Wall clock time and date at job start Tue Mar 31 2020 06:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21586 * 119.99932 * 359.97438 * 14 13 3 16 16 C 1.47527 * 119.99702 * 179.97438 * 14 13 3 17 17 C 1.39986 * 120.60179 * 359.72403 * 16 14 13 18 18 C 1.38339 * 118.35044 * 179.77926 * 17 16 14 19 19 C 1.38356 * 119.45605 * 0.49660 * 18 17 16 20 20 N 1.31884 * 121.18540 * 359.74312 * 19 18 17 21 21 C 1.32231 * 121.80280 * 0.02562 * 20 19 18 22 22 O 1.35421 * 119.79932 * 180.02562 * 21 20 19 23 23 C 1.42896 * 117.00089 * 359.97438 * 22 21 20 24 24 C 1.53002 * 109.47134 * 179.97438 * 23 22 21 25 25 O 1.42905 * 109.46983 * 65.00021 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 33 33 H 1.08008 * 120.82355 * 0.02562 * 17 16 14 34 34 H 1.08003 * 120.26824 * 180.23549 * 18 17 16 35 35 H 1.08001 * 119.40349 * 179.76272 * 19 18 17 36 36 H 1.09001 * 109.47247 * 300.00234 * 23 22 21 37 37 H 1.09007 * 109.47087 * 60.00249 * 23 22 21 38 38 H 1.08998 * 109.47308 * 184.99681 * 24 23 22 39 39 H 1.08992 * 109.47376 * 305.00627 * 24 23 22 40 40 H 0.96697 * 114.00232 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3411 2.6326 0.4318 16 6 0.0448 3.3234 2.6278 17 6 0.9265 3.3622 3.7143 18 6 0.5142 3.9964 4.8726 19 6 -0.7485 4.5593 4.9275 20 7 -1.5652 4.5068 3.8933 21 6 -1.2192 3.9170 2.7615 22 8 -2.0899 3.8872 1.7247 23 6 -3.3598 4.5108 1.9257 24 6 -4.2004 4.3775 0.6543 25 8 -4.4898 2.9984 0.4170 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8292 -0.0604 -2.9503 32 1 2.2720 2.1231 1.9978 33 1 1.9060 2.9118 3.6486 34 1 1.1710 4.0480 5.7284 35 1 -1.0709 5.0509 5.8335 36 1 -3.8752 4.0263 2.7550 37 1 -3.2139 5.5664 2.1554 38 1 -5.1329 4.9287 0.7758 39 1 -3.6462 4.7832 -0.1919 40 1 -5.0214 2.8386 -0.3748 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624680717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:43 Heat of formation + Delta-G solvation = -86.804752 kcal Electronic energy + Delta-G solvation = -24048.907519 eV Core-core repulsion = 20443.416938 eV Total energy + Delta-G solvation = -3605.490581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.69998 -38.58721 -38.02795 -36.43194 -34.92989 -32.95577 -32.02414 -31.11167 -30.57785 -29.23963 -26.93143 -24.54027 -23.68390 -22.74072 -22.09170 -20.49973 -19.29527 -18.55815 -17.67003 -17.50757 -16.80491 -15.91397 -15.81303 -15.20788 -14.91613 -14.57786 -14.39329 -14.27921 -14.11595 -13.60785 -13.24662 -12.88436 -12.66733 -12.60378 -12.23761 -11.89893 -11.44557 -11.36663 -11.20332 -10.97844 -10.95464 -10.78310 -10.27725 -10.14619 -10.09435 -9.85788 -9.81026 -9.54719 -8.99378 -8.87518 -8.45886 -8.40747 -7.71837 -6.08986 -4.18343 0.85748 1.29369 3.07768 3.25852 3.32791 3.34716 3.41829 4.00064 4.17292 4.22101 4.31223 4.44853 4.78585 4.94492 4.96721 5.05898 5.16268 5.21896 5.26036 5.33883 5.54003 5.69618 5.70913 5.92589 6.11265 6.37000 6.48491 6.56493 6.76166 7.13472 7.28341 7.36679 7.45176 7.52858 7.62768 7.66731 7.75329 7.84334 7.95994 8.23178 8.72439 8.82787 9.21677 9.49217 10.96328 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017066 B = 0.004526 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.254863 B = 6184.594277 C = 7358.131154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.706 5.706 14 C 0.546 3.454 15 O -0.518 6.518 16 C -0.195 4.195 17 C -0.013 4.013 18 C -0.223 4.223 19 C 0.152 3.848 20 N -0.551 5.551 21 C 0.367 3.633 22 O -0.255 6.255 23 C 0.066 3.934 24 C 0.078 3.922 25 O -0.562 6.562 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.021 0.979 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.384 0.616 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.160 0.840 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.075 8.246 11.958 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.330 3.670 15 O -0.395 6.395 16 C -0.201 4.201 17 C -0.039 4.039 18 C -0.243 4.243 19 C -0.004 4.004 20 N -0.276 5.276 21 C 0.187 3.813 22 O -0.158 6.158 23 C -0.010 4.010 24 C 0.000 4.000 25 O -0.367 6.367 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.217 0.783 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.177 0.823 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.081 8.297 11.344 17.897 hybrid contribution 1.701 -0.150 -0.007 1.708 sum -9.380 8.147 11.336 16.819 Atomic orbital electron populations 1.21827 0.98143 0.97963 1.01423 1.21933 0.92738 0.99735 1.02158 1.18784 0.94097 0.89178 0.80871 0.93206 1.21228 0.90720 1.38975 1.06269 0.92154 1.24881 0.98513 0.94854 0.95390 1.69903 1.35059 1.37613 1.09317 0.86469 0.84989 0.78391 0.77362 1.20576 1.21104 1.19899 1.46401 1.14282 1.56283 1.18535 1.17696 0.83193 0.79738 0.86402 1.90817 1.50861 1.58736 1.39092 1.20498 0.94073 1.07352 0.98168 1.21734 0.98521 0.92748 0.90924 1.21877 0.98648 1.04123 0.99680 1.22523 0.89483 0.93250 0.95163 1.67429 1.37238 1.22215 1.00735 1.19883 0.87534 0.88334 0.85596 1.86640 1.24393 1.71983 1.32832 1.22720 0.82440 0.97876 0.97992 1.22194 0.96932 0.83850 0.96991 1.86608 1.76094 1.24394 1.49571 0.93109 0.94200 0.95986 0.95136 0.88333 0.92596 0.78313 0.83666 0.84229 0.82322 0.91093 0.90428 0.91831 0.92328 0.77429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.51 37.16 0.32 -2.90 16 2 C -0.13 -3.16 5.45 -26.74 -0.15 -3.31 16 3 C 0.27 6.97 2.24 -69.08 -0.15 6.81 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.83 11.30 55.43 0.63 -24.20 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.71 -15.12 4.98 -55.98 -0.28 -15.40 16 14 C 0.55 11.74 6.34 -12.47 -0.08 11.66 16 15 O -0.52 -12.93 12.33 -16.48 -0.20 -13.13 16 16 C -0.19 -3.43 5.90 -104.69 -0.62 -4.04 16 17 C -0.01 -0.18 9.64 -38.89 -0.37 -0.55 16 18 C -0.22 -2.37 10.09 -39.50 -0.40 -2.77 16 19 C 0.15 1.70 11.17 -17.49 -0.20 1.50 16 20 N -0.55 -7.97 9.21 -12.98 -0.12 -8.09 16 21 C 0.37 6.37 7.51 -16.61 -0.12 6.24 16 22 O -0.25 -4.71 8.18 -43.71 -0.36 -5.07 16 23 C 0.07 0.90 5.69 37.16 0.21 1.11 16 24 C 0.08 0.92 7.43 37.16 0.28 1.20 16 25 O -0.56 -7.79 13.62 -40.08 -0.55 -8.34 16 26 H 0.05 1.27 7.84 -51.93 -0.41 0.86 16 27 H 0.04 0.94 5.64 -51.93 -0.29 0.65 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.38 7.03 6.64 -40.82 -0.27 6.76 16 33 H 0.15 1.65 6.52 -52.48 -0.34 1.31 16 34 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 37 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.38 3.32 9.12 45.56 0.42 3.74 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -34.47 334.68 -7.06 -41.53 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -4.52 Total: 9.84 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.68 Total: 2.23 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.23 Total: -47.69 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -1.11 Total: -26.54 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.47 -7.06 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624680717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.273 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds