Wall clock time and date at job start Tue Mar 31 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35410 * 116.99874 * 2 1 4 4 N 1.32204 * 119.82653 * 0.29197 * 3 2 1 5 5 C 1.32548 * 121.56439 * 180.29054 * 4 3 2 6 6 N 1.38402 * 119.47780 * 179.72425 * 5 4 3 7 7 C 1.46501 * 120.00374 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47459 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47338 * 299.99970 * 8 7 6 10 10 C 1.53002 * 109.47063 * 60.00112 * 8 7 6 11 11 C 1.50700 * 109.47160 * 179.97438 * 8 7 6 12 12 H 1.08003 * 119.99930 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00176 * 180.02562 * 11 8 7 14 14 N 1.31507 * 119.99699 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 119.99998 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47229 * 90.00065 * 15 13 11 17 17 H 1.48502 * 109.46987 * 209.99566 * 15 13 11 18 18 H 1.48494 * 109.47275 * 329.99460 * 15 13 11 19 19 C 1.39444 * 121.04492 * 359.69527 * 5 4 3 20 20 C 1.36808 * 119.53792 * 0.02562 * 19 5 4 21 21 C 1.40381 * 118.54643 * 359.97438 * 20 19 5 22 22 C 1.47062 * 120.52126 * 180.02562 * 21 20 19 23 23 O 1.21549 * 120.00418 * 179.97438 * 22 21 20 24 24 O 1.34801 * 120.00004 * 359.97438 * 22 21 20 25 25 H 1.09007 * 109.47088 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47199 * 300.00054 * 1 2 3 27 27 H 1.09003 * 109.47003 * 60.00109 * 1 2 3 28 28 H 0.97001 * 120.00009 * 359.97438 * 6 5 4 29 29 H 1.09005 * 109.47268 * 300.00088 * 7 6 5 30 30 H 1.09004 * 109.46903 * 59.99643 * 7 6 5 31 31 H 1.09002 * 109.47209 * 59.99988 * 9 8 7 32 32 H 1.09003 * 109.47479 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.47634 * 300.00221 * 9 8 7 34 34 H 1.09005 * 109.46724 * 60.00030 * 10 8 7 35 35 H 1.09000 * 109.47473 * 179.97438 * 10 8 7 36 36 H 1.08994 * 109.47294 * 300.00256 * 10 8 7 37 37 H 0.97004 * 120.00106 * 179.97438 * 14 13 11 38 38 H 1.07998 * 120.23273 * 180.02562 * 19 5 4 39 39 H 1.07995 * 120.72479 * 179.97438 * 20 19 5 40 40 H 0.96700 * 117.00244 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2065 0.0000 4 7 1.3203 2.3131 0.0058 5 6 1.8859 3.5118 0.0003 6 7 1.0868 4.6419 0.0010 7 6 1.6998 5.9725 -0.0045 8 6 0.6031 7.0393 -0.0031 9 6 -0.2699 6.8749 -1.2486 10 6 -0.2608 6.8809 1.2498 11 6 1.2337 8.4080 -0.0081 12 1 2.3092 8.5070 -0.0123 13 6 0.4377 9.5338 -0.0073 14 7 -0.8718 9.4131 -0.0026 15 14 1.2194 11.2303 -0.0142 16 1 1.4208 11.6769 -1.4161 17 1 0.3281 12.1889 0.6873 18 1 2.5306 11.1741 0.6806 19 6 3.2732 3.6524 -0.0056 20 6 4.0642 2.5361 -0.0062 21 6 3.4460 1.2758 -0.0003 22 6 4.2544 0.0473 -0.0001 23 8 3.7093 -1.0390 0.0055 24 8 5.6001 0.1261 -0.0062 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.1209 4.5529 0.0052 29 1 2.3222 6.0895 0.8827 30 1 2.3149 6.0854 -0.8972 31 1 -0.7260 5.8849 -1.2446 32 1 -1.0515 7.6346 -1.2474 33 1 0.3455 6.9876 -2.1412 34 1 0.3613 6.9981 2.1372 35 1 -1.0418 7.6412 1.2511 36 1 -0.7168 5.8910 1.2539 37 1 -1.4319 10.2052 -0.0017 38 1 3.7202 4.6355 -0.0096 39 1 5.1407 2.6227 -0.0111 40 1 6.0887 -0.7084 -0.0063 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599731460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:04 Heat of formation + Delta-G solvation = -92.691409 kcal Electronic energy + Delta-G solvation = -23555.708024 eV Core-core repulsion = 19949.962178 eV Total energy + Delta-G solvation = -3605.745846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.85105 -39.44619 -38.39774 -36.83046 -35.82650 -34.12419 -32.45776 -31.22145 -29.51864 -27.16694 -25.97127 -25.83935 -25.23071 -23.48957 -22.91423 -21.36772 -18.99295 -18.21370 -18.06834 -17.35434 -16.88523 -16.14129 -16.07554 -15.42160 -15.20658 -14.88048 -14.49263 -14.30490 -14.00021 -13.57625 -13.28783 -13.05858 -12.88963 -12.59276 -12.24358 -11.75561 -11.74882 -11.43140 -11.31500 -11.24508 -10.93721 -10.78814 -10.53062 -10.42555 -10.28897 -10.13802 -9.74494 -9.72992 -9.47823 -9.06749 -8.93034 -8.49627 -7.53975 -6.13100 -4.24798 0.94172 1.49662 2.78643 2.95486 3.20702 3.21129 3.28661 3.30212 3.46522 3.97000 4.30116 4.67584 5.02060 5.08931 5.14019 5.22837 5.30893 5.34731 5.55910 5.66020 5.88005 6.00654 6.01743 6.19081 6.27595 6.33072 6.58423 6.58841 6.72711 6.79917 6.87565 7.08108 7.19476 7.26695 7.42991 7.57441 7.76539 7.88345 7.99085 8.08802 8.16384 8.26593 8.75262 9.41999 10.88277 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.027880 B = 0.003330 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.053416 B = 8407.221372 C = 9214.907878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.278 6.278 3 C 0.432 3.568 4 N -0.613 5.613 5 C 0.477 3.523 6 N -0.685 5.685 7 C 0.128 3.872 8 C 0.059 3.941 9 C -0.133 4.133 10 C -0.133 4.133 11 C -0.511 4.511 12 H 0.058 0.942 13 C 0.068 3.932 14 N -0.883 5.883 15 Si 0.895 3.105 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.284 4.284 20 C 0.049 3.951 21 C -0.289 4.289 22 C 0.538 3.462 23 O -0.515 6.515 24 O -0.521 6.521 25 H 0.095 0.905 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.408 0.592 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.007 0.993 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.087 0.913 36 H 0.007 0.993 37 H 0.261 0.739 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.427 -13.309 -0.018 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.182 6.182 3 C 0.248 3.752 4 N -0.349 5.349 5 C 0.235 3.765 6 N -0.310 5.310 7 C 0.005 3.995 8 C 0.058 3.942 9 C -0.190 4.190 10 C -0.190 4.190 11 C -0.549 4.549 12 H 0.077 0.923 13 C -0.134 4.134 14 N -0.521 5.521 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.308 4.308 20 C 0.025 3.975 21 C -0.297 4.297 22 C 0.384 3.616 23 O -0.405 6.405 24 O -0.333 6.333 25 H 0.113 0.887 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.246 0.754 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.026 0.974 32 H 0.105 0.895 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.105 0.895 36 H 0.026 0.974 37 H 0.072 0.928 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 5.162 -13.182 -0.006 14.157 hybrid contribution 0.865 0.598 -0.016 1.052 sum 6.027 -12.584 -0.022 13.953 Atomic orbital electron populations 1.22925 0.77534 1.02881 1.02668 1.86471 1.22484 1.23525 1.85702 1.19322 0.87294 0.84182 0.84360 1.66923 1.39505 0.97310 1.31188 1.18335 0.88581 0.85411 0.84187 1.45359 1.09399 1.03394 1.72883 1.22048 0.98002 0.79006 1.00425 1.18340 0.90901 0.91881 0.93089 1.21846 1.01255 0.98523 0.97413 1.21847 1.01268 0.98528 0.97399 1.20921 0.92923 0.89438 1.51659 0.92330 1.24881 0.94820 0.99129 0.94587 1.69798 1.03134 1.29228 1.49961 0.86551 0.79235 0.83812 0.78156 1.20656 1.21220 1.19858 1.21080 0.92110 1.00742 1.16896 1.21075 1.00417 0.89501 0.86541 1.18429 0.89605 0.92450 1.29197 1.20284 0.80056 0.88907 0.72403 1.90905 1.72666 1.29793 1.47156 1.84568 1.20436 1.41558 1.86754 0.88682 0.92108 0.92133 0.75442 0.92134 0.92143 0.97375 0.89474 0.95338 0.95335 0.89467 0.97372 0.92842 0.83856 0.83407 0.73472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.28 -4.33 8.56 -39.77 -0.34 -4.67 16 3 C 0.43 6.91 7.51 -16.58 -0.12 6.78 16 4 N -0.61 -9.91 9.24 -12.20 -0.11 -10.02 16 5 C 0.48 7.59 7.63 -155.36 -1.19 6.40 16 6 N -0.69 -11.30 5.11 -60.47 -0.31 -11.61 16 7 C 0.13 2.29 3.70 -4.04 -0.01 2.27 16 8 C 0.06 1.25 0.50 -155.67 -0.08 1.17 16 9 C -0.13 -2.85 8.08 37.15 0.30 -2.55 16 10 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 11 C -0.51 -12.36 8.01 -34.44 -0.28 -12.63 16 12 H 0.06 1.40 7.74 -52.48 -0.41 0.99 16 13 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 14 N -0.88 -22.63 9.35 55.43 0.52 -22.11 16 15 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 19 C -0.28 -3.98 9.24 -39.65 -0.37 -4.35 16 20 C 0.05 0.64 9.67 -39.29 -0.38 0.26 16 21 C -0.29 -4.27 5.90 -104.70 -0.62 -4.89 16 22 C 0.54 7.60 8.26 34.31 0.28 7.89 16 23 O -0.52 -8.66 15.97 -26.62 -0.42 -9.08 16 24 O -0.52 -5.33 12.74 -40.77 -0.52 -5.84 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 28 H 0.41 6.85 6.28 -40.82 -0.26 6.60 16 29 H 0.06 1.06 7.90 -51.93 -0.41 0.65 16 30 H 0.06 1.06 7.90 -51.93 -0.41 0.65 16 31 H 0.01 0.14 6.86 -51.93 -0.36 -0.21 16 32 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 36 H 0.01 0.14 6.86 -51.93 -0.36 -0.21 16 37 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 38 H 0.14 1.85 6.64 -52.49 -0.35 1.50 16 39 H 0.15 1.50 7.69 -52.49 -0.40 1.10 16 40 H 0.41 2.27 9.11 45.56 0.42 2.69 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -28.46 332.02 -6.82 -35.27 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -4.41 Total: 7.55 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.20 Total: 0.86 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.10 Total: -43.74 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.28 Total: -19.59 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.46 -6.82 -35.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599731460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.418 kcal (2) G-P(sol) polarization free energy of solvation -28.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds