 1.44676 1.27748 1.19735 0.98280 0.93752 0.93016 1.20397 1.00479 0.96947 0.97319 0.92631 0.92213 0.94577 0.92442 0.93214 0.92928 0.76620 0.88441 0.86959 0.90427 0.69885 0.90715 0.89611 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 8.53 71.98 0.61 -4.47 16 2 C -0.13 -5.43 5.37 30.60 0.16 -5.27 16 3 C 0.25 12.07 1.84 44.25 0.08 12.15 16 4 H 0.02 0.98 6.12 -2.39 -0.01 0.97 16 5 C -0.62 -34.13 8.92 25.60 0.23 -33.90 16 6 H 0.04 2.31 7.96 -2.91 -0.02 2.29 16 7 C 0.01 0.51 5.15 84.66 0.44 0.95 16 8 N -0.92 -54.90 13.70 21.45 0.29 -54.60 16 9 Si 1.06 50.64 26.56 68.60 1.82 52.46 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.25 -11.14 6.34 99.48 0.63 -10.51 16 13 N -0.69 -28.22 5.03 -449.40 -2.26 -30.48 16 14 C 0.59 22.87 5.59 86.66 0.48 23.35 16 15 O -0.58 -26.18 14.25 -4.06 -0.06 -26.24 16 16 C -0.25 -7.98 5.89 -20.12 -0.12 -8.10 16 17 C 0.13 2.96 7.20 42.19 0.30 3.26 16 18 C -0.10 -1.54 10.24 71.24 0.73 -0.81 16 19 N -0.49 -8.68 6.01 -171.72 -1.03 -9.71 16 20 H 0.44 4.22 8.96 -92.71 -0.83 3.39 16 21 C -0.06 -1.44 7.02 39.97 0.28 -1.16 16 22 C 0.56 12.08 8.31 70.01 0.58 12.66 16 23 O -0.53 -14.62 15.48 19.49 0.30 -14.32 16 24 O -0.51 -6.07 13.44 -57.84 -0.78 -6.85 16 25 C -0.04 -1.21 6.21 -19.54 -0.12 -1.33 16 26 C -0.09 -2.98 9.63 71.24 0.69 -2.29 16 27 H 0.05 2.01 5.45 -2.39 -0.01 2.00 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.04 1.45 7.89 -2.39 -0.02 1.44 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.05 2.25 5.77 -2.39 -0.01 2.24 16 32 H 0.26 15.65 8.73 -92.71 -0.81 14.85 16 33 H 0.40 15.15 8.51 -92.70 -0.79 14.36 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.53 7.75 -2.39 -0.02 1.51 16 37 H 0.44 1.27 9.11 -74.06 -0.67 0.60 16 38 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.09 2.58 6.41 -2.39 -0.02 2.57 16 40 H 0.05 1.82 8.05 -2.39 -0.02 1.80 16 Total: -1.00 -74.58 336.35 1.35 -73.23 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -1.29 Total: 21.46 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 4.35 Total: -4.94 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -3.00 Total: -94.79 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -0.53 Total: -47.41 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 1.82 Total: 52.46 kcal Total: -74.58 1.35 -73.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.516 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds