Wall clock time and date at job start Tue Mar 31 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.47205 * 109.46970 * 2 1 4 4 N 2.60806 * 109.47014 * 359.97438 * 2 1 3 5 5 C 1.52996 * 109.47347 * 119.99327 * 2 1 3 6 6 C 1.50696 * 109.47543 * 300.00325 * 5 2 1 7 7 O 1.20830 * 119.99782 * 0.02562 * 6 5 2 8 8 O 1.34225 * 120.00235 * 179.97438 * 6 5 2 9 9 C 1.50696 * 109.47064 * 239.99945 * 2 1 3 10 10 O 1.21279 * 119.99803 * 246.91429 * 9 2 1 11 11 N 1.34776 * 120.00322 * 66.92340 * 9 2 1 12 12 C 1.46922 * 120.63429 * 174.82960 * 11 9 2 13 13 C 1.53192 * 108.77689 * 233.62463 * 12 11 9 14 14 C 1.53041 * 109.31331 * 305.36586 * 13 12 11 15 15 C 1.53039 * 109.53689 * 61.36086 * 14 13 12 16 16 H 1.09000 * 109.52488 * 58.60433 * 15 14 13 17 17 C 1.50705 * 109.49336 * 178.68607 * 15 14 13 18 18 H 1.07997 * 120.00053 * 119.84554 * 17 15 14 19 19 C 1.37873 * 119.99621 * 299.83658 * 17 15 14 20 20 N 1.31520 * 119.99989 * 180.02562 * 19 17 15 21 21 Si 1.86793 * 120.00498 * 0.02562 * 19 17 15 22 22 H 1.48504 * 109.47483 * 89.99825 * 21 19 17 23 23 H 1.48506 * 109.47369 * 210.00072 * 21 19 17 24 24 H 1.48501 * 109.46944 * 329.99581 * 21 19 17 25 25 C 1.46933 * 120.62804 * 354.84417 * 11 9 2 26 26 H 1.08998 * 109.46615 * 186.25969 * 1 2 3 27 27 H 1.09002 * 109.47262 * 306.25766 * 1 2 3 28 28 H 1.08997 * 109.46887 * 66.25474 * 1 2 3 29 29 H 1.09003 * 109.46755 * 60.00519 * 5 2 1 30 30 H 1.09000 * 109.47476 * 179.97438 * 5 2 1 31 31 H 0.96708 * 117.00123 * 180.02562 * 8 6 5 32 32 H 1.08996 * 109.58885 * 113.83471 * 12 11 9 33 33 H 1.09000 * 109.70208 * 353.48355 * 12 11 9 34 34 H 1.08999 * 109.49772 * 185.40811 * 13 12 11 35 35 H 1.09005 * 109.51805 * 65.33253 * 13 12 11 36 36 H 1.09005 * 109.45674 * 301.34074 * 14 13 12 37 37 H 1.08991 * 109.45863 * 181.38320 * 14 13 12 38 38 H 0.96995 * 120.00502 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.58425 * 6.58605 * 25 11 9 40 40 H 1.08998 * 109.58535 * 246.16250 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3879 0.0000 4 7 2.3993 2.4589 -0.0011 5 6 2.0401 -0.7211 1.2493 6 6 1.5378 -0.0107 2.4797 7 8 0.8426 0.9714 2.3688 8 8 1.8617 -0.4694 3.6988 9 6 2.0323 -0.7104 -1.2304 10 8 2.6227 -1.7644 -1.1235 11 7 1.8257 -0.1745 -2.4496 12 6 2.4058 -0.7951 -3.6484 13 6 3.2050 0.2639 -4.4143 14 6 2.3044 1.4672 -4.7027 15 6 1.8310 2.0802 -3.3828 16 1 2.6949 2.3822 -2.7908 17 6 0.9705 3.2842 -3.6675 18 1 -0.0546 3.3077 -3.3284 19 6 1.4921 4.3558 -4.3607 20 7 0.7413 5.4068 -4.6088 21 14 3.2649 4.3151 -4.9477 22 1 3.3222 3.7249 -6.3092 23 1 3.8062 5.6975 -4.9842 24 1 4.0759 3.4905 -4.0161 25 6 1.0161 1.0418 -2.6052 26 1 -0.3632 -1.0216 0.1121 27 1 -0.3634 0.6078 0.8287 28 1 -0.3633 0.4138 -0.9406 29 1 1.6768 -1.7488 1.2493 30 1 3.1301 -0.7215 1.2491 31 1 1.5156 0.0194 4.4581 32 1 1.6077 -1.1803 -4.2830 33 1 3.0666 -1.6113 -3.3564 34 1 3.5606 -0.1580 -5.3542 35 1 4.0567 0.5827 -3.8132 36 1 1.4405 1.1433 -5.2832 37 1 2.8636 2.2118 -5.2690 38 1 1.1081 6.1606 -5.0968 39 1 0.7606 1.4388 -1.6228 40 1 0.1048 0.8064 -3.1548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602778724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:24 Heat of formation + Delta-G solvation = -85.210440 kcal Electronic energy + Delta-G solvation = -24991.150864 eV Core-core repulsion = 21385.729418 eV Total energy + Delta-G solvation = -3605.421447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.22073 -40.05304 -37.45657 -36.99149 -36.09015 -34.17653 -33.44778 -32.03493 -30.68905 -28.71304 -26.03698 -25.22582 -24.26433 -22.11176 -21.41973 -20.68497 -19.43780 -18.27182 -18.10345 -16.77449 -16.46371 -16.30399 -15.94070 -15.46009 -14.85322 -14.64761 -14.42321 -13.85872 -13.65869 -13.50878 -13.34298 -13.06126 -12.73653 -12.61068 -12.46518 -12.44603 -12.25853 -12.16698 -11.67187 -11.54000 -11.48879 -11.35139 -11.19578 -10.75730 -10.61732 -10.35898 -10.25063 -9.96492 -9.69490 -9.40084 -9.09943 -8.60539 -8.31233 -6.13688 -4.14250 1.97618 2.37209 2.57285 2.89052 3.04554 3.21518 3.31326 3.35474 3.36610 3.83956 4.25641 4.35903 4.48494 4.64552 5.09154 5.13722 5.18055 5.32104 5.33632 5.35735 5.45293 5.54916 5.65410 5.71737 5.81745 5.94688 6.02531 6.09088 6.21513 6.32958 6.37120 6.50283 6.61441 6.77870 6.95070 7.35692 7.47277 7.65784 7.68234 7.74711 8.09941 8.39825 8.87226 9.48078 10.99147 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019134 B = 0.005617 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.008024 B = 4983.821553 C = 5797.503764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.039 3.961 3 C 0.194 3.806 4 N -0.374 5.374 5 C -0.090 4.090 6 C 0.477 3.523 7 O -0.500 6.500 8 O -0.514 6.514 9 C 0.532 3.468 10 O -0.541 6.541 11 N -0.595 5.595 12 C 0.117 3.883 13 C -0.140 4.140 14 C -0.124 4.124 15 C 0.005 3.995 16 H 0.032 0.968 17 C -0.514 4.514 18 H 0.076 0.924 19 C 0.076 3.924 20 N -0.896 5.896 21 Si 0.885 3.115 22 H -0.278 1.278 23 H -0.297 1.297 24 H -0.267 1.267 25 C 0.106 3.894 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.121 0.879 31 H 0.412 0.588 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.265 0.735 39 H 0.085 0.915 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.085 -15.786 10.041 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.032 3.968 3 C -0.125 4.125 4 N -0.049 5.049 5 C -0.129 4.129 6 C 0.319 3.681 7 O -0.387 6.387 8 O -0.326 6.326 9 C 0.316 3.684 10 O -0.419 6.419 11 N -0.326 5.326 12 C -0.005 4.005 13 C -0.178 4.178 14 C -0.161 4.161 15 C -0.014 4.014 16 H 0.050 0.950 17 C -0.552 4.552 18 H 0.094 0.906 19 C -0.126 4.126 20 N -0.533 5.533 21 Si 0.715 3.285 22 H -0.205 1.205 23 H -0.224 1.224 24 H -0.192 1.192 25 C -0.016 4.016 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.153 0.847 30 H 0.139 0.861 31 H 0.271 0.729 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.916 -14.465 9.619 17.477 hybrid contribution 0.543 0.268 -0.033 0.606 sum 2.459 -14.198 9.587 17.307 Atomic orbital electron populations 1.22436 0.88755 1.04654 1.06622 1.18056 0.99342 0.84850 0.94516 1.27879 0.95278 0.94090 0.95217 1.81299 1.06958 1.10504 1.06102 1.21162 1.04633 1.01031 0.86037 1.23257 0.77350 0.82587 0.84891 1.90752 1.35383 1.25699 1.86874 1.84507 1.72390 1.59007 1.16737 1.19618 0.79735 0.85156 0.83862 1.90686 1.42737 1.22330 1.86166 1.48285 1.50497 1.27988 1.05811 1.21616 0.97650 0.95831 0.85399 1.22021 0.99025 0.97132 0.99615 1.22005 0.98397 0.95379 1.00331 1.19467 0.96386 0.93531 0.92063 0.94972 1.20795 0.99310 0.98641 1.36501 0.90620 1.24925 0.97235 0.95129 0.95346 1.69878 1.36361 1.06509 1.40593 0.86880 0.86095 0.76303 0.79209 1.20498 1.22410 1.19173 1.22367 0.94102 0.83211 1.01899 0.90225 0.88146 0.89554 0.84704 0.86116 0.72900 0.91145 0.89404 0.91421 0.92213 0.91706 0.93079 0.92544 0.89729 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 7.74 37.16 0.29 -1.67 16 2 C 0.04 0.53 0.47 -158.45 -0.07 0.45 16 3 C 0.19 3.37 9.17 -20.76 -0.19 3.18 16 4 N -0.37 -7.73 18.54 42.15 0.78 -6.94 16 5 C -0.09 -0.93 4.17 -27.89 -0.12 -1.04 16 6 C 0.48 5.04 7.77 36.00 0.28 5.32 16 7 O -0.50 -6.86 13.28 -18.75 -0.25 -7.11 16 8 O -0.51 -3.99 13.42 -39.24 -0.53 -4.52 16 9 C 0.53 7.98 6.46 -10.99 -0.07 7.91 16 10 O -0.54 -8.55 15.42 5.56 0.09 -8.47 16 11 N -0.60 -9.58 2.96 -172.77 -0.51 -10.09 16 12 C 0.12 1.72 6.41 -3.71 -0.02 1.69 16 13 C -0.14 -2.28 6.08 -26.61 -0.16 -2.45 16 14 C -0.12 -2.50 4.66 -26.69 -0.12 -2.62 16 15 C 0.01 0.11 1.84 -91.65 -0.17 -0.06 16 16 H 0.03 0.80 7.20 -51.93 -0.37 0.42 16 17 C -0.51 -13.90 9.14 -34.44 -0.31 -14.22 16 18 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 19 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 20 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 21 Si 0.88 22.12 24.39 -169.99 -4.15 17.98 16 22 H -0.28 -6.64 6.86 56.52 0.39 -6.25 16 23 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.27 -6.56 6.53 56.52 0.37 -6.19 16 25 C 0.11 1.93 3.64 -3.71 -0.01 1.92 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.10 1.25 5.68 -51.93 -0.30 0.95 16 28 H 0.09 1.09 5.29 -51.93 -0.27 0.81 16 29 H 0.14 1.06 8.02 -51.93 -0.42 0.65 16 30 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.41 1.56 9.10 45.56 0.41 1.98 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.23 7.05 -51.93 -0.37 0.86 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.08 1.56 3.25 -51.93 -0.17 1.39 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 317.61 15.07 4.79 4.79 Total: -1.00 -34.36 317.61 -4.00 -38.36 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.21 Total: 1.86 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -0.79 Total: 0.50 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 1.04 Total: -43.40 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.69 Total: -20.09 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.15 Total: 17.98 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.36 -4.00 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602778724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.848 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds