Wall clock time and date at job start Tue Mar 31 2020 07:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47394 * 2 1 4 4 O 1.42902 * 109.47212 * 120.00462 * 2 1 3 5 5 C 1.53010 * 109.46744 * 239.99963 * 2 1 3 6 6 H 1.08994 * 109.47205 * 300.00153 * 5 2 1 7 7 C 1.53000 * 109.46725 * 60.00300 * 5 2 1 8 8 O 1.42898 * 109.47211 * 55.00070 * 7 5 2 9 9 N 1.46492 * 109.46954 * 180.02562 * 5 2 1 10 10 C 1.34777 * 120.00007 * 85.00505 * 9 5 2 11 11 O 1.21592 * 120.00081 * 359.97438 * 10 9 5 12 12 N 1.34780 * 120.00413 * 179.97438 * 10 9 5 13 13 C 1.39960 * 120.00231 * 174.81809 * 12 10 9 14 14 C 1.39286 * 119.94534 * 146.38665 * 13 12 10 15 15 C 1.38490 * 120.42681 * 179.97438 * 14 13 12 16 16 C 1.37675 * 120.32155 * 359.97438 * 15 14 13 17 17 C 1.40746 * 119.88767 * 0.02571 * 16 15 14 18 18 C 1.41399 * 120.21207 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00212 * 151.76834 * 18 17 16 20 20 C 1.39932 * 119.99989 * 331.76606 * 18 17 16 21 21 N 1.30826 * 120.00181 * 348.99349 * 20 18 17 22 22 Si 1.86806 * 120.00046 * 168.99316 * 20 18 17 23 23 H 1.48497 * 109.47002 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47117 * 119.99891 * 22 20 18 25 25 H 1.48501 * 109.47130 * 240.00063 * 22 20 18 26 26 C 1.38234 * 119.94282 * 326.11126 * 13 12 10 27 27 H 1.08994 * 109.47394 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46619 * 300.00270 * 1 2 3 29 29 H 1.09004 * 109.47258 * 59.99596 * 1 2 3 30 30 H 0.96690 * 114.00129 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.47374 * 294.99959 * 7 5 2 32 32 H 1.09004 * 109.47029 * 174.99829 * 7 5 2 33 33 H 0.96699 * 114.00026 * 179.97438 * 8 7 5 34 34 H 0.96997 * 120.00175 * 264.99940 * 9 5 2 35 35 H 0.97002 * 119.99455 * 354.82203 * 12 10 9 36 36 H 1.08004 * 119.78544 * 359.97438 * 14 13 12 37 37 H 1.08004 * 119.83406 * 180.02562 * 15 14 13 38 38 H 1.08000 * 120.05909 * 179.97438 * 16 15 14 39 39 H 0.97001 * 120.00342 * 180.02562 * 21 20 18 40 40 H 1.07996 * 120.16556 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0399 -0.7213 -1.2493 6 1 1.6766 -1.7489 -1.2493 7 6 1.5299 0.0000 -2.4985 8 8 1.9080 1.3769 -2.4412 9 7 3.5048 -0.7219 -1.2491 10 6 4.1782 -1.6784 -0.5797 11 8 3.5699 -2.5406 0.0244 12 7 5.5260 -1.6793 -0.5798 13 6 6.2254 -2.6058 0.2021 14 6 7.4431 -3.1137 -0.2442 15 6 8.1437 -4.0305 0.5217 16 6 7.6437 -4.4497 1.7340 17 6 6.4144 -3.9451 2.1980 18 6 5.8948 -4.3705 3.4424 19 1 5.2522 -3.7153 4.0116 20 6 6.2132 -5.6405 3.9362 21 7 6.8071 -6.5130 3.1632 22 14 5.7903 -6.0901 5.6993 23 1 5.1279 -4.9363 6.3591 24 1 4.8733 -7.2580 5.7060 25 1 7.0340 -6.4330 6.4347 26 6 5.7091 -3.0109 1.4188 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.9702 -0.7123 1.2327 31 1 0.4436 -0.0768 -2.5444 32 1 1.9645 -0.4594 -3.3863 33 1 1.6175 1.8966 -3.2032 34 1 3.9902 -0.0339 -1.7307 35 1 6.0113 -1.0377 -1.1219 36 1 7.8435 -2.7905 -1.1938 37 1 9.0872 -4.4178 0.1665 38 1 8.1934 -5.1651 2.3277 39 1 7.0275 -7.3934 3.5054 40 1 4.7674 -2.6139 1.7679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677653829.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:08 Heat of formation + Delta-G solvation = -106.369012 kcal Electronic energy + Delta-G solvation = -23865.980597 eV Core-core repulsion = 20259.641646 eV Total energy + Delta-G solvation = -3606.338951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.28800 -38.41166 -37.07001 -36.36554 -34.35653 -34.05351 -32.92628 -31.49284 -29.74177 -28.57282 -27.33559 -25.22411 -24.01312 -21.89874 -20.84992 -20.47480 -20.05476 -18.25108 -17.82906 -17.56752 -17.11943 -16.20032 -15.50744 -15.13438 -14.91680 -14.58486 -14.30439 -14.20010 -14.00919 -13.43796 -12.97380 -12.85846 -12.67822 -12.25664 -12.23623 -11.93749 -11.88512 -11.62480 -11.25403 -11.06392 -11.00731 -10.57654 -10.51450 -10.42592 -10.11620 -9.93239 -9.68230 -9.52263 -9.14552 -8.85441 -8.78079 -7.34594 -6.80836 -6.59220 -4.27061 2.76385 2.88541 3.03366 3.16153 3.22888 3.26196 3.67125 3.90640 4.04925 4.35046 4.53091 4.66174 4.75240 4.82223 5.02375 5.14607 5.31106 5.35620 5.68974 5.78334 5.79904 6.01616 6.12231 6.28058 6.44126 6.56795 6.81434 6.83705 7.10505 7.16587 7.20950 7.32067 7.41065 7.75277 7.87064 7.91653 8.05795 8.18023 8.32296 8.47133 8.74698 8.96199 9.04428 9.09024 10.34057 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.004103 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.376462 B = 6822.160722 C = 8014.750970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.094 3.906 3 H 0.060 0.940 4 O -0.553 6.553 5 C 0.134 3.866 6 H 0.107 0.893 7 C 0.068 3.932 8 O -0.569 6.569 9 N -0.748 5.748 10 C 0.687 3.313 11 O -0.549 6.549 12 N -0.681 5.681 13 C 0.166 3.834 14 C -0.261 4.261 15 C -0.094 4.094 16 C -0.169 4.169 17 C 0.119 3.881 18 C -0.456 4.456 19 H 0.077 0.923 20 C 0.073 3.927 21 N -0.802 5.802 22 Si 0.910 3.090 23 H -0.261 1.261 24 H -0.275 1.275 25 H -0.274 1.274 26 C -0.206 4.206 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.378 0.622 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.380 0.620 34 H 0.397 0.603 35 H 0.393 0.607 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.277 0.723 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 13.160 -11.116 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.033 3.967 3 H 0.078 0.922 4 O -0.360 6.360 5 C 0.027 3.973 6 H 0.124 0.876 7 C -0.010 4.010 8 O -0.375 6.375 9 N -0.406 5.406 10 C 0.387 3.613 11 O -0.424 6.424 12 N -0.327 5.327 13 C 0.074 3.926 14 C -0.283 4.283 15 C -0.113 4.113 16 C -0.189 4.189 17 C 0.116 3.884 18 C -0.486 4.486 19 H 0.095 0.905 20 C -0.143 4.143 21 N -0.428 5.428 22 Si 0.735 3.265 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.228 4.228 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.228 0.772 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.227 0.773 34 H 0.231 0.769 35 H 0.227 0.773 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.088 0.912 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.505 11.852 -9.860 17.607 hybrid contribution 0.646 0.481 -0.678 1.052 sum -7.860 12.333 -10.537 18.026 Atomic orbital electron populations 1.21774 0.93420 1.02815 1.02163 1.22055 0.94842 0.94953 0.84880 0.92218 1.86503 1.27532 1.79846 1.42169 1.21714 0.79855 1.01087 0.94602 0.87565 1.22516 0.99118 0.82165 0.97239 1.86498 1.81576 1.20704 1.48691 1.45190 1.06281 1.31482 1.57597 1.16148 0.82163 0.82307 0.80651 1.91079 1.67081 1.37577 1.46614 1.42623 1.04190 1.37071 1.48852 1.17227 0.92308 0.92548 0.90544 1.20014 0.98988 1.07709 1.01547 1.20457 0.98081 0.97123 0.95646 1.21400 0.96811 1.03837 0.96850 1.17510 0.89870 0.89099 0.91908 1.19588 1.26328 0.99558 1.03135 0.90482 1.25873 0.93202 0.96081 0.99123 1.69814 1.31919 1.05230 1.35864 0.86230 0.78830 0.79195 0.82253 1.18452 1.20047 1.19892 1.21000 1.01150 1.07008 0.93638 0.91774 0.91787 0.91385 0.77236 0.91653 0.92722 0.77259 0.76911 0.77322 0.89453 0.89110 0.86129 0.91165 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.21 37.16 0.34 -1.21 16 2 C 0.09 1.23 3.22 -26.73 -0.09 1.15 16 3 H 0.06 0.77 7.56 -51.93 -0.39 0.38 16 4 O -0.55 -9.81 12.46 -52.66 -0.66 -10.47 16 5 C 0.13 1.61 2.35 -67.93 -0.16 1.46 16 6 H 0.11 1.53 7.57 -51.93 -0.39 1.13 16 7 C 0.07 0.53 6.28 37.16 0.23 0.76 16 8 O -0.57 -4.05 12.51 -35.23 -0.44 -4.49 16 9 N -0.75 -9.70 4.97 -58.68 -0.29 -9.99 16 10 C 0.69 12.33 6.89 -86.91 -0.60 11.73 16 11 O -0.55 -12.55 12.09 -12.15 -0.15 -12.69 16 12 N -0.68 -12.09 5.35 -14.27 -0.08 -12.16 16 13 C 0.17 3.78 6.26 -83.76 -0.52 3.25 16 14 C -0.26 -5.80 9.97 -39.10 -0.39 -6.19 16 15 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 16 C -0.17 -4.51 8.66 -38.84 -0.34 -4.84 16 17 C 0.12 3.33 5.55 -106.85 -0.59 2.73 16 18 C -0.46 -12.79 9.06 -37.75 -0.34 -13.13 16 19 H 0.08 2.12 7.87 -52.49 -0.41 1.70 16 20 C 0.07 1.93 5.25 -17.35 -0.09 1.84 16 21 N -0.80 -21.66 10.81 55.55 0.60 -21.06 16 22 Si 0.91 19.74 29.57 -169.99 -5.03 14.72 16 23 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 C -0.21 -5.39 8.39 -38.68 -0.32 -5.71 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.54 6.54 -51.93 -0.34 0.20 16 30 H 0.38 6.97 6.54 45.56 0.30 7.27 16 31 H 0.07 0.40 6.71 -51.93 -0.35 0.05 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.38 0.99 9.12 45.56 0.42 1.41 16 34 H 0.40 4.13 8.40 -40.82 -0.34 3.79 16 35 H 0.39 5.39 8.83 -40.82 -0.36 5.03 16 36 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 37 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 38 H 0.12 3.31 6.18 -52.49 -0.32 2.98 16 39 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 40 H 0.11 2.92 6.44 -52.49 -0.34 2.58 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -33.64 330.82 -8.11 -41.75 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -3.79 Total: 20.19 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -3.27 Total: -10.79 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.23 Total: -43.21 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -1.24 Total: -27.65 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.64 -8.11 -41.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677653829.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.618 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds