Wall clock time and date at job start Tue Mar 31 2020 06:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.47198 * 109.47268 * 2 1 4 4 N 2.60800 * 109.47213 * 359.97438 * 2 1 3 5 5 C 1.52995 * 109.47265 * 120.00038 * 2 1 3 6 6 C 1.50703 * 109.47356 * 299.99802 * 5 2 1 7 7 O 1.20831 * 119.99421 * 0.02562 * 6 5 2 8 8 O 1.34228 * 120.00183 * 179.97438 * 6 5 2 9 9 C 1.50702 * 109.47093 * 239.99982 * 2 1 3 10 10 O 1.21283 * 120.00047 * 238.93845 * 9 2 1 11 11 N 1.34775 * 119.99902 * 58.93460 * 9 2 1 12 12 C 1.46923 * 120.63102 * 4.63830 * 11 9 2 13 13 C 1.53629 * 108.54184 * 126.36959 * 12 11 9 14 14 C 1.53040 * 109.24073 * 54.85513 * 13 12 11 15 15 C 1.53040 * 109.54202 * 298.51214 * 14 13 12 16 16 H 1.09005 * 109.52094 * 301.40103 * 15 14 13 17 17 C 1.50697 * 109.49767 * 181.31751 * 15 14 13 18 18 H 1.07999 * 119.99687 * 240.15737 * 17 15 14 19 19 C 1.37869 * 120.00033 * 60.16345 * 17 15 14 20 20 N 1.31516 * 120.00348 * 359.97438 * 19 17 15 21 21 Si 1.86804 * 120.00134 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46975 * 89.99889 * 21 19 17 23 23 H 1.48503 * 109.47315 * 209.99884 * 21 19 17 24 24 H 1.48501 * 109.46741 * 330.00062 * 21 19 17 25 25 C 1.46922 * 120.62905 * 184.91888 * 11 9 2 26 26 H 1.09001 * 109.47156 * 67.57103 * 1 2 3 27 27 H 1.09005 * 109.47326 * 187.57011 * 1 2 3 28 28 H 1.08998 * 109.46801 * 307.56934 * 1 2 3 29 29 H 1.09001 * 109.47458 * 59.99759 * 5 2 1 30 30 H 1.09004 * 109.47690 * 179.97438 * 5 2 1 31 31 H 0.96698 * 116.99527 * 179.97438 * 8 6 5 32 32 H 1.09004 * 109.59044 * 246.20098 * 12 11 9 33 33 H 1.08997 * 109.58752 * 6.63016 * 12 11 9 34 34 H 1.09004 * 109.63260 * 294.86354 * 13 12 11 35 35 H 1.08996 * 109.42853 * 174.72712 * 13 12 11 36 36 H 1.08998 * 109.45694 * 178.48886 * 14 13 12 37 37 H 1.08996 * 109.45634 * 58.53501 * 14 13 12 38 38 H 0.97006 * 120.00499 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.59251 * 353.37575 * 25 11 9 40 40 H 1.09005 * 109.59113 * 113.65406 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3993 2.4588 -0.0011 5 6 2.0400 -0.7212 1.2492 6 6 1.5377 -0.0108 2.4797 7 8 0.8427 0.9713 2.3688 8 8 1.8616 -0.4697 3.6988 9 6 2.0323 -0.7104 -1.2305 10 8 2.7454 -1.6852 -1.1193 11 7 1.6891 -0.2626 -2.4544 12 6 0.9107 0.9740 -2.6080 13 6 1.6617 1.9077 -3.5695 14 6 1.9322 1.1685 -4.8820 15 6 2.8140 -0.0522 -4.6096 16 1 3.7496 0.2691 -4.1517 17 6 3.1064 -0.7610 -5.9070 18 1 2.8006 -1.7880 -6.0420 19 6 3.7643 -0.0985 -6.9214 20 7 4.1363 1.1522 -6.7571 21 14 4.1273 -0.9773 -8.5294 22 1 2.9951 -0.7773 -9.4693 23 1 5.3697 -0.4245 -9.1261 24 1 4.3056 -2.4287 -8.2708 25 6 2.0809 -1.0051 -3.6602 26 1 -0.3633 0.3921 -0.9499 27 1 -0.3634 -1.0187 0.1354 28 1 -0.3633 0.6266 0.8145 29 1 1.6767 -1.7489 1.2493 30 1 3.1300 -0.7217 1.2490 31 1 1.5162 0.0195 4.4580 32 1 -0.0723 0.7388 -3.0161 33 1 0.7996 1.4587 -1.6381 34 1 2.6079 2.2110 -3.1211 35 1 1.0531 2.7900 -3.7674 36 1 2.4413 1.8366 -5.5766 37 1 0.9871 0.8440 -5.3172 38 1 4.5995 1.6182 -7.4707 39 1 2.7421 -1.8267 -3.3848 40 1 1.1916 -1.4006 -4.1510 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602778730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:30 Heat of formation + Delta-G solvation = -93.528254 kcal Electronic energy + Delta-G solvation = -24537.780451 eV Core-core repulsion = 20931.998317 eV Total energy + Delta-G solvation = -3605.782134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24631 -40.01939 -37.30853 -36.93393 -36.23202 -34.35108 -33.49404 -31.46134 -30.38865 -28.72908 -25.90648 -25.16391 -24.03584 -21.97131 -21.68971 -20.71070 -19.19714 -18.36134 -17.97564 -16.58290 -16.45979 -16.12505 -15.84471 -15.57275 -14.74007 -14.48135 -14.22219 -13.83310 -13.72303 -13.56395 -13.11152 -12.95785 -12.89874 -12.59798 -12.48283 -12.31920 -12.16395 -12.10586 -11.82790 -11.64721 -11.46961 -11.01077 -10.88679 -10.76280 -10.69296 -10.35599 -9.98106 -9.92117 -9.61686 -9.43141 -8.88629 -8.43979 -8.08018 -6.05015 -4.13020 1.87668 2.39690 2.49499 2.66115 2.87095 3.27706 3.33884 3.35917 3.40372 3.71507 4.14475 4.39438 4.47692 4.54267 4.99709 5.12747 5.18277 5.26121 5.29050 5.44295 5.45586 5.54389 5.69847 5.88865 6.00519 6.24328 6.26051 6.29472 6.39477 6.55511 6.67648 6.80492 7.09307 7.24984 7.45342 7.56205 7.64227 7.71729 7.88834 8.02239 8.21781 8.35868 8.90461 9.52401 11.00474 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031885 B = 0.003931 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.955949 B = 7121.572831 C = 7469.540406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.034 3.966 3 C 0.213 3.787 4 N -0.399 5.399 5 C -0.092 4.092 6 C 0.480 3.520 7 O -0.507 6.507 8 O -0.512 6.512 9 C 0.525 3.475 10 O -0.531 6.531 11 N -0.589 5.589 12 C 0.097 3.903 13 C -0.134 4.134 14 C -0.112 4.112 15 C 0.039 3.961 16 H 0.030 0.970 17 C -0.516 4.516 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.894 3.106 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.116 3.884 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.412 0.588 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.038 0.962 38 H 0.261 0.739 39 H 0.083 0.917 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.982 -2.833 16.163 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.027 3.973 3 C -0.105 4.105 4 N -0.074 5.074 5 C -0.131 4.131 6 C 0.322 3.678 7 O -0.395 6.395 8 O -0.324 6.324 9 C 0.308 3.692 10 O -0.408 6.408 11 N -0.319 5.319 12 C -0.026 4.026 13 C -0.172 4.172 14 C -0.150 4.150 15 C 0.020 3.980 16 H 0.048 0.952 17 C -0.554 4.554 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 C -0.004 4.004 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.271 0.729 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.965 -1.530 15.724 17.692 hybrid contribution -0.168 -0.288 -0.421 0.537 sum -8.133 -1.818 15.303 17.424 Atomic orbital electron populations 1.22431 0.88920 1.04982 1.06008 1.18202 0.99150 0.84660 0.95284 1.28008 0.94319 0.94122 0.94086 1.81211 1.07521 1.11341 1.07368 1.21194 1.05022 1.01066 0.85779 1.23303 0.77069 0.82444 0.84955 1.90714 1.35759 1.26006 1.86986 1.84525 1.72287 1.58878 1.16696 1.19538 0.81147 0.84788 0.83681 1.90723 1.36675 1.27577 1.85859 1.48263 1.52828 1.24744 1.06109 1.22222 0.95079 0.85193 1.00126 1.22075 0.99612 0.97356 0.98180 1.21644 0.99168 0.99676 0.94507 1.18985 0.94030 0.91650 0.93299 0.95182 1.21036 1.37446 0.98432 0.98500 0.92346 1.24942 0.95309 0.94880 0.98657 1.69876 1.39544 1.10027 1.33165 0.86570 0.77752 0.79963 0.83576 1.20681 1.21260 1.19806 1.22140 0.99556 0.95860 0.82841 0.89866 0.90028 0.88401 0.84615 0.85746 0.72908 0.90893 0.90883 0.92367 0.92292 0.88530 0.94368 0.92906 0.89826 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 7.72 37.16 0.29 -1.37 16 2 C 0.03 0.43 0.47 -158.45 -0.07 0.35 16 3 C 0.21 3.22 9.28 -20.76 -0.19 3.03 16 4 N -0.40 -6.90 18.54 42.15 0.78 -6.12 16 5 C -0.09 -0.91 4.14 -27.88 -0.12 -1.03 16 6 C 0.48 4.61 7.77 36.01 0.28 4.89 16 7 O -0.51 -6.11 13.29 -18.75 -0.25 -6.36 16 8 O -0.51 -3.62 13.42 -39.25 -0.53 -4.15 16 9 C 0.52 8.37 6.46 -10.99 -0.07 8.30 16 10 O -0.53 -9.66 15.40 5.55 0.09 -9.57 16 11 N -0.59 -10.10 2.96 -172.50 -0.51 -10.61 16 12 C 0.10 1.49 4.33 -3.48 -0.02 1.48 16 13 C -0.13 -2.47 6.10 -26.38 -0.16 -2.63 16 14 C -0.11 -2.47 4.96 -26.69 -0.13 -2.60 16 15 C 0.04 0.94 2.25 -91.65 -0.21 0.73 16 16 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 17 C -0.52 -13.54 8.56 -34.44 -0.29 -13.84 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -24.75 11.32 55.43 0.63 -24.13 16 21 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.12 2.33 5.66 -3.71 -0.02 2.31 16 26 H 0.08 0.83 5.00 -51.93 -0.26 0.57 16 27 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.10 1.00 5.72 -51.93 -0.30 0.70 16 29 H 0.14 1.06 8.11 -51.93 -0.42 0.64 16 30 H 0.12 1.25 8.09 -51.93 -0.42 0.83 16 31 H 0.41 1.20 9.10 45.56 0.41 1.61 16 32 H 0.07 0.98 8.00 -51.93 -0.42 0.57 16 33 H 0.07 1.04 3.43 -51.93 -0.18 0.86 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 2.45 6.05 -51.93 -0.31 2.14 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.08 1.76 7.00 -51.93 -0.36 1.40 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 324.18 15.07 4.89 4.89 Total: -1.00 -32.08 324.18 -5.07 -37.15 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.33 Total: 1.93 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.81 Total: 1.24 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.90 Total: -40.85 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.69 Total: -20.07 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.08 -5.07 -37.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602778730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.380 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds