Wall clock time and date at job start Tue Mar 31 2020 07:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50707 * 119.94209 * 180.02562 * 6 5 4 8 8 H 1.08990 * 109.47395 * 359.97438 * 7 6 5 9 9 C 1.53002 * 109.47109 * 239.99901 * 7 6 5 10 10 S 1.81404 * 109.46868 * 120.00501 * 7 6 5 11 11 C 1.81402 * 102.99822 * 185.00027 * 10 7 6 12 12 C 1.53004 * 109.46955 * 179.97438 * 11 10 7 13 13 C 1.53002 * 109.47132 * 300.00033 * 12 11 10 14 14 C 1.52996 * 109.46858 * 60.00047 * 12 11 10 15 15 C 1.50695 * 109.46901 * 179.97438 * 12 11 10 16 16 H 1.08006 * 120.00191 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99720 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00261 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 119.99652 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47071 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46667 * 120.00103 * 19 17 15 22 22 H 1.48502 * 109.46776 * 239.99817 * 19 17 15 23 23 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 24 24 C 1.38137 * 120.05826 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 26 26 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 27 27 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 29 29 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 30 30 H 1.09004 * 109.46983 * 60.00306 * 9 7 6 31 31 H 1.09002 * 109.47030 * 179.97438 * 9 7 6 32 32 H 1.09004 * 109.47083 * 300.00221 * 9 7 6 33 33 H 1.08996 * 109.46972 * 299.99741 * 11 10 7 34 34 H 1.09002 * 109.47048 * 59.99862 * 11 10 7 35 35 H 1.08996 * 109.46802 * 60.00116 * 13 12 11 36 36 H 1.08995 * 109.46639 * 180.02562 * 13 12 11 37 37 H 1.08995 * 109.46729 * 299.99928 * 13 12 11 38 38 H 1.09001 * 109.47554 * 60.00080 * 14 12 11 39 39 H 1.09001 * 109.47259 * 180.02562 * 14 12 11 40 40 H 1.09006 * 109.47686 * 299.99601 * 14 12 11 41 41 H 0.96996 * 119.99844 * 179.97438 * 18 17 15 42 42 H 1.08007 * 119.96697 * 180.02562 * 23 6 5 43 43 H 1.07992 * 120.03165 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0119 8 1 5.0666 4.8758 -0.0159 9 6 3.5806 5.8036 1.2372 10 16 3.4919 5.9419 -1.4931 11 6 4.5167 7.4360 -1.4034 12 6 4.2138 8.3349 -2.6039 13 6 4.5248 7.5800 -3.8978 14 6 2.7354 8.7286 -2.5859 15 6 5.0647 9.5764 -2.5290 16 1 5.7530 9.7106 -1.7077 17 6 4.9652 10.5405 -3.5098 18 7 4.1274 10.3768 -4.5102 19 14 6.0205 12.0791 -3.4174 20 1 6.8738 12.0219 -2.2034 21 1 6.8821 12.1615 -4.6241 22 1 5.1449 13.2767 -3.3516 23 6 1.9211 3.6048 -0.0001 24 6 1.2915 2.3752 0.0053 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 4.0209 0.3800 -0.0014 29 1 5.1345 2.5750 -0.0108 30 1 3.8776 5.2488 2.1273 31 1 4.0759 6.7746 1.2328 32 1 2.5000 5.9464 1.2418 33 1 4.2954 7.9735 -0.4815 34 1 5.5699 7.1554 -1.4166 35 1 3.9090 6.6823 -3.9516 36 1 4.3095 8.2206 -4.7529 37 1 5.5780 7.2995 -3.9105 38 1 2.5138 9.2665 -1.6641 39 1 2.5195 9.3687 -3.4414 40 1 2.1195 7.8309 -2.6398 41 1 4.0572 11.0553 -5.1999 42 1 1.3342 4.5115 -0.0001 43 1 0.2130 2.3202 0.0099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001613501587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:30 Heat of formation + Delta-G solvation = -43.210770 kcal Electronic energy + Delta-G solvation = -21057.269043 eV Core-core repulsion = 17999.962053 eV Total energy + Delta-G solvation = -3057.306990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09138 -38.78225 -37.80901 -34.64823 -33.50501 -32.02915 -30.11808 -28.14128 -27.66283 -27.54516 -27.11598 -24.87275 -23.43119 -21.94913 -20.80168 -19.09924 -17.98587 -17.43178 -17.22154 -16.62969 -16.59262 -16.05496 -15.55022 -15.39820 -15.04644 -14.85650 -14.56473 -14.47170 -14.14721 -13.89285 -13.49925 -13.35263 -13.19011 -13.10049 -12.81883 -12.72239 -12.65096 -12.41149 -12.23758 -12.13318 -11.92830 -11.79255 -11.69142 -11.40172 -11.24155 -10.94365 -10.39466 -10.28743 -9.94493 -9.03227 -8.40269 -7.99927 -6.17818 0.23152 0.40345 1.10551 1.41646 1.45013 1.54444 1.89925 2.38891 2.46532 2.83508 3.22760 3.66808 3.81546 3.95858 4.09786 4.28937 4.34753 4.36205 4.40733 4.42397 4.45981 4.56203 4.69126 4.73996 4.76403 4.80844 4.89830 4.98161 5.09411 5.09860 5.20442 5.26784 5.26914 5.29562 5.39953 5.48179 5.66274 5.67223 5.68058 5.78292 6.11833 6.23025 6.43001 6.44627 6.88257 7.49968 8.99045 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036350 B = 0.003038 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.094920 B = 9213.813886 C = 9440.242672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.116 3.884 4 C -0.159 4.159 5 C -0.071 4.071 6 C -0.107 4.107 7 C -0.014 4.014 8 H 0.092 0.908 9 C -0.137 4.137 10 S -0.277 6.277 11 C -0.048 4.048 12 C 0.074 3.926 13 C -0.119 4.119 14 C -0.118 4.118 15 C -0.523 4.523 16 H 0.050 0.950 17 C 0.023 3.977 18 N -0.904 5.904 19 Si 0.949 3.051 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.282 1.282 23 C -0.069 4.069 24 C -0.209 4.209 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.120 0.880 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.030 0.970 36 H 0.056 0.944 37 H 0.019 0.981 38 H 0.021 0.979 39 H 0.055 0.945 40 H 0.031 0.969 41 H 0.259 0.741 42 H 0.127 0.873 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.308 -17.991 11.363 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.070 3.930 4 C -0.178 4.178 5 C -0.090 4.090 6 C -0.108 4.108 7 C -0.142 4.142 8 H 0.111 0.889 9 C -0.196 4.196 10 S -0.046 6.046 11 C -0.196 4.196 12 C 0.073 3.927 13 C -0.177 4.177 14 C -0.176 4.176 15 C -0.563 4.563 16 H 0.069 0.931 17 C -0.177 4.177 18 N -0.543 5.543 19 Si 0.775 3.225 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.089 4.089 24 C -0.227 4.227 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.139 0.861 28 H 0.162 0.838 29 H 0.163 0.837 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.145 0.855 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.028 -18.348 10.420 21.944 hybrid contribution 1.208 1.646 0.571 2.120 sum -4.819 -16.701 10.991 20.566 Atomic orbital electron populations 1.23332 0.76597 1.05560 1.02142 1.86037 1.23349 1.26682 1.88670 1.19228 0.92757 0.84530 0.96441 1.20597 0.91649 0.98916 1.06630 1.21038 1.00669 0.90467 0.96847 1.19253 0.93872 0.92960 1.04744 1.22015 1.02181 0.94397 0.95627 0.88939 1.22036 1.02444 0.99295 0.95839 1.86992 1.59145 1.23230 1.35271 1.23511 0.99011 0.94396 1.02668 1.17939 0.93516 0.91621 0.89624 1.21684 0.97535 0.97527 1.00978 1.21668 0.96919 0.98838 1.00165 1.21396 1.22456 1.03883 1.08530 0.93130 1.25570 0.96419 1.00613 0.95075 1.69974 1.37037 1.35045 1.12277 0.85648 0.78897 0.80013 0.77896 1.19394 1.20922 1.20840 1.20941 0.94010 0.97740 0.96190 1.21389 1.01046 0.91676 1.08616 0.91691 0.92168 0.86148 0.83762 0.83723 0.90321 0.92818 0.91597 0.91535 0.92068 0.95087 0.92494 0.96149 0.95989 0.92564 0.95008 0.93169 0.85494 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.71 10.50 -92.47 -0.97 -7.68 16 3 C 0.12 2.59 6.69 22.51 0.15 2.74 16 4 C -0.16 -3.45 9.99 22.37 0.22 -3.23 16 5 C -0.07 -1.58 9.66 22.25 0.22 -1.37 16 6 C -0.11 -2.70 4.78 -19.85 -0.09 -2.79 16 7 C -0.01 -0.39 3.01 29.85 0.09 -0.30 16 8 H 0.09 2.40 7.87 -2.40 -0.02 2.38 16 9 C -0.14 -3.34 8.91 71.98 0.64 -2.70 16 10 S -0.28 -9.95 17.81 -56.49 -1.01 -10.95 16 11 C -0.05 -1.97 4.58 71.98 0.33 -1.64 16 12 C 0.07 3.62 0.52 -52.93 -0.03 3.59 16 13 C -0.12 -5.91 8.01 71.98 0.58 -5.33 16 14 C -0.12 -5.78 8.01 71.98 0.58 -5.20 16 15 C -0.52 -27.96 8.01 25.60 0.21 -27.76 16 16 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 17 C 0.02 1.22 5.15 84.66 0.44 1.65 16 18 N -0.90 -50.53 9.35 21.45 0.20 -50.33 16 19 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 C -0.07 -1.71 8.77 22.25 0.20 -1.52 16 24 C -0.21 -4.53 9.04 22.36 0.20 -4.33 16 25 H 0.06 0.66 7.65 -2.39 -0.02 0.64 16 26 H 0.06 0.69 7.67 -2.39 -0.02 0.67 16 27 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 29 H 0.15 2.66 7.94 -2.91 -0.02 2.64 16 30 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.05 1.40 6.92 -2.39 -0.02 1.38 16 32 H 0.06 1.61 7.39 -2.38 -0.02 1.59 16 33 H 0.07 2.67 7.14 -2.39 -0.02 2.65 16 34 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.03 1.43 6.91 -2.39 -0.02 1.41 16 36 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 40 H 0.03 1.44 6.92 -2.38 -0.02 1.43 16 41 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.13 3.15 7.58 -2.91 -0.02 3.13 16 43 H 0.15 2.47 6.30 -2.91 -0.02 2.45 16 Total: -1.00 -60.34 350.71 6.06 -54.28 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.98 Total: 16.55 kcal Atomic # 6 Polarization: -51.67 SS G_CDS: 4.83 Total: -46.84 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.20 Total: -50.33 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.97 Total: -7.68 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -9.95 SS G_CDS: -1.01 Total: -10.95 kcal Total: -60.34 6.06 -54.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001613501587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.072 kcal (2) G-P(sol) polarization free energy of solvation -60.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds