Wall clock time and date at job start Tue Mar 31 2020 06:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21586 * 119.99932 * 359.97438 * 14 13 3 16 16 C 1.47527 * 119.99702 * 179.97438 * 14 13 3 17 17 C 1.39986 * 120.60179 * 359.72403 * 16 14 13 18 18 C 1.38339 * 118.35044 * 179.77926 * 17 16 14 19 19 C 1.38356 * 119.45605 * 0.49660 * 18 17 16 20 20 N 1.31884 * 121.18540 * 359.74312 * 19 18 17 21 21 C 1.32231 * 121.80280 * 0.02562 * 20 19 18 22 22 O 1.35421 * 119.79932 * 180.02562 * 21 20 19 23 23 C 1.42896 * 117.00089 * 359.97438 * 22 21 20 24 24 C 1.53002 * 109.47134 * 179.97438 * 23 22 21 25 25 O 1.42905 * 109.46983 * 65.00021 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 33 33 H 1.08008 * 120.82355 * 0.02562 * 17 16 14 34 34 H 1.08003 * 120.26824 * 180.23549 * 18 17 16 35 35 H 1.08001 * 119.40349 * 179.76272 * 19 18 17 36 36 H 1.09001 * 109.47247 * 300.00234 * 23 22 21 37 37 H 1.09007 * 109.47087 * 60.00249 * 23 22 21 38 38 H 1.08998 * 109.47308 * 184.99681 * 24 23 22 39 39 H 1.08992 * 109.47376 * 305.00627 * 24 23 22 40 40 H 0.96697 * 114.00232 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3411 2.6326 0.4318 16 6 0.0448 3.3234 2.6278 17 6 0.9265 3.3622 3.7143 18 6 0.5142 3.9964 4.8726 19 6 -0.7485 4.5593 4.9275 20 7 -1.5652 4.5068 3.8933 21 6 -1.2192 3.9170 2.7615 22 8 -2.0899 3.8872 1.7247 23 6 -3.3598 4.5108 1.9257 24 6 -4.2004 4.3775 0.6543 25 8 -4.4898 2.9984 0.4170 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8292 -0.0604 -2.9503 32 1 2.2720 2.1231 1.9978 33 1 1.9060 2.9118 3.6486 34 1 1.1710 4.0480 5.7284 35 1 -1.0709 5.0509 5.8335 36 1 -3.8752 4.0263 2.7550 37 1 -3.2139 5.5664 2.1554 38 1 -5.1329 4.9287 0.7758 39 1 -3.6462 4.7832 -0.1919 40 1 -5.0214 2.8386 -0.3748 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001624680717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:42 Heat of formation + Delta-G solvation = -114.700188 kcal Electronic energy + Delta-G solvation = -24050.117156 eV Core-core repulsion = 20443.416938 eV Total energy + Delta-G solvation = -3606.700218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.87447 -40.20065 -39.14983 -37.47549 -36.84719 -34.50348 -33.72096 -32.48497 -32.01276 -30.34013 -28.89481 -25.80752 -25.09065 -24.35671 -23.12800 -22.19257 -21.14021 -19.76299 -19.13189 -18.63779 -17.96453 -17.65226 -17.03293 -16.94219 -16.19045 -16.03966 -15.94786 -15.46043 -15.30678 -15.04608 -14.57843 -14.38438 -14.10705 -13.77422 -13.68446 -13.43942 -13.29785 -13.15722 -12.88362 -12.64889 -12.37739 -12.16396 -12.05983 -12.00704 -11.59894 -11.11866 -11.03982 -10.96322 -10.92911 -10.55088 -10.42530 -9.67773 -9.42007 -8.14100 -6.31917 -0.25141 0.27067 1.46221 1.47157 1.57565 2.02539 2.08463 2.35624 2.59544 2.89740 3.15304 3.30934 3.32595 3.82337 3.88452 4.00881 4.05370 4.17439 4.27250 4.44011 4.48210 4.55113 4.56211 4.60880 4.73456 4.77085 4.94289 5.06804 5.13915 5.25804 5.44567 5.47095 5.56431 5.63966 5.79911 5.94556 6.17404 6.28912 6.74490 6.76205 6.86449 7.02302 7.35183 7.61321 8.91626 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017066 B = 0.004526 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.254863 B = 6184.594277 C = 7358.131154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.118 4.118 3 C 0.281 3.719 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.973 3.027 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.701 5.701 14 C 0.543 3.457 15 O -0.565 6.565 16 C -0.233 4.233 17 C -0.010 4.010 18 C -0.203 4.203 19 C 0.161 3.839 20 N -0.558 5.558 21 C 0.346 3.654 22 O -0.294 6.294 23 C 0.059 3.941 24 C 0.077 3.923 25 O -0.594 6.594 26 H 0.023 0.977 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.265 0.735 32 H 0.400 0.600 33 H 0.163 0.837 34 H 0.187 0.813 35 H 0.208 0.792 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.048 0.952 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.066 9.259 15.323 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.352 5.352 14 C 0.330 3.670 15 O -0.445 6.445 16 C -0.239 4.239 17 C -0.036 4.036 18 C -0.223 4.223 19 C 0.004 3.996 20 N -0.283 5.283 21 C 0.167 3.833 22 O -0.199 6.199 23 C -0.016 4.016 24 C 0.000 4.000 25 O -0.402 6.402 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.181 0.819 34 H 0.205 0.795 35 H 0.224 0.776 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.066 0.934 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.075 9.323 14.745 20.145 hybrid contribution 1.312 -0.382 -0.934 1.655 sum -8.763 8.941 13.811 18.641 Atomic orbital electron populations 1.21638 0.97287 0.98829 0.99965 1.21780 0.93351 0.99277 1.01344 1.18364 0.93804 0.88996 0.81089 0.98642 1.21563 0.91127 1.38999 1.06834 0.90819 1.25797 1.03439 0.94321 0.94928 1.70066 1.37134 1.38366 1.09875 0.85338 0.78908 0.78924 0.77105 1.19573 1.21388 1.18780 1.46111 1.15019 1.56335 1.17702 1.18319 0.82299 0.78896 0.87506 1.90780 1.52053 1.60419 1.41243 1.20239 0.95863 1.10192 0.97656 1.22035 0.98455 0.92545 0.90570 1.22377 0.98834 1.01445 0.99629 1.23479 0.89213 0.91535 0.95359 1.67538 1.38065 1.22110 1.00571 1.20056 0.87481 0.89311 0.86431 1.86596 1.26021 1.72901 1.34347 1.23000 0.81171 0.98512 0.98886 1.22377 0.98423 0.83352 0.95871 1.86547 1.76825 1.25896 1.50952 0.95728 0.94486 0.93724 0.93965 0.90805 0.92620 0.76386 0.81950 0.79526 0.77587 0.91319 0.88742 0.87466 0.93351 0.75341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.51 71.98 0.61 -5.28 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.98 2.24 44.24 0.10 15.08 16 4 H 0.00 -0.28 7.58 -2.39 -0.02 -0.29 16 5 C -0.55 -29.30 8.73 25.60 0.22 -29.08 16 6 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -53.21 11.30 21.45 0.24 -52.96 16 9 Si 0.97 42.18 29.54 68.60 2.03 44.20 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 13 N -0.70 -30.82 4.98 -449.29 -2.24 -33.06 16 14 C 0.54 24.35 6.34 86.69 0.55 24.90 16 15 O -0.56 -30.18 12.33 16.83 0.21 -29.97 16 16 C -0.23 -8.23 5.90 -19.91 -0.12 -8.35 16 17 C -0.01 -0.25 9.64 22.72 0.22 -0.03 16 18 C -0.20 -3.35 10.09 22.32 0.23 -3.13 16 19 C 0.16 2.88 11.17 84.71 0.95 3.82 16 20 N -0.56 -15.05 9.21 -308.00 -2.84 -17.89 16 21 C 0.35 12.09 7.51 85.13 0.64 12.73 16 22 O -0.29 -11.34 8.18 -62.54 -0.51 -11.85 16 23 C 0.06 1.65 5.69 71.98 0.41 2.06 16 24 C 0.08 1.83 7.43 71.98 0.53 2.37 16 25 O -0.59 -17.05 13.62 -144.34 -1.97 -19.01 16 26 H 0.02 1.29 7.84 -2.39 -0.02 1.27 16 27 H 0.04 1.81 5.64 -2.39 -0.01 1.80 16 28 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 4.20 5.95 -2.39 -0.01 4.19 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.40 14.53 6.64 -92.71 -0.62 13.92 16 33 H 0.16 3.23 6.52 -2.91 -0.02 3.21 16 34 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 35 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.07 1.88 8.10 -2.39 -0.02 1.86 16 37 H 0.09 2.19 8.10 -2.38 -0.02 2.17 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.40 7.27 9.12 -74.06 -0.68 6.60 16 Total: -1.00 -80.56 334.68 -0.33 -80.89 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -0.21 Total: 29.25 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 4.96 Total: 10.41 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -4.83 Total: -103.91 kcal Atomic # 8 Polarization: -58.57 SS G_CDS: -2.27 Total: -60.84 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -80.56 -0.33 -80.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624680717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.813 kcal (2) G-P(sol) polarization free energy of solvation -80.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds