Wall clock time and date at job start Tue Mar 31 2020 07:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36732 * 127.13705 * 2 1 4 4 C 1.50694 * 126.35052 * 359.94557 * 3 2 1 5 5 C 1.53007 * 109.47380 * 90.00155 * 4 3 2 6 6 C 1.50696 * 109.47081 * 180.02562 * 5 4 3 7 7 H 1.07996 * 120.00558 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99797 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99558 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00168 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47049 * 90.00348 * 10 8 6 12 12 H 1.48503 * 109.47175 * 209.99975 * 10 8 6 13 13 H 1.48497 * 109.47346 * 330.00303 * 10 8 6 14 14 N 1.30300 * 107.30658 * 179.97438 * 3 2 1 15 15 N 1.28534 * 110.05049 * 359.72283 * 14 3 2 16 16 C 1.31215 * 109.85929 * 0.45986 * 15 14 3 17 17 N 1.38579 * 126.47225 * 179.82157 * 16 15 14 18 18 C 1.48539 * 110.99939 * 117.07860 * 17 16 15 19 19 C 1.54932 * 103.22489 * 200.27698 * 18 17 16 20 20 C 1.54598 * 102.92273 * 37.41993 * 19 18 17 21 21 H 1.09002 * 110.31174 * 96.95391 * 20 19 18 22 22 C 1.50702 * 110.39117 * 219.08242 * 20 19 18 23 23 O 1.20825 * 120.00044 * 117.15268 * 22 20 19 24 24 O 1.34227 * 119.99923 * 297.14651 * 22 20 19 25 25 C 1.47897 * 110.99735 * 359.68659 * 17 16 15 26 26 H 1.09006 * 109.46791 * 270.02114 * 1 2 3 27 27 H 1.08999 * 109.47377 * 30.02078 * 1 2 3 28 28 H 1.08997 * 109.47632 * 150.03230 * 1 2 3 29 29 H 1.09006 * 109.47419 * 210.00308 * 4 3 2 30 30 H 1.08998 * 109.46915 * 330.00148 * 4 3 2 31 31 H 1.09002 * 109.46258 * 300.00375 * 5 4 3 32 32 H 1.09001 * 109.46616 * 59.99999 * 5 4 3 33 33 H 0.97006 * 119.99503 * 179.97438 * 9 8 6 34 34 H 1.08999 * 110.66816 * 318.71460 * 18 17 16 35 35 H 1.09005 * 110.66277 * 81.67735 * 18 17 16 36 36 H 1.08994 * 110.72994 * 279.05876 * 19 18 17 37 37 H 1.09002 * 110.72359 * 155.77140 * 19 18 17 38 38 H 0.96700 * 117.00201 * 180.02562 * 24 22 20 39 39 H 1.08997 * 109.92227 * 26.48894 * 25 17 16 40 40 H 1.09000 * 110.07910 * 265.28523 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0900 0.0000 4 6 1.8622 2.5348 -0.0012 5 6 1.7161 3.0247 1.4410 6 6 1.2872 4.4693 1.4398 7 1 1.1345 4.9865 0.5041 8 6 1.0898 5.1308 2.6333 9 7 1.2763 4.5011 3.7728 10 14 0.5588 6.9217 2.6319 11 1 -0.9243 6.9983 2.6301 12 1 1.0878 7.5958 3.8448 13 1 1.0906 7.5948 1.4198 14 7 3.5162 0.6480 0.0006 15 7 3.5211 -0.6373 0.0067 16 6 2.2888 -1.0878 0.0006 17 7 1.8977 -2.4173 0.0009 18 6 1.1349 -2.7475 1.2319 19 6 1.2492 -4.2903 1.3166 20 6 2.6916 -4.5574 0.8284 21 1 3.3647 -4.6670 1.6788 22 6 2.7339 -5.7928 -0.0336 23 8 3.0622 -5.7092 -1.1934 24 8 2.4069 -6.9860 0.4870 25 6 3.0728 -3.3154 0.0016 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5133 29 1 2.6125 3.1359 -0.5148 30 1 0.9060 2.6299 -0.5157 31 1 0.9658 2.4236 1.9545 32 1 2.6723 2.9296 1.9555 33 1 1.1377 4.9666 4.6125 34 1 1.5910 -2.2795 2.1043 35 1 0.0935 -2.4412 1.1329 36 1 0.5243 -4.7677 0.6573 37 1 1.1206 -4.6308 2.3440 38 1 2.4494 -7.7497 -0.1047 39 1 3.9246 -2.8120 0.4589 40 1 3.3195 -3.6098 -1.0184 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600912708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:03 Heat of formation + Delta-G solvation = -6.221716 kcal Electronic energy + Delta-G solvation = -23489.246308 eV Core-core repulsion = 19919.542821 eV Total energy + Delta-G solvation = -3569.703487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.65795 -40.90553 -38.78585 -36.46857 -34.88368 -34.10807 -32.87175 -31.38111 -29.67762 -28.19867 -27.32667 -25.26279 -24.60956 -22.49970 -21.93107 -21.07100 -20.32191 -19.69388 -18.51024 -17.53200 -17.39533 -16.58664 -16.13569 -15.87057 -15.68999 -15.04335 -14.53222 -14.19644 -13.75419 -13.62454 -13.45900 -13.09596 -12.92227 -12.84507 -12.52888 -12.26882 -12.17143 -11.99766 -11.82518 -11.34519 -11.31052 -11.05513 -11.00666 -10.79400 -10.69908 -10.37053 -10.06784 -9.91793 -9.80816 -9.36021 -9.22639 -8.43679 -8.01694 -6.08204 -4.12215 1.83855 2.06147 2.45000 2.65730 3.22100 3.27459 3.34735 3.38250 3.71399 3.93375 4.08150 4.39100 4.59102 4.74103 4.83795 4.93040 4.97080 5.02065 5.18542 5.22936 5.28058 5.34334 5.38374 5.44129 5.53232 5.58748 5.72411 5.78842 6.07225 6.18137 6.33340 6.42127 6.47751 6.64245 6.88040 7.36692 7.52177 7.52361 7.66409 7.89331 8.26968 8.93920 9.16895 9.52543 11.02932 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.036576 B = 0.002928 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.335761 B = 9559.638888 C = 9806.996390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.479 5.479 3 C 0.215 3.785 4 C -0.031 4.031 5 C 0.033 3.967 6 C -0.524 4.524 7 H 0.059 0.941 8 C 0.059 3.941 9 N -0.893 5.893 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.272 1.272 14 N -0.294 5.294 15 N -0.321 5.321 16 C 0.324 3.676 17 N -0.431 5.431 18 C 0.031 3.969 19 C -0.105 4.105 20 C -0.095 4.095 21 H 0.122 0.878 22 C 0.490 3.510 23 O -0.506 6.506 24 O -0.515 6.515 25 C 0.053 3.947 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.013 0.987 32 H 0.025 0.975 33 H 0.262 0.738 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.411 0.589 39 H 0.091 0.909 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -21.304 -4.664 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.173 5.173 3 C -0.053 4.053 4 C -0.071 4.071 5 C -0.006 4.006 6 C -0.562 4.562 7 H 0.077 0.923 8 C -0.143 4.143 9 N -0.532 5.532 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.197 1.197 14 N -0.133 5.133 15 N -0.165 5.165 16 C -0.033 4.033 17 N -0.155 5.155 18 C -0.096 4.096 19 C -0.143 4.143 20 C -0.115 4.115 21 H 0.140 0.860 22 C 0.331 3.669 23 O -0.393 6.393 24 O -0.327 6.327 25 C -0.074 4.074 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.270 0.730 39 H 0.109 0.891 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.403 -20.995 -5.009 21.717 hybrid contribution -1.341 0.493 0.364 1.474 sum -3.743 -20.502 -4.645 21.352 Atomic orbital electron populations 1.22067 0.75621 1.04848 1.04015 1.46038 1.08607 1.05721 1.56975 1.25596 0.86102 0.92405 1.01180 1.20455 1.00863 0.82545 1.03242 1.19063 0.97812 0.95885 0.87801 1.21146 1.46449 0.96047 0.92585 0.92266 1.25014 0.95369 0.98325 0.95565 1.69976 1.48989 1.36842 0.97345 0.86549 0.78684 0.84821 0.77700 1.20668 1.21167 1.19705 1.74008 1.17670 1.01819 1.19770 1.74420 1.15551 1.04283 1.22264 1.22481 0.87374 0.87247 1.06187 1.61552 1.20564 0.97298 1.36062 1.23496 0.99875 0.95528 0.90660 1.22455 0.93778 0.95070 1.02995 1.21897 1.00998 0.90030 0.98570 0.85989 1.23111 0.72386 0.84550 0.86828 1.90738 1.43653 1.86241 1.18624 1.84524 1.81419 1.18316 1.48422 1.22928 0.91821 0.89236 1.03391 0.90184 0.88715 0.89450 0.89223 0.91193 0.96820 0.95641 0.92868 0.91719 0.88629 0.89672 0.88679 0.73020 0.89101 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 9.91 59.85 0.59 1.53 16 2 N -0.48 -7.99 3.21 -121.46 -0.39 -8.38 16 3 C 0.21 4.27 7.32 -154.02 -1.13 3.15 16 4 C -0.03 -0.63 5.53 -27.88 -0.15 -0.78 16 5 C 0.03 0.82 4.95 -27.88 -0.14 0.68 16 6 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 7 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.64 5.46 -17.81 -0.10 1.54 16 9 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 10 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 14 N -0.29 -6.43 12.18 32.99 0.40 -6.03 16 15 N -0.32 -6.41 10.69 30.31 0.32 -6.08 16 16 C 0.32 5.46 7.04 -318.87 -2.24 3.21 16 17 N -0.43 -5.62 5.32 -170.55 -0.91 -6.53 16 18 C 0.03 0.31 6.03 -1.90 -0.01 0.30 16 19 C -0.10 -0.75 6.59 -24.87 -0.16 -0.92 16 20 C -0.10 -0.80 3.49 -90.41 -0.32 -1.12 16 21 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 22 C 0.49 4.40 7.50 36.01 0.27 4.67 16 23 O -0.51 -6.29 16.00 -18.75 -0.30 -6.59 16 24 O -0.51 -3.17 13.41 -39.25 -0.53 -3.69 16 25 C 0.05 0.64 6.08 -2.75 -0.02 0.62 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.09 1.08 7.25 -51.93 -0.38 0.70 16 28 H 0.09 0.85 7.93 -51.93 -0.41 0.43 16 29 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 30 H 0.07 1.25 7.27 -51.93 -0.38 0.87 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.06 0.72 7.99 -51.93 -0.42 0.30 16 35 H 0.10 0.81 7.24 -51.93 -0.38 0.43 16 36 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.41 0.90 9.10 45.56 0.41 1.32 16 39 H 0.09 1.22 6.84 -51.93 -0.36 0.86 16 40 H 0.11 1.51 6.42 -51.93 -0.33 1.18 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -35.63 336.78 -9.04 -44.67 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.72 Total: -1.34 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -3.72 Total: -1.60 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.17 Total: -52.50 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.83 Total: -10.28 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.63 -9.04 -44.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600912708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.447 kcal (2) G-P(sol) polarization free energy of solvation -35.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds