Wall clock time and date at job start Tue Mar 31 2020 06:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.47205 * 109.46970 * 2 1 4 4 N 2.60806 * 109.47014 * 359.97438 * 2 1 3 5 5 C 1.52996 * 109.47347 * 119.99327 * 2 1 3 6 6 C 1.50696 * 109.47543 * 300.00325 * 5 2 1 7 7 O 1.20830 * 119.99782 * 0.02562 * 6 5 2 8 8 O 1.34225 * 120.00235 * 179.97438 * 6 5 2 9 9 C 1.50696 * 109.47064 * 239.99945 * 2 1 3 10 10 O 1.21279 * 119.99803 * 246.91429 * 9 2 1 11 11 N 1.34776 * 120.00322 * 66.92340 * 9 2 1 12 12 C 1.46922 * 120.63429 * 174.82960 * 11 9 2 13 13 C 1.53192 * 108.77689 * 233.62463 * 12 11 9 14 14 C 1.53041 * 109.31331 * 305.36586 * 13 12 11 15 15 C 1.53039 * 109.53689 * 61.36086 * 14 13 12 16 16 H 1.09000 * 109.52488 * 58.60433 * 15 14 13 17 17 C 1.50705 * 109.49336 * 178.68607 * 15 14 13 18 18 H 1.07997 * 120.00053 * 119.84554 * 17 15 14 19 19 C 1.37873 * 119.99621 * 299.83658 * 17 15 14 20 20 N 1.31520 * 119.99989 * 180.02562 * 19 17 15 21 21 Si 1.86793 * 120.00498 * 0.02562 * 19 17 15 22 22 H 1.48504 * 109.47483 * 89.99825 * 21 19 17 23 23 H 1.48506 * 109.47369 * 210.00072 * 21 19 17 24 24 H 1.48501 * 109.46944 * 329.99581 * 21 19 17 25 25 C 1.46933 * 120.62804 * 354.84417 * 11 9 2 26 26 H 1.08998 * 109.46615 * 186.25969 * 1 2 3 27 27 H 1.09002 * 109.47262 * 306.25766 * 1 2 3 28 28 H 1.08997 * 109.46887 * 66.25474 * 1 2 3 29 29 H 1.09003 * 109.46755 * 60.00519 * 5 2 1 30 30 H 1.09000 * 109.47476 * 179.97438 * 5 2 1 31 31 H 0.96708 * 117.00123 * 180.02562 * 8 6 5 32 32 H 1.08996 * 109.58885 * 113.83471 * 12 11 9 33 33 H 1.09000 * 109.70208 * 353.48355 * 12 11 9 34 34 H 1.08999 * 109.49772 * 185.40811 * 13 12 11 35 35 H 1.09005 * 109.51805 * 65.33253 * 13 12 11 36 36 H 1.09005 * 109.45674 * 301.34074 * 14 13 12 37 37 H 1.08991 * 109.45863 * 181.38320 * 14 13 12 38 38 H 0.96995 * 120.00502 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.58425 * 6.58605 * 25 11 9 40 40 H 1.08998 * 109.58535 * 246.16250 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3879 0.0000 4 7 2.3993 2.4589 -0.0011 5 6 2.0401 -0.7211 1.2493 6 6 1.5378 -0.0107 2.4797 7 8 0.8426 0.9714 2.3688 8 8 1.8617 -0.4694 3.6988 9 6 2.0323 -0.7104 -1.2304 10 8 2.6227 -1.7644 -1.1235 11 7 1.8257 -0.1745 -2.4496 12 6 2.4058 -0.7951 -3.6484 13 6 3.2050 0.2639 -4.4143 14 6 2.3044 1.4672 -4.7027 15 6 1.8310 2.0802 -3.3828 16 1 2.6949 2.3822 -2.7908 17 6 0.9705 3.2842 -3.6675 18 1 -0.0546 3.3077 -3.3284 19 6 1.4921 4.3558 -4.3607 20 7 0.7413 5.4068 -4.6088 21 14 3.2649 4.3151 -4.9477 22 1 3.3222 3.7249 -6.3092 23 1 3.8062 5.6975 -4.9842 24 1 4.0759 3.4905 -4.0161 25 6 1.0161 1.0418 -2.6052 26 1 -0.3632 -1.0216 0.1121 27 1 -0.3634 0.6078 0.8287 28 1 -0.3633 0.4138 -0.9406 29 1 1.6768 -1.7488 1.2493 30 1 3.1301 -0.7215 1.2491 31 1 1.5156 0.0194 4.4581 32 1 1.6077 -1.1803 -4.2830 33 1 3.0666 -1.6113 -3.3564 34 1 3.5606 -0.1580 -5.3542 35 1 4.0567 0.5827 -3.8132 36 1 1.4405 1.1433 -5.2832 37 1 2.8636 2.2118 -5.2690 38 1 1.1081 6.1606 -5.0968 39 1 0.7606 1.4388 -1.6228 40 1 0.1048 0.8064 -3.1548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602778724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:23 Heat of formation + Delta-G solvation = -110.952315 kcal Electronic energy + Delta-G solvation = -24992.267116 eV Core-core repulsion = 21385.729418 eV Total energy + Delta-G solvation = -3606.537698 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.29761 -41.04903 -38.82035 -38.18684 -37.02885 -35.38072 -35.23658 -33.60712 -32.32581 -29.63475 -27.28154 -27.05689 -25.46401 -23.38854 -22.50361 -22.16427 -20.78291 -19.47255 -19.05673 -18.69133 -17.56594 -17.33833 -16.85627 -16.79639 -16.44927 -15.95775 -15.75174 -15.26814 -15.09680 -14.93962 -14.65000 -14.50252 -14.02330 -14.00933 -13.74128 -13.68298 -13.45376 -13.17279 -13.05313 -12.94005 -12.77282 -12.66250 -12.37397 -12.34806 -12.02699 -11.94810 -11.59133 -11.52039 -11.31866 -11.01688 -10.87300 -10.65693 -9.65948 -8.34792 -6.37310 1.16002 1.18036 1.20459 1.29629 1.37089 1.54400 1.59704 1.85638 2.22328 2.25971 2.65980 3.01475 3.21245 3.34365 3.66811 3.93774 4.03122 4.10066 4.24113 4.37439 4.39653 4.41495 4.55459 4.61219 4.69344 4.71059 4.75291 4.84497 4.93490 5.04066 5.09110 5.16900 5.30200 5.39633 5.58006 5.66919 5.67566 6.20083 6.24722 6.41345 6.68380 6.88305 6.98827 7.28088 8.81602 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019134 B = 0.005617 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.008024 B = 4983.821553 C = 5797.503764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.037 3.963 3 C 0.219 3.781 4 N -0.444 5.444 5 C -0.089 4.089 6 C 0.485 3.515 7 O -0.538 6.538 8 O -0.504 6.504 9 C 0.538 3.462 10 O -0.540 6.540 11 N -0.600 5.600 12 C 0.116 3.884 13 C -0.133 4.133 14 C -0.124 4.124 15 C 0.005 3.995 16 H 0.007 0.993 17 C -0.509 4.509 18 H 0.043 0.957 19 C 0.020 3.980 20 N -0.944 5.944 21 Si 0.941 3.059 22 H -0.256 1.256 23 H -0.305 1.305 24 H -0.264 1.264 25 C 0.119 3.881 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.169 0.831 30 H 0.128 0.872 31 H 0.430 0.570 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.265 0.735 39 H 0.079 0.921 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 -19.390 10.250 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 C -0.099 4.099 4 N -0.120 5.120 5 C -0.127 4.127 6 C 0.328 3.672 7 O -0.429 6.429 8 O -0.318 6.318 9 C 0.323 3.677 10 O -0.418 6.418 11 N -0.331 5.331 12 C -0.005 4.005 13 C -0.171 4.171 14 C -0.161 4.161 15 C -0.015 4.015 16 H 0.025 0.975 17 C -0.548 4.548 18 H 0.061 0.939 19 C -0.178 4.178 20 N -0.585 5.585 21 Si 0.770 3.230 22 H -0.181 1.181 23 H -0.233 1.233 24 H -0.189 1.189 25 C -0.004 4.004 26 H 0.135 0.865 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.186 0.814 30 H 0.146 0.854 31 H 0.292 0.708 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.765 -18.122 9.855 20.813 hybrid contribution 0.228 1.338 0.021 1.357 sum 2.992 -16.785 9.877 19.703 Atomic orbital electron populations 1.22454 0.87323 1.06781 1.05590 1.18390 1.00455 0.82565 0.95601 1.28675 0.93448 0.94699 0.93098 1.81306 1.09419 1.12775 1.08469 1.21260 1.05073 1.02046 0.84302 1.23255 0.76438 0.81777 0.85707 1.90762 1.37290 1.27352 1.87454 1.84460 1.71915 1.58858 1.16571 1.19683 0.79263 0.85056 0.83711 1.90692 1.42545 1.22408 1.86136 1.48269 1.50681 1.27213 1.06958 1.21783 0.98451 0.95300 0.84974 1.21978 0.97833 0.95907 1.01373 1.21902 0.99373 0.96541 0.98333 1.19365 0.95127 0.93212 0.93804 0.97494 1.21135 0.98511 1.00414 1.34708 0.93855 1.25694 1.01057 0.94968 0.96076 1.70017 1.38331 1.07541 1.42577 0.85963 0.81435 0.75801 0.79833 1.18114 1.23284 1.18918 1.22024 0.93955 0.83292 1.01089 0.86509 0.88933 0.90821 0.81369 0.85414 0.70771 0.88754 0.87950 0.88099 0.93586 0.90804 0.94989 0.92627 0.90327 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 7.74 71.98 0.56 -2.96 16 2 C 0.04 0.91 0.47 -54.73 -0.03 0.89 16 3 C 0.22 7.58 9.17 89.44 0.82 8.40 16 4 N -0.44 -18.92 18.54 20.01 0.37 -18.55 16 5 C -0.09 -1.55 4.17 29.85 0.12 -1.43 16 6 C 0.48 9.21 7.77 71.23 0.55 9.76 16 7 O -0.54 -14.33 13.28 21.95 0.29 -14.04 16 8 O -0.50 -6.44 13.42 -51.37 -0.69 -7.13 16 9 C 0.54 14.55 6.46 87.66 0.57 15.11 16 10 O -0.54 -14.88 15.42 -3.03 -0.05 -14.93 16 11 N -0.60 -17.78 2.96 -818.92 -2.42 -20.20 16 12 C 0.12 2.96 6.41 86.36 0.55 3.51 16 13 C -0.13 -3.92 6.08 30.67 0.19 -3.73 16 14 C -0.12 -4.80 4.66 30.62 0.14 -4.65 16 15 C 0.00 0.20 1.84 -11.46 -0.02 0.18 16 16 H 0.01 0.35 7.20 -2.39 -0.02 0.33 16 17 C -0.51 -28.37 9.14 25.60 0.23 -28.13 16 18 H 0.04 2.62 7.99 -2.91 -0.02 2.60 16 19 C 0.02 1.15 5.45 84.65 0.46 1.61 16 20 N -0.94 -59.36 13.96 21.45 0.30 -59.06 16 21 Si 0.94 46.51 24.39 68.60 1.67 48.18 16 22 H -0.26 -11.59 6.86 99.48 0.68 -10.91 16 23 H -0.30 -15.29 7.11 99.48 0.71 -14.59 16 24 H -0.26 -12.79 6.53 99.48 0.65 -12.14 16 25 C 0.12 4.25 3.64 86.36 0.31 4.57 16 26 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.09 2.21 5.68 -2.39 -0.01 2.20 16 28 H 0.07 1.77 5.29 -2.39 -0.01 1.76 16 29 H 0.17 1.86 8.02 -2.39 -0.02 1.84 16 30 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.43 2.22 9.10 -74.05 -0.67 1.54 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.10 2.39 7.05 -2.39 -0.02 2.38 16 34 H 0.10 2.34 8.14 -2.39 -0.02 2.33 16 35 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.07 2.69 8.14 -2.38 -0.02 2.68 16 37 H 0.03 1.36 3.27 -2.39 -0.01 1.35 16 38 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 39 H 0.08 2.92 3.25 -2.39 -0.01 2.91 16 40 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -77.62 317.61 4.28 -73.34 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.34 Total: 9.26 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 4.47 Total: 3.13 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -1.75 Total: -97.81 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.44 Total: -36.10 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.67 Total: 48.18 kcal Total: -77.62 4.28 -73.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602778724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.614 kcal (2) G-P(sol) polarization free energy of solvation -77.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds