Wall clock time and date at job start Tue Mar 31 2020 07:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46698 * 2 1 4 4 C 1.50693 * 109.47169 * 119.99707 * 2 1 3 5 5 O 1.21278 * 120.00092 * 120.00209 * 4 2 1 6 6 N 1.34780 * 120.00188 * 300.00393 * 4 2 1 7 7 C 1.46504 * 119.99814 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.46941 * 180.02562 * 7 6 4 9 9 O 1.42905 * 113.28091 * 313.06421 * 8 7 6 10 10 C 1.53495 * 114.20669 * 180.02562 * 8 7 6 11 11 N 1.47066 * 87.98658 * 220.34216 * 10 8 7 12 12 C 1.36937 * 136.06113 * 206.85859 * 11 10 8 13 13 H 1.07995 * 120.00001 * 0.02562 * 12 11 10 14 14 C 1.38817 * 120.00320 * 179.97438 * 12 11 10 15 15 N 1.31620 * 119.99557 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99975 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47363 * 60.00463 * 16 14 12 18 18 H 1.48506 * 109.46719 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47174 * 300.00290 * 16 14 12 20 20 C 1.47067 * 87.88528 * 27.11900 * 11 10 8 21 21 C 1.50697 * 109.47327 * 240.00267 * 2 1 3 22 22 C 1.34510 * 125.79500 * 119.99849 * 21 2 1 23 23 C 1.41380 * 106.84328 * 180.02562 * 22 21 2 24 24 C 1.34512 * 106.84085 * 359.97438 * 23 22 21 25 25 O 1.34305 * 125.78486 * 299.68960 * 21 2 1 26 26 H 1.09001 * 109.47012 * 60.00305 * 1 2 3 27 27 H 1.08997 * 109.46798 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47254 * 299.99889 * 1 2 3 29 29 H 0.96992 * 119.99879 * 359.97438 * 6 4 2 30 30 H 1.09003 * 109.47373 * 59.99924 * 7 6 4 31 31 H 1.08997 * 109.47135 * 299.99923 * 7 6 4 32 32 H 0.96696 * 113.99817 * 46.93921 * 9 8 7 33 33 H 1.09005 * 113.46950 * 105.56781 * 10 8 7 34 34 H 1.08994 * 113.52293 * 335.13266 * 10 8 7 35 35 H 0.96999 * 119.99537 * 179.97438 * 15 14 12 36 36 H 1.09007 * 113.46858 * 87.65629 * 20 11 10 37 37 H 1.08993 * 113.47208 * 218.09965 * 20 11 10 38 38 H 1.07999 * 126.57424 * 359.95898 * 22 21 2 39 39 H 1.07997 * 126.57940 * 180.02562 * 23 22 21 40 40 H 1.07999 * 125.79136 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7297 -1.6963 1.1192 6 7 1.7067 -0.2498 2.4546 7 6 2.1956 -0.9402 3.6508 8 6 1.6849 -0.2194 4.9000 9 8 1.8560 1.1983 4.8437 10 6 2.1361 -0.8553 6.2221 11 7 0.7867 -0.5969 6.7468 12 6 0.2325 -0.3853 7.9810 13 1 0.8578 -0.3883 8.8615 14 6 -1.1331 -0.1659 8.1003 15 7 -1.8951 -0.1617 7.0272 16 14 -1.8889 0.1235 9.7839 17 1 -1.2769 1.3275 10.4010 18 1 -3.3525 0.3299 9.6404 19 1 -1.6384 -1.0575 10.6486 20 6 0.2935 -0.6723 5.3634 21 6 2.0324 -0.7103 -1.2305 22 6 2.8090 -0.1719 -2.1877 23 6 3.0378 -1.1847 -3.1473 24 6 2.3879 -2.2816 -2.7188 25 8 1.7855 -1.9901 -1.5543 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.1494 0.5389 2.5435 30 1 3.2856 -0.9397 3.6506 31 1 1.8327 -1.9679 3.6509 32 1 1.5712 1.5960 4.0096 33 1 2.9158 -0.2896 6.7322 34 1 2.3727 -1.9158 6.1363 35 1 -2.8493 -0.0087 7.1106 36 1 0.0389 -1.6842 5.0478 37 1 -0.4935 0.0489 5.1432 38 1 3.1846 0.8402 -2.2180 39 1 3.6229 -1.0951 -4.0506 40 1 2.3593 -3.2362 -3.2230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699917651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:47 Heat of formation + Delta-G solvation = -3.333292 kcal Electronic energy + Delta-G solvation = -23527.371675 eV Core-core repulsion = 19925.500688 eV Total energy + Delta-G solvation = -3601.870987 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.68938 -39.99937 -38.75070 -35.05535 -34.44717 -33.90408 -32.94907 -32.03773 -29.05588 -28.36539 -26.21199 -24.84585 -24.47999 -22.16717 -21.87025 -21.11641 -20.08068 -19.39594 -18.08834 -17.18806 -16.74899 -16.19740 -15.97781 -15.54079 -15.42532 -14.79653 -14.48456 -14.12217 -13.95323 -13.72102 -13.43285 -13.18003 -12.92005 -12.78292 -12.75950 -12.51462 -12.25949 -11.94495 -11.86318 -11.70040 -11.09580 -10.90713 -10.72499 -10.48134 -10.06567 -10.00054 -9.75680 -9.52997 -9.19574 -8.91144 -8.84833 -8.58864 -6.92333 -5.79168 -3.10997 1.61657 2.47129 2.56764 2.86285 3.15673 3.39680 3.43131 3.44396 4.29470 4.42019 4.45246 4.55391 4.72497 4.80749 4.93949 4.97680 5.04790 5.19442 5.29459 5.38708 5.47011 5.58285 5.67737 5.73784 5.74861 5.85687 5.96712 6.02533 6.27150 6.36276 6.37108 6.50647 6.51567 6.96628 7.05418 7.12698 7.39610 7.46741 7.93172 8.06939 8.18182 9.00838 9.67614 10.58335 11.38588 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.035871 B = 0.002973 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.383121 B = 9416.147860 C = 9680.390703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.031 4.031 3 H 0.126 0.874 4 C 0.516 3.484 5 O -0.528 6.528 6 N -0.722 5.722 7 C 0.108 3.892 8 C 0.057 3.943 9 O -0.521 6.521 10 C 0.134 3.866 11 N -0.600 5.600 12 C -0.214 4.214 13 H 0.082 0.918 14 C -0.008 4.008 15 N -0.922 5.922 16 Si 0.915 3.085 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.137 3.863 21 C 0.016 3.984 22 C -0.210 4.210 23 C -0.217 4.217 24 C -0.038 4.038 25 O -0.159 6.159 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.398 0.602 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.359 0.641 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.254 0.746 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.618 1.274 -19.794 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.052 4.052 3 H 0.143 0.857 4 C 0.301 3.699 5 O -0.403 6.403 6 N -0.375 5.375 7 C -0.017 4.017 8 C 0.014 3.986 9 O -0.324 6.324 10 C 0.007 3.993 11 N -0.325 5.325 12 C -0.342 4.342 13 H 0.100 0.900 14 C -0.204 4.204 15 N -0.569 5.569 16 Si 0.746 3.254 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.211 1.211 20 C 0.010 3.990 21 C -0.035 4.035 22 C -0.229 4.229 23 C -0.237 4.237 24 C -0.107 4.107 25 O -0.054 6.054 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.233 0.767 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.205 0.795 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 6.897 0.326 -18.782 20.011 hybrid contribution -0.760 0.553 0.131 0.950 sum 6.137 0.879 -18.651 19.654 Atomic orbital electron populations 1.21841 0.91008 1.04002 1.03632 1.19923 0.98423 0.99228 0.87620 0.85653 1.20324 0.80499 0.84823 0.84228 1.90742 1.37304 1.25753 1.86544 1.45897 1.53702 1.32282 1.05654 1.21956 0.99583 0.97173 0.82950 1.23429 1.00671 0.81440 0.93049 1.86654 1.86930 1.18796 1.40050 1.22382 0.91153 0.96633 0.89153 1.45266 1.02245 1.82271 1.02682 1.18867 0.91073 1.41771 0.82442 0.90029 1.24784 0.95850 1.02239 0.97575 1.69801 1.04665 1.55544 1.26875 0.86147 0.78135 0.78139 0.83025 1.21015 1.21538 1.21146 1.22746 0.93154 0.98429 0.84629 1.21551 1.01759 0.82757 0.97448 1.21525 1.03757 1.01376 0.96221 1.21760 1.05786 0.93662 1.02446 1.24028 0.99193 1.00766 0.86679 1.84046 1.59230 1.27441 1.34660 0.90830 0.91249 0.90593 0.76663 0.91004 0.90152 0.79466 0.93045 0.93285 0.93635 0.94907 0.90520 0.83536 0.83581 0.78278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.07 37.16 0.34 -0.91 16 2 C -0.03 -0.30 3.13 -92.93 -0.29 -0.59 16 3 H 0.13 0.86 8.10 -51.93 -0.42 0.44 16 4 C 0.52 6.89 7.15 -10.99 -0.08 6.81 16 5 O -0.53 -9.31 15.79 -1.67 -0.03 -9.34 16 6 N -0.72 -8.88 5.23 -60.29 -0.32 -9.19 16 7 C 0.11 1.62 5.43 -4.04 -0.02 1.59 16 8 C 0.06 1.03 1.73 -90.11 -0.16 0.87 16 9 O -0.52 -9.29 13.56 -35.23 -0.48 -9.77 16 10 C 0.13 2.77 8.11 -8.51 -0.07 2.70 16 11 N -0.60 -15.50 3.78 -184.75 -0.70 -16.20 16 12 C -0.21 -6.09 10.75 -15.06 -0.16 -6.25 16 13 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 14 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 15 N -0.92 -27.14 11.51 55.49 0.64 -26.50 16 16 Si 0.92 22.20 29.55 -169.99 -5.02 17.18 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.14 3.10 6.83 -8.51 -0.06 3.04 16 21 C 0.02 0.19 5.21 -35.63 -0.19 0.01 16 22 C -0.21 -2.21 10.78 -39.70 -0.43 -2.64 16 23 C -0.22 -2.14 10.91 -39.70 -0.43 -2.57 16 24 C -0.04 -0.39 12.09 29.42 0.36 -0.04 16 25 O -0.16 -2.10 10.33 -1.54 -0.02 -2.12 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.55 7.56 -51.93 -0.39 0.16 16 29 H 0.40 3.90 6.37 -40.82 -0.26 3.64 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 32 H 0.36 4.59 7.20 45.56 0.33 4.92 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.03 0.76 7.93 -51.93 -0.41 0.34 16 37 H 0.08 1.92 7.12 -51.93 -0.37 1.55 16 38 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.20 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -36.50 340.91 -6.93 -43.43 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.86 Total: 5.67 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.29 Total: 1.69 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.38 Total: -51.89 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.52 Total: -21.22 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.50 -6.93 -43.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699917651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.101 kcal (2) G-P(sol) polarization free energy of solvation -36.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds