Wall clock time and date at job start Tue Mar 31 2020 07:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47394 * 2 1 4 4 O 1.42902 * 109.47212 * 120.00462 * 2 1 3 5 5 C 1.53010 * 109.46744 * 239.99963 * 2 1 3 6 6 H 1.08994 * 109.47205 * 300.00153 * 5 2 1 7 7 C 1.53000 * 109.46725 * 60.00300 * 5 2 1 8 8 O 1.42898 * 109.47211 * 55.00070 * 7 5 2 9 9 N 1.46492 * 109.46954 * 180.02562 * 5 2 1 10 10 C 1.34777 * 120.00007 * 85.00505 * 9 5 2 11 11 O 1.21592 * 120.00081 * 359.97438 * 10 9 5 12 12 N 1.34780 * 120.00413 * 179.97438 * 10 9 5 13 13 C 1.39960 * 120.00231 * 174.81809 * 12 10 9 14 14 C 1.39286 * 119.94534 * 146.38665 * 13 12 10 15 15 C 1.38490 * 120.42681 * 179.97438 * 14 13 12 16 16 C 1.37675 * 120.32155 * 359.97438 * 15 14 13 17 17 C 1.40746 * 119.88767 * 0.02571 * 16 15 14 18 18 C 1.41399 * 120.21207 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00212 * 151.76834 * 18 17 16 20 20 C 1.39932 * 119.99989 * 331.76606 * 18 17 16 21 21 N 1.30826 * 120.00181 * 348.99349 * 20 18 17 22 22 Si 1.86806 * 120.00046 * 168.99316 * 20 18 17 23 23 H 1.48497 * 109.47002 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47117 * 119.99891 * 22 20 18 25 25 H 1.48501 * 109.47130 * 240.00063 * 22 20 18 26 26 C 1.38234 * 119.94282 * 326.11126 * 13 12 10 27 27 H 1.08994 * 109.47394 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46619 * 300.00270 * 1 2 3 29 29 H 1.09004 * 109.47258 * 59.99596 * 1 2 3 30 30 H 0.96690 * 114.00129 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.47374 * 294.99959 * 7 5 2 32 32 H 1.09004 * 109.47029 * 174.99829 * 7 5 2 33 33 H 0.96699 * 114.00026 * 179.97438 * 8 7 5 34 34 H 0.96997 * 120.00175 * 264.99940 * 9 5 2 35 35 H 0.97002 * 119.99455 * 354.82203 * 12 10 9 36 36 H 1.08004 * 119.78544 * 359.97438 * 14 13 12 37 37 H 1.08004 * 119.83406 * 180.02562 * 15 14 13 38 38 H 1.08000 * 120.05909 * 179.97438 * 16 15 14 39 39 H 0.97001 * 120.00342 * 180.02562 * 21 20 18 40 40 H 1.07996 * 120.16556 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0399 -0.7213 -1.2493 6 1 1.6766 -1.7489 -1.2493 7 6 1.5299 0.0000 -2.4985 8 8 1.9080 1.3769 -2.4412 9 7 3.5048 -0.7219 -1.2491 10 6 4.1782 -1.6784 -0.5797 11 8 3.5699 -2.5406 0.0244 12 7 5.5260 -1.6793 -0.5798 13 6 6.2254 -2.6058 0.2021 14 6 7.4431 -3.1137 -0.2442 15 6 8.1437 -4.0305 0.5217 16 6 7.6437 -4.4497 1.7340 17 6 6.4144 -3.9451 2.1980 18 6 5.8948 -4.3705 3.4424 19 1 5.2522 -3.7153 4.0116 20 6 6.2132 -5.6405 3.9362 21 7 6.8071 -6.5130 3.1632 22 14 5.7903 -6.0901 5.6993 23 1 5.1279 -4.9363 6.3591 24 1 4.8733 -7.2580 5.7060 25 1 7.0340 -6.4330 6.4347 26 6 5.7091 -3.0109 1.4188 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.9702 -0.7123 1.2327 31 1 0.4436 -0.0768 -2.5444 32 1 1.9645 -0.4594 -3.3863 33 1 1.6175 1.8966 -3.2032 34 1 3.9902 -0.0339 -1.7307 35 1 6.0113 -1.0377 -1.1219 36 1 7.8435 -2.7905 -1.1938 37 1 9.0872 -4.4178 0.1665 38 1 8.1934 -5.1651 2.3277 39 1 7.0275 -7.3934 3.5054 40 1 4.7674 -2.6139 1.7679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677653829.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:08 Heat of formation + Delta-G solvation = -134.621530 kcal Electronic energy + Delta-G solvation = -23867.205718 eV Core-core repulsion = 20259.641646 eV Total energy + Delta-G solvation = -3607.564072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68092 -39.72865 -38.61210 -37.29851 -36.12683 -35.30277 -34.70200 -32.60647 -31.70985 -30.01804 -28.55662 -27.21693 -24.93751 -23.48037 -22.72373 -21.68995 -21.53205 -19.63925 -19.31050 -18.90047 -18.02489 -17.58240 -17.14646 -16.51085 -16.40311 -16.34100 -15.55065 -15.52053 -15.14510 -14.79207 -14.66874 -14.47745 -14.00379 -13.62710 -13.50665 -13.12302 -13.06664 -12.98665 -12.83810 -12.77290 -12.53233 -12.19264 -12.03523 -11.97701 -11.56047 -11.36456 -11.26059 -11.00527 -10.83825 -10.68186 -9.98201 -9.32543 -8.65450 -8.54113 -6.35491 0.94967 1.05020 1.36563 1.49006 1.52143 1.64396 2.16377 2.23720 2.78801 3.18117 3.28703 3.41078 3.72813 3.77556 4.04247 4.15794 4.39327 4.47298 4.49394 4.57491 4.65799 4.79057 4.89258 5.02932 5.09798 5.14865 5.16064 5.20624 5.22829 5.36514 5.47807 5.73686 5.85959 6.08573 6.15386 6.20109 6.40285 6.60167 6.73159 6.94301 6.98332 7.04058 7.10813 7.61185 8.39795 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.004103 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.376462 B = 6822.160722 C = 8014.750970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.084 3.916 3 H 0.066 0.934 4 O -0.582 6.582 5 C 0.129 3.871 6 H 0.081 0.919 7 C 0.081 3.919 8 O -0.581 6.581 9 N -0.722 5.722 10 C 0.686 3.314 11 O -0.601 6.601 12 N -0.668 5.668 13 C 0.175 3.825 14 C -0.248 4.248 15 C -0.093 4.093 16 C -0.194 4.194 17 C 0.088 3.912 18 C -0.501 4.501 19 H 0.063 0.937 20 C 0.033 3.967 21 N -0.833 5.833 22 Si 0.983 3.017 23 H -0.264 1.264 24 H -0.267 1.267 25 H -0.257 1.257 26 C -0.230 4.230 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.369 0.631 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.403 0.597 34 H 0.414 0.586 35 H 0.417 0.583 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.286 0.714 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 14.695 -13.401 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.024 3.976 3 H 0.084 0.916 4 O -0.388 6.388 5 C 0.023 3.977 6 H 0.099 0.901 7 C 0.003 3.997 8 O -0.391 6.391 9 N -0.380 5.380 10 C 0.387 3.613 11 O -0.479 6.479 12 N -0.317 5.317 13 C 0.081 3.919 14 C -0.269 4.269 15 C -0.112 4.112 16 C -0.215 4.215 17 C 0.085 3.915 18 C -0.531 4.531 19 H 0.081 0.919 20 C -0.180 4.180 21 N -0.460 5.460 22 Si 0.804 3.196 23 H -0.188 1.188 24 H -0.192 1.192 25 H -0.181 1.181 26 C -0.252 4.252 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.217 0.783 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.254 0.746 34 H 0.251 0.749 35 H 0.255 0.745 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.618 13.478 -12.234 20.139 hybrid contribution 0.647 0.160 -0.157 0.684 sum -7.971 13.638 -12.391 20.076 Atomic orbital electron populations 1.21819 0.91500 1.02670 1.03803 1.22395 0.96393 0.94838 0.83930 0.91580 1.86497 1.26784 1.80761 1.44792 1.21821 0.78785 1.00458 0.96589 0.90134 1.22338 1.00250 0.82380 0.94740 1.86437 1.81927 1.20296 1.50415 1.44968 1.06813 1.30212 1.56014 1.16319 0.82022 0.82552 0.80400 1.91060 1.68077 1.40005 1.48749 1.42345 1.04282 1.36699 1.48387 1.17259 0.92595 0.92408 0.89661 1.20453 0.97970 1.05932 1.02533 1.20831 0.99199 0.96721 0.94430 1.21352 0.96820 1.04780 0.98504 1.17842 0.90861 0.90218 0.92593 1.19773 1.28105 1.00866 1.04359 0.91861 1.26695 0.92706 0.95250 1.03377 1.69861 1.32640 1.05764 1.37690 0.85151 0.79161 0.78678 0.76603 1.18768 1.19205 1.18097 1.20958 1.00785 1.08001 0.95441 0.92791 0.92150 0.87737 0.78276 0.89303 0.91355 0.74582 0.74868 0.74521 0.85045 0.85930 0.87721 0.90315 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.21 71.98 0.66 -2.17 16 2 C 0.08 2.17 3.22 30.60 0.10 2.26 16 3 H 0.07 1.61 7.56 -2.39 -0.02 1.60 16 4 O -0.58 -21.55 12.46 -132.31 -1.65 -23.20 16 5 C 0.13 2.96 2.35 45.00 0.11 3.07 16 6 H 0.08 2.32 7.57 -2.39 -0.02 2.30 16 7 C 0.08 0.97 6.28 71.98 0.45 1.42 16 8 O -0.58 -5.94 12.51 -148.98 -1.86 -7.80 16 9 N -0.72 -17.69 4.97 -457.81 -2.28 -19.97 16 10 C 0.69 24.53 6.89 179.05 1.23 25.77 16 11 O -0.60 -28.53 12.09 12.66 0.15 -28.38 16 12 N -0.67 -22.84 5.35 -317.31 -1.70 -24.54 16 13 C 0.17 7.89 6.26 38.09 0.24 8.12 16 14 C -0.25 -10.42 9.97 22.58 0.23 -10.19 16 15 C -0.09 -4.30 10.02 22.20 0.22 -4.08 16 16 C -0.19 -10.67 8.66 22.75 0.20 -10.47 16 17 C 0.09 5.14 5.55 -21.31 -0.12 5.02 16 18 C -0.50 -29.88 9.06 23.46 0.21 -29.66 16 19 H 0.06 3.76 7.87 -2.91 -0.02 3.74 16 20 C 0.03 1.80 5.25 85.25 0.45 2.24 16 21 N -0.83 -46.51 10.81 21.82 0.24 -46.27 16 22 Si 0.98 41.84 29.57 68.60 2.03 43.87 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 26 C -0.23 -12.56 8.39 22.85 0.19 -12.37 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.31 6.54 -2.39 -0.02 1.30 16 30 H 0.37 14.49 6.54 -74.06 -0.48 14.01 16 31 H 0.09 0.70 6.71 -2.39 -0.02 0.68 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.40 0.29 9.12 -74.06 -0.68 -0.38 16 34 H 0.41 7.44 8.40 -92.71 -0.78 6.66 16 35 H 0.42 10.17 8.83 -92.71 -0.82 9.35 16 36 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 37 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 38 H 0.10 5.98 6.18 -2.91 -0.02 5.96 16 39 H 0.29 14.37 8.30 -92.71 -0.77 13.60 16 40 H 0.09 5.08 6.44 -2.91 -0.02 5.06 16 Total: -1.00 -78.84 330.82 -2.53 -81.38 By element: Atomic # 1 Polarization: 47.59 SS G_CDS: -1.64 Total: 45.95 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 4.17 Total: -21.03 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -3.74 Total: -90.78 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: -3.36 Total: -59.39 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -78.84 -2.53 -81.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677653829.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.245 kcal (2) G-P(sol) polarization free energy of solvation -78.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds