Wall clock time and date at job start Tue Mar 31 2020 06:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.47198 * 109.47268 * 2 1 4 4 N 2.60800 * 109.47213 * 359.97438 * 2 1 3 5 5 C 1.52995 * 109.47265 * 120.00038 * 2 1 3 6 6 C 1.50703 * 109.47356 * 299.99802 * 5 2 1 7 7 O 1.20831 * 119.99421 * 0.02562 * 6 5 2 8 8 O 1.34228 * 120.00183 * 179.97438 * 6 5 2 9 9 C 1.50702 * 109.47093 * 239.99982 * 2 1 3 10 10 O 1.21283 * 120.00047 * 238.93845 * 9 2 1 11 11 N 1.34775 * 119.99902 * 58.93460 * 9 2 1 12 12 C 1.46923 * 120.63102 * 4.63830 * 11 9 2 13 13 C 1.53629 * 108.54184 * 126.36959 * 12 11 9 14 14 C 1.53040 * 109.24073 * 54.85513 * 13 12 11 15 15 C 1.53040 * 109.54202 * 298.51214 * 14 13 12 16 16 H 1.09005 * 109.52094 * 301.40103 * 15 14 13 17 17 C 1.50697 * 109.49767 * 181.31751 * 15 14 13 18 18 H 1.07999 * 119.99687 * 240.15737 * 17 15 14 19 19 C 1.37869 * 120.00033 * 60.16345 * 17 15 14 20 20 N 1.31516 * 120.00348 * 359.97438 * 19 17 15 21 21 Si 1.86804 * 120.00134 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46975 * 89.99889 * 21 19 17 23 23 H 1.48503 * 109.47315 * 209.99884 * 21 19 17 24 24 H 1.48501 * 109.46741 * 330.00062 * 21 19 17 25 25 C 1.46922 * 120.62905 * 184.91888 * 11 9 2 26 26 H 1.09001 * 109.47156 * 67.57103 * 1 2 3 27 27 H 1.09005 * 109.47326 * 187.57011 * 1 2 3 28 28 H 1.08998 * 109.46801 * 307.56934 * 1 2 3 29 29 H 1.09001 * 109.47458 * 59.99759 * 5 2 1 30 30 H 1.09004 * 109.47690 * 179.97438 * 5 2 1 31 31 H 0.96698 * 116.99527 * 179.97438 * 8 6 5 32 32 H 1.09004 * 109.59044 * 246.20098 * 12 11 9 33 33 H 1.08997 * 109.58752 * 6.63016 * 12 11 9 34 34 H 1.09004 * 109.63260 * 294.86354 * 13 12 11 35 35 H 1.08996 * 109.42853 * 174.72712 * 13 12 11 36 36 H 1.08998 * 109.45694 * 178.48886 * 14 13 12 37 37 H 1.08996 * 109.45634 * 58.53501 * 14 13 12 38 38 H 0.97006 * 120.00499 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.59251 * 353.37575 * 25 11 9 40 40 H 1.09005 * 109.59113 * 113.65406 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3993 2.4588 -0.0011 5 6 2.0400 -0.7212 1.2492 6 6 1.5377 -0.0108 2.4797 7 8 0.8427 0.9713 2.3688 8 8 1.8616 -0.4697 3.6988 9 6 2.0323 -0.7104 -1.2305 10 8 2.7454 -1.6852 -1.1193 11 7 1.6891 -0.2626 -2.4544 12 6 0.9107 0.9740 -2.6080 13 6 1.6617 1.9077 -3.5695 14 6 1.9322 1.1685 -4.8820 15 6 2.8140 -0.0522 -4.6096 16 1 3.7496 0.2691 -4.1517 17 6 3.1064 -0.7610 -5.9070 18 1 2.8006 -1.7880 -6.0420 19 6 3.7643 -0.0985 -6.9214 20 7 4.1363 1.1522 -6.7571 21 14 4.1273 -0.9773 -8.5294 22 1 2.9951 -0.7773 -9.4693 23 1 5.3697 -0.4245 -9.1261 24 1 4.3056 -2.4287 -8.2708 25 6 2.0809 -1.0051 -3.6602 26 1 -0.3633 0.3921 -0.9499 27 1 -0.3634 -1.0187 0.1354 28 1 -0.3633 0.6266 0.8145 29 1 1.6767 -1.7489 1.2493 30 1 3.1300 -0.7217 1.2490 31 1 1.5162 0.0195 4.4580 32 1 -0.0723 0.7388 -3.0161 33 1 0.7996 1.4587 -1.6381 34 1 2.6079 2.2110 -3.1211 35 1 1.0531 2.7900 -3.7674 36 1 2.4413 1.8366 -5.5766 37 1 0.9871 0.8440 -5.3172 38 1 4.5995 1.6182 -7.4707 39 1 2.7421 -1.8267 -3.3848 40 1 1.1916 -1.4006 -4.1510 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602778730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:29 Heat of formation + Delta-G solvation = -115.490776 kcal Electronic energy + Delta-G solvation = -24538.732817 eV Core-core repulsion = 20931.998317 eV Total energy + Delta-G solvation = -3606.734501 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.27941 -41.01876 -38.67088 -38.19345 -37.04955 -35.60254 -35.12107 -33.11247 -32.02834 -29.64634 -27.16819 -26.95416 -25.27929 -23.49494 -22.63044 -22.10083 -20.67891 -19.30769 -19.07366 -18.35517 -17.33754 -17.30704 -16.88101 -16.82204 -16.41063 -15.87631 -15.48234 -15.23541 -15.04176 -14.71763 -14.58785 -14.42401 -14.03339 -13.74806 -13.68706 -13.66368 -13.51631 -13.17236 -12.87090 -12.84717 -12.71118 -12.59323 -12.39005 -12.34617 -11.97024 -11.81558 -11.62097 -11.51772 -11.29357 -10.92654 -10.72750 -10.42977 -9.59417 -8.09312 -6.24900 1.15054 1.15824 1.43096 1.44523 1.44867 1.50667 1.54602 1.82940 2.23709 2.45177 2.61044 3.17432 3.18166 3.37262 3.64578 3.90401 4.09324 4.26683 4.36031 4.37368 4.49777 4.55655 4.58064 4.71653 4.73369 4.78341 4.79615 4.94919 5.05309 5.16592 5.18869 5.41264 5.47253 5.61803 5.66060 5.91698 6.11796 6.26397 6.32949 6.35538 6.84552 6.95078 6.98579 7.44196 8.94572 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031885 B = 0.003931 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.955949 B = 7121.572831 C = 7469.540406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.041 3.959 3 C 0.227 3.773 4 N -0.442 5.442 5 C -0.094 4.094 6 C 0.490 3.510 7 O -0.533 6.533 8 O -0.505 6.505 9 C 0.526 3.474 10 O -0.554 6.554 11 N -0.595 5.595 12 C 0.103 3.897 13 C -0.128 4.128 14 C -0.103 4.103 15 C 0.038 3.962 16 H -0.019 1.019 17 C -0.532 4.532 18 H 0.062 0.938 19 C 0.014 3.986 20 N -0.918 5.918 21 Si 0.956 3.044 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.267 1.267 25 C 0.130 3.870 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.163 0.837 30 H 0.121 0.879 31 H 0.432 0.568 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.028 0.972 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.259 0.741 39 H 0.068 0.932 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.975 -4.103 17.237 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 C -0.091 4.091 4 N -0.118 5.118 5 C -0.133 4.133 6 C 0.333 3.667 7 O -0.424 6.424 8 O -0.319 6.319 9 C 0.311 3.689 10 O -0.432 6.432 11 N -0.326 5.326 12 C -0.020 4.020 13 C -0.166 4.166 14 C -0.142 4.142 15 C 0.019 3.981 16 H -0.001 1.001 17 C -0.570 4.570 18 H 0.080 0.920 19 C -0.185 4.185 20 N -0.557 5.557 21 Si 0.782 3.218 22 H -0.197 1.197 23 H -0.215 1.215 24 H -0.191 1.191 25 C 0.009 3.991 26 H 0.103 0.897 27 H 0.128 0.872 28 H 0.118 0.882 29 H 0.180 0.820 30 H 0.139 0.861 31 H 0.294 0.706 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.047 0.953 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.970 -2.803 16.842 19.772 hybrid contribution 0.525 0.089 -0.690 0.872 sum -9.445 -2.715 16.152 18.907 Atomic orbital electron populations 1.22497 0.86343 1.06959 1.06193 1.18331 1.00994 0.82734 0.94525 1.28535 0.93196 0.94510 0.92843 1.81225 1.08931 1.12903 1.08710 1.21255 1.04943 1.02151 0.84936 1.23060 0.76383 0.81734 0.85484 1.90718 1.37144 1.27080 1.87435 1.84475 1.71924 1.58872 1.16625 1.20023 0.80236 0.84540 0.84107 1.90713 1.37393 1.28818 1.86283 1.48246 1.53352 1.25182 1.05809 1.22327 0.95559 0.83812 1.00252 1.21968 0.99204 0.98637 0.96824 1.21421 0.98573 0.98446 0.95718 1.18904 0.92870 0.93184 0.93190 1.00068 1.21444 1.37292 0.98731 0.99549 0.92013 1.25735 0.95315 0.95498 1.01954 1.70040 1.40283 1.11393 1.34000 0.85580 0.77496 0.78986 0.79732 1.19735 1.21547 1.19118 1.21724 0.99492 0.94534 0.83381 0.89685 0.87200 0.88182 0.81973 0.86071 0.70612 0.87551 0.89271 0.95278 0.90018 0.92292 0.93314 0.93145 0.91328 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 7.72 71.98 0.56 -2.13 16 2 C 0.04 0.94 0.47 -54.74 -0.03 0.92 16 3 C 0.23 6.63 9.28 89.44 0.83 7.46 16 4 N -0.44 -15.17 18.54 20.01 0.37 -14.80 16 5 C -0.09 -1.65 4.14 29.85 0.12 -1.53 16 6 C 0.49 8.17 7.77 71.24 0.55 8.73 16 7 O -0.53 -11.69 13.29 21.95 0.29 -11.40 16 8 O -0.51 -5.69 13.42 -51.40 -0.69 -6.38 16 9 C 0.53 15.99 6.46 87.66 0.57 16.56 16 10 O -0.55 -19.58 15.40 -3.04 -0.05 -19.63 16 11 N -0.60 -19.69 2.96 -818.06 -2.42 -22.11 16 12 C 0.10 2.96 4.33 86.51 0.37 3.34 16 13 C -0.13 -4.69 6.10 30.82 0.19 -4.50 16 14 C -0.10 -4.64 4.96 30.62 0.15 -4.48 16 15 C 0.04 1.85 2.25 -11.46 -0.03 1.82 16 16 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 17 C -0.53 -28.39 8.56 25.60 0.22 -28.17 16 18 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 19 C 0.01 0.75 5.30 84.65 0.45 1.20 16 20 N -0.92 -52.92 11.32 21.44 0.24 -52.67 16 21 Si 0.96 42.91 29.54 68.60 2.03 44.94 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 C 0.13 5.17 5.66 86.36 0.49 5.66 16 26 H 0.08 1.38 5.00 -2.39 -0.01 1.37 16 27 H 0.11 1.23 8.13 -2.38 -0.02 1.22 16 28 H 0.10 1.73 5.72 -2.39 -0.01 1.71 16 29 H 0.16 1.98 8.11 -2.39 -0.02 1.96 16 30 H 0.12 2.24 8.09 -2.38 -0.02 2.22 16 31 H 0.43 1.26 9.10 -74.06 -0.67 0.59 16 32 H 0.11 2.44 8.00 -2.38 -0.02 2.42 16 33 H 0.09 2.33 3.43 -2.39 -0.01 2.33 16 34 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.08 2.60 8.14 -2.39 -0.02 2.59 16 36 H 0.06 3.10 6.05 -2.39 -0.01 3.09 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 39 H 0.07 2.91 7.00 -2.39 -0.02 2.90 16 40 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 Total: -1.00 -72.01 324.18 4.64 -67.37 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.41 Total: 9.82 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 4.45 Total: 4.85 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -1.81 Total: -89.58 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.45 Total: -37.41 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -72.01 4.64 -67.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602778730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.117 kcal (2) G-P(sol) polarization free energy of solvation -72.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds