Wall clock time and date at job start Tue Mar 31 2020 07:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35492 * 126.97830 * 2 1 4 4 N 1.30521 * 107.30559 * 179.83698 * 3 2 1 5 5 N 1.28587 * 109.67548 * 0.43860 * 4 3 2 6 6 C 1.30528 * 109.67168 * 359.72276 * 5 4 3 7 7 C 1.50699 * 126.34670 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.46963 * 269.95457 * 7 6 5 9 9 C 1.42896 * 114.00087 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47097 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99778 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99806 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99716 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46998 * 178.27807 * 13 12 10 15 15 C 1.50700 * 115.54644 * 65.14372 * 14 13 12 16 16 H 1.07993 * 120.00067 * 265.40337 * 15 14 13 17 17 C 1.37877 * 119.99649 * 85.40406 * 15 14 13 18 18 N 1.31516 * 120.00521 * 353.55992 * 17 15 14 19 19 Si 1.86805 * 119.99901 * 173.55355 * 17 15 14 20 20 H 1.48505 * 109.46716 * 60.00136 * 19 17 15 21 21 H 1.48496 * 109.47320 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47047 * 300.00431 * 19 17 15 23 23 C 1.52997 * 117.50032 * 279.47711 * 14 13 12 24 24 C 1.52999 * 117.50136 * 210.81469 * 14 13 12 25 25 H 1.09000 * 109.47196 * 269.68818 * 1 2 3 26 26 H 1.09004 * 109.47249 * 149.68838 * 1 2 3 27 27 H 1.09004 * 109.47469 * 29.68649 * 1 2 3 28 28 H 1.08000 * 126.34983 * 359.97438 * 3 2 1 29 29 H 1.08995 * 109.47412 * 29.95747 * 7 6 5 30 30 H 1.08996 * 109.46982 * 149.95964 * 7 6 5 31 31 H 1.09003 * 109.47241 * 299.99902 * 9 8 7 32 32 H 1.08999 * 109.47350 * 60.00008 * 9 8 7 33 33 H 0.97000 * 119.99942 * 0.02562 * 12 10 9 34 34 H 1.08995 * 109.47522 * 298.28563 * 13 12 10 35 35 H 1.09005 * 109.46964 * 58.28584 * 13 12 10 36 36 H 0.96998 * 120.00488 * 185.07112 * 18 17 15 37 37 H 1.09000 * 117.50335 * 359.97438 * 23 14 13 38 38 H 1.09001 * 117.49675 * 145.02425 * 23 14 13 39 39 H 1.08999 * 117.49808 * 214.98291 * 24 14 13 40 40 H 1.09003 * 117.49418 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2799 1.0824 0.0000 4 7 3.5090 0.6430 0.0035 5 7 3.5091 -0.6429 -0.0035 6 6 2.2800 -1.0823 -0.0060 7 6 1.8477 -2.5260 -0.0133 8 8 1.7102 -2.9751 -1.3630 9 6 1.3010 -4.3389 -1.4829 10 6 1.1881 -4.7032 -2.9408 11 8 1.4344 -3.8764 -3.7933 12 7 0.8144 -5.9481 -3.2974 13 6 0.7041 -6.3021 -4.7147 14 6 0.3084 -7.7744 -4.8433 15 6 -1.0580 -8.1286 -4.3155 16 1 -1.1680 -8.4994 -3.3072 17 6 -2.1678 -7.9792 -5.1200 18 7 -2.0528 -7.4104 -6.3002 19 14 -3.8348 -8.5848 -4.5336 20 1 -4.2037 -7.8812 -3.2790 21 1 -4.8565 -8.3076 -5.5749 22 1 -3.7693 -10.0466 -4.2804 23 6 1.4159 -8.8193 -4.6942 24 6 0.8106 -8.5363 -6.0714 25 1 -0.3633 -0.0056 1.0276 26 1 -0.3634 -0.8872 -0.5187 27 1 -0.3634 0.8928 -0.5090 28 1 1.9701 2.1170 -0.0004 29 1 2.5962 -3.1321 0.4968 30 1 0.8912 -2.6214 0.5005 31 1 2.0379 -4.9830 -1.0031 32 1 0.3330 -4.4717 -0.9996 33 1 0.6178 -6.6095 -2.6156 34 1 -0.0554 -5.6790 -5.1868 35 1 1.6638 -6.1397 -5.2055 36 1 -2.8435 -7.2386 -6.8350 37 1 2.4267 -8.4579 -4.5048 38 1 1.1562 -9.7631 -4.2148 39 1 0.1529 -9.2940 -6.4973 40 1 1.4227 -7.9885 -6.7879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326327708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:59 Heat of formation + Delta-G solvation = 29.269221 kcal Electronic energy + Delta-G solvation = -22853.809116 eV Core-core repulsion = 19285.644631 eV Total energy + Delta-G solvation = -3568.164485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.33323 -39.35098 -37.73964 -36.60419 -35.30189 -33.35778 -32.03609 -31.86239 -28.88720 -27.99792 -26.73327 -25.76330 -24.69542 -22.63044 -21.27935 -21.23554 -19.95817 -19.39841 -17.63799 -17.25574 -16.86019 -16.47236 -16.26331 -15.86954 -15.31507 -15.01328 -14.76346 -14.56078 -14.25416 -13.80076 -13.76212 -13.29497 -13.04982 -12.67657 -12.49619 -12.07953 -11.73958 -11.68284 -11.61161 -11.05753 -10.98241 -10.61179 -10.60181 -10.46900 -10.31380 -9.97948 -9.71811 -9.59358 -9.30789 -9.03341 -8.55915 -8.35152 -8.14749 -6.13607 -4.23150 1.40378 2.17320 2.57260 3.08553 3.20471 3.21219 3.28035 3.28702 3.89984 4.20630 4.29006 4.32936 4.44766 4.56174 4.65782 4.83509 4.98484 5.04809 5.13357 5.17053 5.19481 5.29393 5.36654 5.58451 5.84835 5.97840 6.28950 6.41658 6.51537 6.51744 6.65191 6.72991 6.83404 7.05299 7.21342 7.37562 7.43490 7.74848 8.19526 8.27545 8.49576 8.76637 8.80072 9.43949 10.94122 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.002960 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.503595 B = 9456.504402 C =10157.263049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.468 5.468 3 C 0.153 3.847 4 N -0.298 5.298 5 N -0.272 5.272 6 C 0.178 3.822 7 C 0.148 3.852 8 O -0.356 6.356 9 C 0.045 3.955 10 C 0.504 3.496 11 O -0.535 6.535 12 N -0.701 5.701 13 C 0.165 3.835 14 C 0.027 3.973 15 C -0.504 4.504 16 H 0.060 0.940 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.210 4.210 24 C -0.148 4.148 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.221 0.779 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.401 0.599 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.263 0.737 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 10.218 14.874 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.159 5.159 3 C -0.134 4.134 4 N -0.138 5.138 5 N -0.115 5.115 6 C -0.089 4.089 7 C 0.069 3.931 8 O -0.273 6.273 9 C -0.035 4.035 10 C 0.288 3.712 11 O -0.412 6.412 12 N -0.351 5.351 13 C 0.042 3.958 14 C 0.026 3.974 15 C -0.541 4.541 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.509 5.509 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.237 0.763 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.235 0.765 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.962 10.925 13.863 17.897 hybrid contribution -2.709 -0.630 0.678 2.863 sum 0.253 10.295 14.542 17.819 Atomic orbital electron populations 1.22204 0.74927 1.06123 1.04161 1.46183 1.09498 1.06697 1.53550 1.26486 0.87216 0.94954 1.04734 1.74282 1.18122 1.03152 1.18199 1.74270 1.16950 1.03254 1.16994 1.24317 0.87381 0.91479 1.05741 1.20501 1.00981 0.85944 0.85710 1.88097 1.89317 1.26376 1.23494 1.22326 1.00959 0.83741 0.96489 1.20002 0.78533 0.83035 0.89666 1.90711 1.49449 1.49084 1.51996 1.45856 1.67479 1.11320 1.10464 1.21019 0.98768 0.97350 0.78622 1.19021 0.92614 0.86968 0.98758 1.20305 0.89374 1.45357 0.99079 0.92190 1.24997 0.98920 0.94583 0.94529 1.69963 1.29548 1.40591 1.10814 0.86686 0.83590 0.79489 0.78355 1.20287 1.21267 1.20163 1.23033 0.97075 1.02041 1.02612 1.22498 1.02210 1.03849 0.90018 0.89731 0.88483 0.88610 0.76294 0.89152 0.91070 0.89928 0.90058 0.76544 0.90885 0.94315 0.92711 0.91565 0.90309 0.89784 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 10.89 59.84 0.65 1.00 16 2 N -0.47 -4.50 3.15 -122.69 -0.39 -4.89 16 3 C 0.15 1.52 12.74 -89.95 -1.15 0.37 16 4 N -0.30 -4.29 12.21 29.69 0.36 -3.92 16 5 N -0.27 -4.24 12.21 32.80 0.40 -3.84 16 6 C 0.18 2.23 7.66 -154.98 -1.19 1.04 16 7 C 0.15 1.51 6.11 36.01 0.22 1.73 16 8 O -0.36 -5.13 9.86 -55.14 -0.54 -5.67 16 9 C 0.04 0.56 6.42 36.01 0.23 0.79 16 10 C 0.50 9.18 7.91 -10.98 -0.09 9.09 16 11 O -0.54 -12.39 16.50 -14.35 -0.24 -12.62 16 12 N -0.70 -12.87 5.48 -60.29 -0.33 -13.20 16 13 C 0.17 3.66 5.50 -4.04 -0.02 3.63 16 14 C 0.03 0.62 1.38 -155.66 -0.21 0.40 16 15 C -0.50 -12.47 8.63 -34.44 -0.30 -12.77 16 16 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 17 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 18 N -0.87 -23.71 12.91 55.43 0.72 -22.99 16 19 Si 0.89 19.85 29.55 -169.99 -5.02 14.82 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.21 -4.23 9.96 -26.69 -0.27 -4.49 16 24 C -0.15 -3.30 9.42 -26.69 -0.25 -3.55 16 25 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.10 0.55 7.81 -51.93 -0.41 0.15 16 27 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.22 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.48 7.86 -51.93 -0.41 0.07 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.40 6.41 8.36 -40.82 -0.34 6.07 16 34 H 0.07 1.87 8.14 -51.93 -0.42 1.44 16 35 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 39 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -35.75 352.93 -7.96 -43.71 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.77 Total: 4.23 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.46 Total: -0.94 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.76 Total: -48.85 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.78 Total: -18.30 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.75 -7.96 -43.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326327708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.979 kcal (2) G-P(sol) polarization free energy of solvation -35.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds