Wall clock time and date at job start Tue Mar 31 2020 07:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50707 * 119.94209 * 180.02562 * 6 5 4 8 8 H 1.08990 * 109.47395 * 359.97438 * 7 6 5 9 9 C 1.53002 * 109.47109 * 239.99901 * 7 6 5 10 10 S 1.81404 * 109.46868 * 120.00501 * 7 6 5 11 11 C 1.81402 * 102.99822 * 185.00027 * 10 7 6 12 12 C 1.53004 * 109.46955 * 179.97438 * 11 10 7 13 13 C 1.53002 * 109.47132 * 300.00033 * 12 11 10 14 14 C 1.52996 * 109.46858 * 60.00047 * 12 11 10 15 15 C 1.50695 * 109.46901 * 179.97438 * 12 11 10 16 16 H 1.08006 * 120.00191 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99720 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00261 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 119.99652 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47071 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46667 * 120.00103 * 19 17 15 22 22 H 1.48502 * 109.46776 * 239.99817 * 19 17 15 23 23 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 24 24 C 1.38137 * 120.05826 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 26 26 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 27 27 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 29 29 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 30 30 H 1.09004 * 109.46983 * 60.00306 * 9 7 6 31 31 H 1.09002 * 109.47030 * 179.97438 * 9 7 6 32 32 H 1.09004 * 109.47083 * 300.00221 * 9 7 6 33 33 H 1.08996 * 109.46972 * 299.99741 * 11 10 7 34 34 H 1.09002 * 109.47048 * 59.99862 * 11 10 7 35 35 H 1.08996 * 109.46802 * 60.00116 * 13 12 11 36 36 H 1.08995 * 109.46639 * 180.02562 * 13 12 11 37 37 H 1.08995 * 109.46729 * 299.99928 * 13 12 11 38 38 H 1.09001 * 109.47554 * 60.00080 * 14 12 11 39 39 H 1.09001 * 109.47259 * 180.02562 * 14 12 11 40 40 H 1.09006 * 109.47686 * 299.99601 * 14 12 11 41 41 H 0.96996 * 119.99844 * 179.97438 * 18 17 15 42 42 H 1.08007 * 119.96697 * 180.02562 * 23 6 5 43 43 H 1.07992 * 120.03165 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0119 8 1 5.0666 4.8758 -0.0159 9 6 3.5806 5.8036 1.2372 10 16 3.4919 5.9419 -1.4931 11 6 4.5167 7.4360 -1.4034 12 6 4.2138 8.3349 -2.6039 13 6 4.5248 7.5800 -3.8978 14 6 2.7354 8.7286 -2.5859 15 6 5.0647 9.5764 -2.5290 16 1 5.7530 9.7106 -1.7077 17 6 4.9652 10.5405 -3.5098 18 7 4.1274 10.3768 -4.5102 19 14 6.0205 12.0791 -3.4174 20 1 6.8738 12.0219 -2.2034 21 1 6.8821 12.1615 -4.6241 22 1 5.1449 13.2767 -3.3516 23 6 1.9211 3.6048 -0.0001 24 6 1.2915 2.3752 0.0053 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 4.0209 0.3800 -0.0014 29 1 5.1345 2.5750 -0.0108 30 1 3.8776 5.2488 2.1273 31 1 4.0759 6.7746 1.2328 32 1 2.5000 5.9464 1.2418 33 1 4.2954 7.9735 -0.4815 34 1 5.5699 7.1554 -1.4166 35 1 3.9090 6.6823 -3.9516 36 1 4.3095 8.2206 -4.7529 37 1 5.5780 7.2995 -3.9105 38 1 2.5138 9.2665 -1.6641 39 1 2.5195 9.3687 -3.4414 40 1 2.1195 7.8309 -2.6398 41 1 4.0572 11.0553 -5.1999 42 1 1.3342 4.5115 -0.0001 43 1 0.2130 2.3202 0.0099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001613501587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:31 Heat of formation + Delta-G solvation = -30.744512 kcal Electronic energy + Delta-G solvation = -21056.728465 eV Core-core repulsion = 17999.962053 eV Total energy + Delta-G solvation = -3056.766412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.22849 -37.90319 -35.88928 -33.63355 -31.49682 -31.12219 -29.20682 -27.32400 -26.01941 -25.56715 -25.07818 -23.86382 -22.53716 -20.93246 -18.92112 -18.26433 -16.48965 -16.17066 -15.89809 -15.81560 -15.00459 -14.70406 -14.49598 -14.06102 -13.83201 -13.62629 -13.34176 -13.02675 -12.80712 -12.56290 -12.41382 -12.14283 -12.05780 -11.48236 -11.36246 -11.25295 -11.05676 -10.92600 -10.83161 -10.76185 -10.53209 -10.22748 -10.01556 -9.46513 -9.45558 -9.30726 -9.03315 -8.50638 -8.35303 -8.08283 -6.93450 -5.96904 -4.08222 1.24393 1.33087 2.39694 3.11729 3.27643 3.33019 3.36876 3.40660 3.77973 4.41813 4.67339 4.72667 4.80901 4.90990 4.92740 5.15852 5.21863 5.28824 5.32924 5.37624 5.44994 5.59976 5.75432 5.89400 6.00850 6.06000 6.18799 6.21354 6.22880 6.33313 6.61267 6.63047 6.67926 6.88711 7.03504 7.20923 7.22292 7.26745 7.45127 7.69078 7.74359 8.11324 8.22690 8.44963 8.91475 9.56879 11.03789 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036350 B = 0.003038 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.094920 B = 9213.813886 C = 9440.242672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.120 3.880 4 C -0.152 4.152 5 C -0.070 4.070 6 C -0.089 4.089 7 C -0.030 4.030 8 H 0.085 0.915 9 C -0.141 4.141 10 S -0.253 6.253 11 C -0.056 4.056 12 C 0.083 3.917 13 C -0.132 4.132 14 C -0.131 4.131 15 C -0.505 4.505 16 H 0.054 0.946 17 C 0.067 3.933 18 N -0.883 5.883 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.060 4.060 24 C -0.206 4.206 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.021 0.979 36 H 0.082 0.918 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.082 0.918 40 H 0.021 0.979 41 H 0.259 0.741 42 H 0.131 0.869 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 -16.623 10.112 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.171 4.171 5 C -0.090 4.090 6 C -0.090 4.090 7 C -0.158 4.158 8 H 0.104 0.896 9 C -0.200 4.200 10 S -0.023 6.023 11 C -0.204 4.204 12 C 0.081 3.919 13 C -0.189 4.189 14 C -0.189 4.189 15 C -0.545 4.545 16 H 0.073 0.927 17 C -0.135 4.135 18 N -0.521 5.521 19 Si 0.719 3.281 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.079 4.079 24 C -0.225 4.225 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.101 0.899 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.100 0.900 40 H 0.039 0.961 41 H 0.069 0.931 42 H 0.149 0.851 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.000 -16.983 9.167 20.211 hybrid contribution 1.282 1.389 0.920 2.102 sum -4.718 -15.595 10.087 19.163 Atomic orbital electron populations 1.23035 0.78535 1.03719 1.01462 1.86045 1.21294 1.27159 1.88938 1.19029 0.92375 0.84029 0.97087 1.20337 0.91312 0.98403 1.07009 1.20840 0.99791 0.90794 0.97546 1.19261 0.93556 0.93242 1.02988 1.21998 1.01746 0.94436 0.97657 0.89611 1.22072 1.02545 0.99679 0.95683 1.87029 1.59463 1.23993 1.31776 1.23858 0.98665 0.93475 1.04366 1.17946 0.94076 0.91527 0.88342 1.21844 0.97696 0.97714 1.01693 1.21839 0.96429 0.99016 1.01583 1.21086 1.22140 1.02678 1.08634 0.92749 1.24888 0.95339 0.98015 0.95256 1.69840 1.36067 1.34353 1.11865 0.86555 0.80361 0.83234 0.77934 1.19901 1.21043 1.21042 1.20868 0.93987 0.97285 0.95741 1.21195 0.99933 0.92214 1.09128 0.92718 0.92559 0.88418 0.85312 0.85346 0.92482 0.91939 0.91532 0.91656 0.91856 0.96014 0.89934 0.95802 0.95803 0.89953 0.96057 0.93072 0.85135 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.57 10.50 -19.44 -0.20 -3.78 16 3 C 0.12 1.46 6.69 -39.21 -0.26 1.20 16 4 C -0.15 -1.80 9.99 -39.43 -0.39 -2.19 16 5 C -0.07 -0.86 9.66 -39.61 -0.38 -1.24 16 6 C -0.09 -1.20 4.78 -104.60 -0.50 -1.70 16 7 C -0.03 -0.44 3.01 -27.88 -0.08 -0.52 16 8 H 0.09 1.19 7.87 -51.93 -0.41 0.79 16 9 C -0.14 -1.83 8.91 37.16 0.33 -1.50 16 10 S -0.25 -4.64 17.81 -107.50 -1.91 -6.56 16 11 C -0.06 -1.16 4.58 37.16 0.17 -0.99 16 12 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 13 C -0.13 -3.22 8.01 37.16 0.30 -2.92 16 14 C -0.13 -3.17 8.01 37.16 0.30 -2.87 16 15 C -0.51 -13.44 8.01 -34.44 -0.28 -13.71 16 16 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 17 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 18 N -0.88 -24.30 9.35 55.43 0.52 -23.78 16 19 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.06 -0.78 8.77 -39.61 -0.35 -1.12 16 24 C -0.21 -2.43 9.04 -39.44 -0.36 -2.78 16 25 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 26 H 0.06 0.38 7.67 -51.93 -0.40 -0.01 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.13 1.33 7.94 -52.49 -0.42 0.92 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.85 6.92 -51.93 -0.36 0.49 16 32 H 0.07 0.86 7.39 -51.93 -0.38 0.47 16 33 H 0.06 1.32 7.14 -51.93 -0.37 0.95 16 34 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 35 H 0.02 0.49 6.91 -51.93 -0.36 0.13 16 36 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 40 H 0.02 0.48 6.92 -51.93 -0.36 0.12 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.13 1.68 7.58 -52.48 -0.40 1.29 16 43 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -28.53 350.71 -8.91 -37.44 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.89 Total: 1.10 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -0.69 Total: -25.56 kcal Atomic # 7 Polarization: -24.30 SS G_CDS: 0.52 Total: -23.78 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.20 Total: -3.78 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -1.91 Total: -6.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.53 -8.91 -37.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001613501587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.693 kcal (2) G-P(sol) polarization free energy of solvation -28.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds