Wall clock time and date at job start Tue Mar 31 2020 06:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35410 * 116.99874 * 2 1 4 4 N 1.32204 * 119.82653 * 0.29197 * 3 2 1 5 5 C 1.32548 * 121.56439 * 180.29054 * 4 3 2 6 6 N 1.38402 * 119.47780 * 179.72425 * 5 4 3 7 7 C 1.46501 * 120.00374 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47459 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47338 * 299.99970 * 8 7 6 10 10 C 1.53002 * 109.47063 * 60.00112 * 8 7 6 11 11 C 1.50700 * 109.47160 * 179.97438 * 8 7 6 12 12 H 1.08003 * 119.99930 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00176 * 180.02562 * 11 8 7 14 14 N 1.31507 * 119.99699 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 119.99998 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47229 * 90.00065 * 15 13 11 17 17 H 1.48502 * 109.46987 * 209.99566 * 15 13 11 18 18 H 1.48494 * 109.47275 * 329.99460 * 15 13 11 19 19 C 1.39444 * 121.04492 * 359.69527 * 5 4 3 20 20 C 1.36808 * 119.53792 * 0.02562 * 19 5 4 21 21 C 1.40381 * 118.54643 * 359.97438 * 20 19 5 22 22 C 1.47062 * 120.52126 * 180.02562 * 21 20 19 23 23 O 1.21549 * 120.00418 * 179.97438 * 22 21 20 24 24 O 1.34801 * 120.00004 * 359.97438 * 22 21 20 25 25 H 1.09007 * 109.47088 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47199 * 300.00054 * 1 2 3 27 27 H 1.09003 * 109.47003 * 60.00109 * 1 2 3 28 28 H 0.97001 * 120.00009 * 359.97438 * 6 5 4 29 29 H 1.09005 * 109.47268 * 300.00088 * 7 6 5 30 30 H 1.09004 * 109.46903 * 59.99643 * 7 6 5 31 31 H 1.09002 * 109.47209 * 59.99988 * 9 8 7 32 32 H 1.09003 * 109.47479 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.47634 * 300.00221 * 9 8 7 34 34 H 1.09005 * 109.46724 * 60.00030 * 10 8 7 35 35 H 1.09000 * 109.47473 * 179.97438 * 10 8 7 36 36 H 1.08994 * 109.47294 * 300.00256 * 10 8 7 37 37 H 0.97004 * 120.00106 * 179.97438 * 14 13 11 38 38 H 1.07998 * 120.23273 * 180.02562 * 19 5 4 39 39 H 1.07995 * 120.72479 * 179.97438 * 20 19 5 40 40 H 0.96700 * 117.00244 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2065 0.0000 4 7 1.3203 2.3131 0.0058 5 6 1.8859 3.5118 0.0003 6 7 1.0868 4.6419 0.0010 7 6 1.6998 5.9725 -0.0045 8 6 0.6031 7.0393 -0.0031 9 6 -0.2699 6.8749 -1.2486 10 6 -0.2608 6.8809 1.2498 11 6 1.2337 8.4080 -0.0081 12 1 2.3092 8.5070 -0.0123 13 6 0.4377 9.5338 -0.0073 14 7 -0.8718 9.4131 -0.0026 15 14 1.2194 11.2303 -0.0142 16 1 1.4208 11.6769 -1.4161 17 1 0.3281 12.1889 0.6873 18 1 2.5306 11.1741 0.6806 19 6 3.2732 3.6524 -0.0056 20 6 4.0642 2.5361 -0.0062 21 6 3.4460 1.2758 -0.0003 22 6 4.2544 0.0473 -0.0001 23 8 3.7093 -1.0390 0.0055 24 8 5.6001 0.1261 -0.0062 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.1209 4.5529 0.0052 29 1 2.3222 6.0895 0.8827 30 1 2.3149 6.0854 -0.8972 31 1 -0.7260 5.8849 -1.2446 32 1 -1.0515 7.6346 -1.2474 33 1 0.3455 6.9876 -2.1412 34 1 0.3613 6.9981 2.1372 35 1 -1.0418 7.6412 1.2511 36 1 -0.7168 5.8910 1.2539 37 1 -1.4319 10.2052 -0.0017 38 1 3.7202 4.6355 -0.0096 39 1 5.1407 2.6227 -0.0111 40 1 6.0887 -0.7084 -0.0063 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599731460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:03 Heat of formation + Delta-G solvation = -110.906898 kcal Electronic energy + Delta-G solvation = -23556.497907 eV Core-core repulsion = 19949.962178 eV Total energy + Delta-G solvation = -3606.535729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.96765 -40.51200 -39.59315 -38.27367 -36.81679 -35.56920 -33.70752 -32.82224 -30.71225 -28.16759 -27.57815 -27.52869 -26.88425 -24.69897 -24.02085 -22.48388 -20.58496 -19.38795 -19.17446 -18.52958 -17.94804 -17.72713 -17.24022 -16.80502 -16.41839 -16.24132 -15.84004 -15.61037 -15.02463 -14.84654 -14.74751 -14.35117 -14.15094 -14.02100 -13.47214 -13.28994 -13.08597 -12.80839 -12.72252 -12.55619 -12.45336 -12.36855 -12.14187 -12.10249 -11.54890 -11.50952 -11.21717 -11.21465 -10.82804 -10.67746 -10.39160 -10.24121 -8.73904 -8.00057 -6.16342 -0.18901 0.40076 1.46142 1.49975 1.56579 1.68892 1.84903 2.21659 2.32037 2.50390 2.83942 3.25060 3.56650 3.93802 3.96642 4.23900 4.35457 4.41284 4.42267 4.53588 4.57985 4.70450 4.74666 4.93936 4.96159 5.05225 5.11902 5.14951 5.19552 5.25704 5.46322 5.65714 5.69779 5.73043 5.90650 6.08393 6.12304 6.21610 6.42464 6.53722 6.89070 6.97331 7.17250 7.52475 8.99058 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.027880 B = 0.003330 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.053416 B = 8407.221372 C = 9214.907878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.294 6.294 3 C 0.414 3.586 4 N -0.623 5.623 5 C 0.463 3.537 6 N -0.690 5.690 7 C 0.145 3.855 8 C 0.052 3.948 9 C -0.123 4.123 10 C -0.123 4.123 11 C -0.522 4.522 12 H 0.060 0.940 13 C 0.024 3.976 14 N -0.904 5.904 15 Si 0.946 3.054 16 H -0.281 1.281 17 H -0.291 1.291 18 H -0.268 1.268 19 C -0.285 4.285 20 C 0.064 3.936 21 C -0.299 4.299 22 C 0.544 3.456 23 O -0.548 6.548 24 O -0.507 6.507 25 H 0.121 0.879 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.404 0.596 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.058 0.942 36 H 0.025 0.975 37 H 0.258 0.742 38 H 0.157 0.843 39 H 0.181 0.819 40 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.321 -14.049 -0.019 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.199 6.199 3 C 0.231 3.769 4 N -0.359 5.359 5 C 0.223 3.777 6 N -0.316 5.316 7 C 0.022 3.978 8 C 0.051 3.949 9 C -0.180 4.180 10 C -0.181 4.181 11 C -0.560 4.560 12 H 0.078 0.922 13 C -0.175 4.175 14 N -0.543 5.543 15 Si 0.773 3.227 16 H -0.207 1.207 17 H -0.217 1.217 18 H -0.193 1.193 19 C -0.309 4.309 20 C 0.039 3.961 21 C -0.306 4.306 22 C 0.391 3.609 23 O -0.440 6.440 24 O -0.320 6.320 25 H 0.139 0.861 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.241 0.759 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.067 0.933 38 H 0.175 0.825 39 H 0.198 0.802 40 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 7.098 -13.951 -0.007 15.653 hybrid contribution 0.329 0.728 -0.017 0.799 sum 7.426 -13.223 -0.024 15.166 Atomic orbital electron populations 1.23115 0.76046 1.04592 1.02457 1.86459 1.24102 1.23574 1.85727 1.19601 0.88072 0.84205 0.85017 1.66839 1.40137 0.97560 1.31386 1.18515 0.89302 0.85077 0.84822 1.45123 1.09147 1.03097 1.74236 1.21686 0.96558 0.78697 1.00889 1.18335 0.91768 0.92065 0.92717 1.21689 1.00408 0.98540 0.97410 1.21690 1.00416 0.98542 0.97403 1.21295 0.93102 0.90877 1.50738 0.92214 1.25506 0.95224 1.01928 0.94859 1.69939 1.03956 1.29487 1.50924 0.85744 0.78546 0.80572 0.77848 1.20713 1.21729 1.19257 1.21272 0.91350 1.01811 1.16496 1.21390 1.01822 0.88190 0.84670 1.18742 0.89523 0.93657 1.28684 1.20169 0.81057 0.88084 0.71639 1.90895 1.73604 1.30805 1.48697 1.84502 1.18490 1.43216 1.85824 0.86077 0.92293 0.92303 0.75859 0.91676 0.91665 0.95568 0.92339 0.95690 0.95681 0.92334 0.95568 0.93290 0.82519 0.80199 0.70865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.38 113.37 1.18 1.92 16 2 O -0.29 -8.98 8.56 -66.15 -0.57 -9.55 16 3 C 0.41 12.84 7.51 85.16 0.64 13.48 16 4 N -0.62 -19.56 9.24 -305.56 -2.82 -22.38 16 5 C 0.46 14.04 7.63 133.30 1.02 15.05 16 6 N -0.69 -21.83 5.11 -345.21 -1.76 -23.59 16 7 C 0.14 4.95 3.70 86.38 0.32 5.27 16 8 C 0.05 2.18 0.50 -52.93 -0.03 2.15 16 9 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 10 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 11 C -0.52 -24.93 8.01 25.60 0.21 -24.73 16 12 H 0.06 2.78 7.74 -2.91 -0.02 2.76 16 13 C 0.02 1.21 5.15 84.66 0.44 1.65 16 14 N -0.90 -46.98 9.35 21.45 0.20 -46.78 16 15 Si 0.95 40.19 29.54 68.60 2.03 42.21 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 17 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 19 C -0.28 -7.29 9.24 22.23 0.21 -7.08 16 20 C 0.06 1.45 9.67 22.46 0.22 1.66 16 21 C -0.30 -8.24 5.90 -19.91 -0.12 -8.36 16 22 C 0.54 14.24 8.26 70.14 0.58 14.82 16 23 O -0.55 -17.71 15.97 26.67 0.43 -17.29 16 24 O -0.51 -8.68 12.74 -57.12 -0.73 -9.41 16 25 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 26 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 27 H 0.06 1.35 8.11 -2.39 -0.02 1.33 16 28 H 0.40 13.18 6.28 -92.71 -0.58 12.60 16 29 H 0.07 2.16 7.90 -2.38 -0.02 2.14 16 30 H 0.07 2.16 7.90 -2.38 -0.02 2.14 16 31 H 0.03 0.98 6.86 -2.39 -0.02 0.96 16 32 H 0.06 2.84 6.07 -2.39 -0.01 2.83 16 33 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.02 1.03 8.14 -2.38 -0.02 1.02 16 35 H 0.06 2.85 6.07 -2.39 -0.01 2.83 16 36 H 0.03 0.98 6.86 -2.39 -0.02 0.96 16 37 H 0.26 13.05 8.31 -92.71 -0.77 12.28 16 38 H 0.16 3.56 6.64 -2.91 -0.02 3.55 16 39 H 0.18 2.87 7.69 -2.91 -0.02 2.85 16 40 H 0.43 3.35 9.11 -74.06 -0.67 2.67 16 Total: -1.00 -60.65 332.02 2.42 -58.23 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -0.17 Total: 22.01 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 5.81 Total: 6.53 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -4.39 Total: -92.75 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.87 Total: -36.24 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -60.65 2.42 -58.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599731460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.674 kcal (2) G-P(sol) polarization free energy of solvation -60.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds