Wall clock time and date at job start Tue Mar 31 2020 07:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35492 * 126.97830 * 2 1 4 4 N 1.30521 * 107.30559 * 179.83698 * 3 2 1 5 5 N 1.28587 * 109.67548 * 0.43860 * 4 3 2 6 6 C 1.30528 * 109.67168 * 359.72276 * 5 4 3 7 7 C 1.50699 * 126.34670 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.46963 * 269.95457 * 7 6 5 9 9 C 1.42896 * 114.00087 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47097 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99778 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99806 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99716 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46998 * 178.27807 * 13 12 10 15 15 C 1.50700 * 115.54644 * 65.14372 * 14 13 12 16 16 H 1.07993 * 120.00067 * 265.40337 * 15 14 13 17 17 C 1.37877 * 119.99649 * 85.40406 * 15 14 13 18 18 N 1.31516 * 120.00521 * 353.55992 * 17 15 14 19 19 Si 1.86805 * 119.99901 * 173.55355 * 17 15 14 20 20 H 1.48505 * 109.46716 * 60.00136 * 19 17 15 21 21 H 1.48496 * 109.47320 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47047 * 300.00431 * 19 17 15 23 23 C 1.52997 * 117.50032 * 279.47711 * 14 13 12 24 24 C 1.52999 * 117.50136 * 210.81469 * 14 13 12 25 25 H 1.09000 * 109.47196 * 269.68818 * 1 2 3 26 26 H 1.09004 * 109.47249 * 149.68838 * 1 2 3 27 27 H 1.09004 * 109.47469 * 29.68649 * 1 2 3 28 28 H 1.08000 * 126.34983 * 359.97438 * 3 2 1 29 29 H 1.08995 * 109.47412 * 29.95747 * 7 6 5 30 30 H 1.08996 * 109.46982 * 149.95964 * 7 6 5 31 31 H 1.09003 * 109.47241 * 299.99902 * 9 8 7 32 32 H 1.08999 * 109.47350 * 60.00008 * 9 8 7 33 33 H 0.97000 * 119.99942 * 0.02562 * 12 10 9 34 34 H 1.08995 * 109.47522 * 298.28563 * 13 12 10 35 35 H 1.09005 * 109.46964 * 58.28584 * 13 12 10 36 36 H 0.96998 * 120.00488 * 185.07112 * 18 17 15 37 37 H 1.09000 * 117.50335 * 359.97438 * 23 14 13 38 38 H 1.09001 * 117.49675 * 145.02425 * 23 14 13 39 39 H 1.08999 * 117.49808 * 214.98291 * 24 14 13 40 40 H 1.09003 * 117.49418 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2799 1.0824 0.0000 4 7 3.5090 0.6430 0.0035 5 7 3.5091 -0.6429 -0.0035 6 6 2.2800 -1.0823 -0.0060 7 6 1.8477 -2.5260 -0.0133 8 8 1.7102 -2.9751 -1.3630 9 6 1.3010 -4.3389 -1.4829 10 6 1.1881 -4.7032 -2.9408 11 8 1.4344 -3.8764 -3.7933 12 7 0.8144 -5.9481 -3.2974 13 6 0.7041 -6.3021 -4.7147 14 6 0.3084 -7.7744 -4.8433 15 6 -1.0580 -8.1286 -4.3155 16 1 -1.1680 -8.4994 -3.3072 17 6 -2.1678 -7.9792 -5.1200 18 7 -2.0528 -7.4104 -6.3002 19 14 -3.8348 -8.5848 -4.5336 20 1 -4.2037 -7.8812 -3.2790 21 1 -4.8565 -8.3076 -5.5749 22 1 -3.7693 -10.0466 -4.2804 23 6 1.4159 -8.8193 -4.6942 24 6 0.8106 -8.5363 -6.0714 25 1 -0.3633 -0.0056 1.0276 26 1 -0.3634 -0.8872 -0.5187 27 1 -0.3634 0.8928 -0.5090 28 1 1.9701 2.1170 -0.0004 29 1 2.5962 -3.1321 0.4968 30 1 0.8912 -2.6214 0.5005 31 1 2.0379 -4.9830 -1.0031 32 1 0.3330 -4.4717 -0.9996 33 1 0.6178 -6.6095 -2.6156 34 1 -0.0554 -5.6790 -5.1868 35 1 1.6638 -6.1397 -5.2055 36 1 -2.8435 -7.2386 -6.8350 37 1 2.4267 -8.4579 -4.5048 38 1 1.1562 -9.7631 -4.2148 39 1 0.1529 -9.2940 -6.4973 40 1 1.4227 -7.9885 -6.7879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326327708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:59 Heat of formation + Delta-G solvation = 5.327560 kcal Electronic energy + Delta-G solvation = -22854.847304 eV Core-core repulsion = 19285.644631 eV Total energy + Delta-G solvation = -3569.202673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.14276 -40.75278 -38.93220 -38.22322 -36.01646 -34.97697 -33.95803 -32.72035 -30.05795 -28.59870 -27.92356 -27.36181 -26.17064 -23.40629 -22.97244 -22.06116 -21.45651 -21.13858 -18.65999 -18.33436 -17.94219 -17.61674 -17.36677 -17.02419 -16.61859 -16.29122 -16.16625 -15.91346 -15.50361 -15.23515 -14.67066 -14.28271 -14.26999 -13.81457 -13.63610 -13.49072 -13.11442 -12.99494 -12.90997 -12.75840 -12.59106 -12.37468 -12.03607 -11.48408 -11.45673 -11.14702 -10.92200 -10.85203 -10.82819 -10.46020 -10.42826 -10.05615 -9.84831 -8.08032 -6.22180 0.62131 1.45458 1.48188 1.52835 1.54232 1.68173 1.71009 2.10057 2.44355 2.95019 3.20264 3.43179 3.55736 3.67248 3.85104 3.88063 3.97779 4.21066 4.25950 4.27320 4.34255 4.38883 4.56214 4.59121 4.65506 4.68880 4.73538 4.86627 5.00468 5.03302 5.08868 5.27690 5.56643 5.59630 5.66376 5.79127 5.85742 5.94727 6.37524 6.76618 6.86401 7.38445 7.48088 7.64140 8.99392 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.002960 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.503595 B = 9456.504402 C =10157.263049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.466 5.466 3 C 0.168 3.832 4 N -0.351 5.351 5 N -0.325 5.325 6 C 0.165 3.835 7 C 0.147 3.853 8 O -0.395 6.395 9 C 0.056 3.944 10 C 0.498 3.502 11 O -0.594 6.594 12 N -0.693 5.693 13 C 0.180 3.820 14 C 0.008 3.992 15 C -0.506 4.506 16 H 0.070 0.930 17 C 0.023 3.977 18 N -0.910 5.910 19 Si 0.952 3.048 20 H -0.266 1.266 21 H -0.295 1.295 22 H -0.271 1.271 23 C -0.174 4.174 24 C -0.164 4.164 25 H 0.112 0.888 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.266 0.734 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.415 0.585 34 H 0.028 0.972 35 H 0.031 0.969 36 H 0.258 0.742 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 9.896 17.733 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.156 5.156 3 C -0.121 4.121 4 N -0.191 5.191 5 N -0.167 5.167 6 C -0.104 4.104 7 C 0.069 3.931 8 O -0.313 6.313 9 C -0.023 4.023 10 C 0.284 3.716 11 O -0.475 6.475 12 N -0.344 5.344 13 C 0.056 3.944 14 C 0.007 3.993 15 C -0.543 4.543 16 H 0.088 0.912 17 C -0.177 4.177 18 N -0.548 5.548 19 Si 0.778 3.222 20 H -0.190 1.190 21 H -0.222 1.222 22 H -0.196 1.196 23 C -0.212 4.212 24 C -0.202 4.202 25 H 0.131 0.869 26 H 0.110 0.890 27 H 0.135 0.865 28 H 0.281 0.719 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.252 0.748 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.799 10.571 16.782 19.915 hybrid contribution -2.360 -0.472 -0.213 2.416 sum -0.561 10.099 16.569 19.412 Atomic orbital electron populations 1.22564 0.72184 1.06957 1.06260 1.46473 1.11043 1.05762 1.52350 1.27332 0.86167 0.96706 1.01863 1.74148 1.20898 1.03166 1.20838 1.74136 1.19296 1.04172 1.19099 1.24755 0.87245 0.93098 1.05324 1.20800 1.03494 0.84710 0.84094 1.88028 1.89845 1.27182 1.26270 1.22331 1.04215 0.83836 0.91896 1.21096 0.76547 0.81856 0.92054 1.90685 1.51818 1.50592 1.54369 1.45691 1.67375 1.12208 1.09129 1.20543 0.96766 0.96337 0.80754 1.19047 0.93189 0.87617 0.99435 1.20673 0.90184 1.44144 0.99339 0.91201 1.25748 1.02411 0.94881 0.94696 1.70111 1.30038 1.42442 1.12186 0.85711 0.79467 0.79108 0.77905 1.19045 1.22157 1.19630 1.23022 0.97143 1.01183 0.99803 1.22442 1.02830 1.03885 0.91062 0.86921 0.89010 0.86517 0.71875 0.87889 0.86938 0.86324 0.86090 0.74823 0.95320 0.95064 0.93275 0.89341 0.89258 0.91794 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.89 127.77 1.39 1.81 16 2 N -0.47 -8.01 3.15 -542.07 -1.71 -9.71 16 3 C 0.17 3.05 12.74 180.11 2.30 5.35 16 4 N -0.35 -10.17 12.21 -59.99 -0.73 -10.90 16 5 N -0.32 -10.24 12.21 -50.15 -0.61 -10.86 16 6 C 0.16 3.95 7.66 137.98 1.06 5.00 16 7 C 0.15 2.63 6.11 71.24 0.44 3.07 16 8 O -0.40 -10.65 9.86 -129.94 -1.28 -11.93 16 9 C 0.06 1.24 6.42 71.24 0.46 1.69 16 10 C 0.50 17.67 7.91 87.66 0.69 18.36 16 11 O -0.59 -28.07 16.50 16.00 0.26 -27.80 16 12 N -0.69 -24.68 5.48 -463.05 -2.54 -27.22 16 13 C 0.18 8.10 5.50 86.38 0.48 8.58 16 14 C 0.01 0.35 1.38 -52.93 -0.07 0.28 16 15 C -0.51 -24.58 8.63 25.60 0.22 -24.36 16 16 H 0.07 3.19 7.82 -2.91 -0.02 3.17 16 17 C 0.02 1.19 5.39 84.65 0.46 1.65 16 18 N -0.91 -50.57 12.91 21.45 0.28 -50.29 16 19 Si 0.95 40.33 29.55 68.60 2.03 42.35 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 21 H -0.30 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 23 C -0.17 -6.66 9.96 30.62 0.30 -6.35 16 24 C -0.16 -7.36 9.42 30.62 0.29 -7.07 16 25 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.09 0.78 7.81 -2.39 -0.02 0.76 16 27 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 28 H 0.27 1.75 8.06 -2.91 -0.02 1.73 16 29 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.11 1.02 7.86 -2.39 -0.02 1.00 16 31 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.42 12.24 8.36 -92.71 -0.78 11.46 16 34 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.03 1.42 8.09 -2.38 -0.02 1.40 16 36 H 0.26 13.94 8.32 -92.71 -0.77 13.17 16 37 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -83.00 352.93 3.98 -79.02 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.28 Total: 19.33 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 8.00 Total: 8.00 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -5.31 Total: -108.97 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -1.02 Total: -39.74 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.35 kcal Total: -83.00 3.98 -79.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326327708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.348 kcal (2) G-P(sol) polarization free energy of solvation -82.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds