Wall clock time and date at job start Tue Mar 31 2020 07:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46698 * 2 1 4 4 C 1.50693 * 109.47169 * 119.99707 * 2 1 3 5 5 O 1.21278 * 120.00092 * 120.00209 * 4 2 1 6 6 N 1.34780 * 120.00188 * 300.00393 * 4 2 1 7 7 C 1.46504 * 119.99814 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.46941 * 180.02562 * 7 6 4 9 9 O 1.42905 * 113.28091 * 313.06421 * 8 7 6 10 10 C 1.53495 * 114.20669 * 180.02562 * 8 7 6 11 11 N 1.47066 * 87.98658 * 220.34216 * 10 8 7 12 12 C 1.36937 * 136.06113 * 206.85859 * 11 10 8 13 13 H 1.07995 * 120.00001 * 0.02562 * 12 11 10 14 14 C 1.38817 * 120.00320 * 179.97438 * 12 11 10 15 15 N 1.31620 * 119.99557 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99975 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47363 * 60.00463 * 16 14 12 18 18 H 1.48506 * 109.46719 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47174 * 300.00290 * 16 14 12 20 20 C 1.47067 * 87.88528 * 27.11900 * 11 10 8 21 21 C 1.50697 * 109.47327 * 240.00267 * 2 1 3 22 22 C 1.34510 * 125.79500 * 119.99849 * 21 2 1 23 23 C 1.41380 * 106.84328 * 180.02562 * 22 21 2 24 24 C 1.34512 * 106.84085 * 359.97438 * 23 22 21 25 25 O 1.34305 * 125.78486 * 299.68960 * 21 2 1 26 26 H 1.09001 * 109.47012 * 60.00305 * 1 2 3 27 27 H 1.08997 * 109.46798 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47254 * 299.99889 * 1 2 3 29 29 H 0.96992 * 119.99879 * 359.97438 * 6 4 2 30 30 H 1.09003 * 109.47373 * 59.99924 * 7 6 4 31 31 H 1.08997 * 109.47135 * 299.99923 * 7 6 4 32 32 H 0.96696 * 113.99817 * 46.93921 * 9 8 7 33 33 H 1.09005 * 113.46950 * 105.56781 * 10 8 7 34 34 H 1.08994 * 113.52293 * 335.13266 * 10 8 7 35 35 H 0.96999 * 119.99537 * 179.97438 * 15 14 12 36 36 H 1.09007 * 113.46858 * 87.65629 * 20 11 10 37 37 H 1.08993 * 113.47208 * 218.09965 * 20 11 10 38 38 H 1.07999 * 126.57424 * 359.95898 * 22 21 2 39 39 H 1.07997 * 126.57940 * 180.02562 * 23 22 21 40 40 H 1.07999 * 125.79136 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7297 -1.6963 1.1192 6 7 1.7067 -0.2498 2.4546 7 6 2.1956 -0.9402 3.6508 8 6 1.6849 -0.2194 4.9000 9 8 1.8560 1.1983 4.8437 10 6 2.1361 -0.8553 6.2221 11 7 0.7867 -0.5969 6.7468 12 6 0.2325 -0.3853 7.9810 13 1 0.8578 -0.3883 8.8615 14 6 -1.1331 -0.1659 8.1003 15 7 -1.8951 -0.1617 7.0272 16 14 -1.8889 0.1235 9.7839 17 1 -1.2769 1.3275 10.4010 18 1 -3.3525 0.3299 9.6404 19 1 -1.6384 -1.0575 10.6486 20 6 0.2935 -0.6723 5.3634 21 6 2.0324 -0.7103 -1.2305 22 6 2.8090 -0.1719 -2.1877 23 6 3.0378 -1.1847 -3.1473 24 6 2.3879 -2.2816 -2.7188 25 8 1.7855 -1.9901 -1.5543 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.1494 0.5389 2.5435 30 1 3.2856 -0.9397 3.6506 31 1 1.8327 -1.9679 3.6509 32 1 1.5712 1.5960 4.0096 33 1 2.9158 -0.2896 6.7322 34 1 2.3727 -1.9158 6.1363 35 1 -2.8493 -0.0087 7.1106 36 1 0.0389 -1.6842 5.0478 37 1 -0.4935 0.0489 5.1432 38 1 3.1846 0.8402 -2.2180 39 1 3.6229 -1.0951 -4.0506 40 1 2.3593 -3.2362 -3.2230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699917651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:47 Heat of formation + Delta-G solvation = -31.385536 kcal Electronic energy + Delta-G solvation = -23528.588112 eV Core-core repulsion = 19925.500688 eV Total energy + Delta-G solvation = -3603.087424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.47945 -41.26151 -40.19185 -36.61346 -35.45375 -35.00020 -34.06442 -33.71855 -30.41955 -29.43030 -27.81106 -26.55547 -25.45078 -23.83180 -22.66173 -22.11913 -21.17464 -20.84053 -19.20998 -18.63271 -18.02162 -17.40402 -17.13078 -16.82221 -16.61085 -16.27520 -15.77186 -15.59671 -15.24958 -14.99545 -14.80333 -14.39746 -14.19926 -13.87727 -13.65555 -13.55549 -13.43924 -13.27647 -13.01374 -12.79808 -12.60428 -12.53673 -12.48121 -12.27502 -11.79136 -11.39593 -10.97938 -10.89990 -10.75819 -10.67779 -10.17365 -9.36342 -8.95072 -7.92074 -5.25006 0.81890 1.45416 1.49154 1.54141 1.54971 1.71168 2.08664 2.20398 2.46259 3.03953 3.29475 3.33996 3.53065 3.56154 3.74155 3.90940 4.00269 4.14641 4.24789 4.34372 4.39103 4.67578 4.73139 4.75961 4.76938 4.81389 4.92860 4.97583 5.05013 5.14979 5.17257 5.24771 5.29117 5.32125 5.46995 5.66830 5.90591 6.28579 6.40051 6.83437 6.89628 7.14567 7.57451 8.56169 9.25087 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.035871 B = 0.002973 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.383121 B = 9416.147860 C = 9680.390703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 H 0.163 0.837 4 C 0.516 3.484 5 O -0.574 6.574 6 N -0.712 5.712 7 C 0.123 3.877 8 C 0.096 3.904 9 O -0.535 6.535 10 C 0.126 3.874 11 N -0.635 5.635 12 C -0.231 4.231 13 H 0.083 0.917 14 C -0.066 4.066 15 N -0.950 5.950 16 Si 0.982 3.018 17 H -0.277 1.277 18 H -0.292 1.292 19 H -0.278 1.278 20 C 0.135 3.865 21 C -0.013 4.013 22 C -0.212 4.212 23 C -0.226 4.226 24 C -0.052 4.052 25 O -0.190 6.190 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.412 0.588 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.383 0.617 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.249 0.751 36 H 0.026 0.974 37 H 0.049 0.951 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.387 2.368 -20.760 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.044 4.044 3 H 0.180 0.820 4 C 0.303 3.697 5 O -0.453 6.453 6 N -0.366 5.366 7 C -0.003 4.003 8 C 0.053 3.947 9 O -0.342 6.342 10 C 0.000 4.000 11 N -0.360 5.360 12 C -0.359 4.359 13 H 0.101 0.899 14 C -0.259 4.259 15 N -0.599 5.599 16 Si 0.809 3.191 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.204 1.204 20 C 0.009 3.991 21 C -0.064 4.064 22 C -0.231 4.231 23 C -0.245 4.245 24 C -0.119 4.119 25 O -0.086 6.086 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.250 0.750 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.232 0.768 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.187 0.813 39 H 0.187 0.813 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 7.681 1.452 -19.774 21.263 hybrid contribution -0.937 0.199 0.365 1.025 sum 6.744 1.651 -19.409 20.614 Atomic orbital electron populations 1.21848 0.90050 1.03030 1.05204 1.20039 0.99052 1.00220 0.85048 0.82011 1.20956 0.79455 0.84203 0.85050 1.90721 1.39495 1.27872 1.87181 1.45760 1.53589 1.32449 1.04796 1.21615 0.99846 0.96337 0.82464 1.22799 0.96684 0.81832 0.93387 1.86604 1.86813 1.18502 1.42270 1.22620 0.89163 0.98007 0.90187 1.45631 1.04785 1.82691 1.02922 1.19255 0.91631 1.41174 0.83877 0.89924 1.25631 0.96340 1.02697 1.01202 1.69979 1.04424 1.56777 1.28696 0.85109 0.76838 0.78242 0.78865 1.20264 1.21761 1.20375 1.22745 0.94967 0.97438 0.83990 1.21989 1.03024 0.82726 0.98613 1.21931 1.02831 1.02518 0.95838 1.22156 1.05783 0.93339 1.03187 1.24743 0.98788 1.02287 0.86063 1.84025 1.60209 1.28455 1.35938 0.89007 0.93488 0.89252 0.75006 0.90133 0.91067 0.76772 0.92829 0.91327 0.94197 0.95659 0.93300 0.81301 0.81250 0.75575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.07 71.98 0.65 -1.54 16 2 C -0.02 -0.41 3.13 -12.29 -0.04 -0.45 16 3 H 0.16 1.63 8.10 -2.38 -0.02 1.62 16 4 C 0.52 13.11 7.15 87.65 0.63 13.74 16 5 O -0.57 -20.05 15.79 3.89 0.06 -19.99 16 6 N -0.71 -16.28 5.23 -463.06 -2.42 -18.71 16 7 C 0.12 3.51 5.43 86.38 0.47 3.98 16 8 C 0.10 3.36 1.73 -10.46 -0.02 3.34 16 9 O -0.54 -18.14 13.56 -148.98 -2.02 -20.16 16 10 C 0.13 5.12 8.11 83.18 0.67 5.80 16 11 N -0.63 -33.03 3.78 -738.90 -2.79 -35.82 16 12 C -0.23 -13.25 10.75 84.03 0.90 -12.35 16 13 H 0.08 4.54 7.83 -2.91 -0.02 4.51 16 14 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 15 N -0.95 -56.93 11.51 21.65 0.25 -56.68 16 16 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 C 0.13 6.17 6.83 83.18 0.57 6.74 16 21 C -0.01 -0.29 5.21 24.83 0.13 -0.16 16 22 C -0.21 -4.05 10.78 22.19 0.24 -3.81 16 23 C -0.23 -4.05 10.91 22.19 0.24 -3.80 16 24 C -0.05 -1.01 12.09 66.97 0.81 -0.20 16 25 O -0.19 -4.99 10.33 4.37 0.05 -4.94 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 1.10 7.56 -2.39 -0.02 1.08 16 29 H 0.41 7.10 6.37 -92.71 -0.59 6.51 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 2.22 7.89 -2.39 -0.02 2.20 16 32 H 0.38 8.82 7.20 -74.06 -0.53 8.29 16 33 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.07 2.54 8.10 -2.39 -0.02 2.52 16 35 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.03 1.19 7.93 -2.38 -0.02 1.18 16 37 H 0.05 2.49 7.12 -2.39 -0.02 2.48 16 38 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 39 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.23 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -80.39 340.91 0.81 -79.57 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.06 Total: 20.77 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 5.72 Total: 7.99 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -4.97 Total: -111.21 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.91 Total: -45.09 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -80.39 0.81 -79.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699917651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.187 kcal (2) G-P(sol) polarization free energy of solvation -80.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds