Wall clock time and date at job start Tue Mar 31 2020 07:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36732 * 127.13705 * 2 1 4 4 C 1.50694 * 126.35052 * 359.94557 * 3 2 1 5 5 C 1.53007 * 109.47380 * 90.00155 * 4 3 2 6 6 C 1.50696 * 109.47081 * 180.02562 * 5 4 3 7 7 H 1.07996 * 120.00558 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99797 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99558 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00168 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47049 * 90.00348 * 10 8 6 12 12 H 1.48503 * 109.47175 * 209.99975 * 10 8 6 13 13 H 1.48497 * 109.47346 * 330.00303 * 10 8 6 14 14 N 1.30300 * 107.30658 * 179.97438 * 3 2 1 15 15 N 1.28534 * 110.05049 * 359.72283 * 14 3 2 16 16 C 1.31215 * 109.85929 * 0.45986 * 15 14 3 17 17 N 1.38579 * 126.47225 * 179.82157 * 16 15 14 18 18 C 1.48539 * 110.99939 * 117.07860 * 17 16 15 19 19 C 1.54932 * 103.22489 * 200.27698 * 18 17 16 20 20 C 1.54598 * 102.92273 * 37.41993 * 19 18 17 21 21 H 1.09002 * 110.31174 * 96.95391 * 20 19 18 22 22 C 1.50702 * 110.39117 * 219.08242 * 20 19 18 23 23 O 1.20825 * 120.00044 * 117.15268 * 22 20 19 24 24 O 1.34227 * 119.99923 * 297.14651 * 22 20 19 25 25 C 1.47897 * 110.99735 * 359.68659 * 17 16 15 26 26 H 1.09006 * 109.46791 * 270.02114 * 1 2 3 27 27 H 1.08999 * 109.47377 * 30.02078 * 1 2 3 28 28 H 1.08997 * 109.47632 * 150.03230 * 1 2 3 29 29 H 1.09006 * 109.47419 * 210.00308 * 4 3 2 30 30 H 1.08998 * 109.46915 * 330.00148 * 4 3 2 31 31 H 1.09002 * 109.46258 * 300.00375 * 5 4 3 32 32 H 1.09001 * 109.46616 * 59.99999 * 5 4 3 33 33 H 0.97006 * 119.99503 * 179.97438 * 9 8 6 34 34 H 1.08999 * 110.66816 * 318.71460 * 18 17 16 35 35 H 1.09005 * 110.66277 * 81.67735 * 18 17 16 36 36 H 1.08994 * 110.72994 * 279.05876 * 19 18 17 37 37 H 1.09002 * 110.72359 * 155.77140 * 19 18 17 38 38 H 0.96700 * 117.00201 * 180.02562 * 24 22 20 39 39 H 1.08997 * 109.92227 * 26.48894 * 25 17 16 40 40 H 1.09000 * 110.07910 * 265.28523 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0900 0.0000 4 6 1.8622 2.5348 -0.0012 5 6 1.7161 3.0247 1.4410 6 6 1.2872 4.4693 1.4398 7 1 1.1345 4.9865 0.5041 8 6 1.0898 5.1308 2.6333 9 7 1.2763 4.5011 3.7728 10 14 0.5588 6.9217 2.6319 11 1 -0.9243 6.9983 2.6301 12 1 1.0878 7.5958 3.8448 13 1 1.0906 7.5948 1.4198 14 7 3.5162 0.6480 0.0006 15 7 3.5211 -0.6373 0.0067 16 6 2.2888 -1.0878 0.0006 17 7 1.8977 -2.4173 0.0009 18 6 1.1349 -2.7475 1.2319 19 6 1.2492 -4.2903 1.3166 20 6 2.6916 -4.5574 0.8284 21 1 3.3647 -4.6670 1.6788 22 6 2.7339 -5.7928 -0.0336 23 8 3.0622 -5.7092 -1.1934 24 8 2.4069 -6.9860 0.4870 25 6 3.0728 -3.3154 0.0016 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5133 29 1 2.6125 3.1359 -0.5148 30 1 0.9060 2.6299 -0.5157 31 1 0.9658 2.4236 1.9545 32 1 2.6723 2.9296 1.9555 33 1 1.1377 4.9666 4.6125 34 1 1.5910 -2.2795 2.1043 35 1 0.0935 -2.4412 1.1329 36 1 0.5243 -4.7677 0.6573 37 1 1.1206 -4.6308 2.3440 38 1 2.4494 -7.7497 -0.1047 39 1 3.9246 -2.8120 0.4589 40 1 3.3195 -3.6098 -1.0184 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600912708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:03 Heat of formation + Delta-G solvation = -29.812187 kcal Electronic energy + Delta-G solvation = -23490.269268 eV Core-core repulsion = 19919.542821 eV Total energy + Delta-G solvation = -3570.726447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.04879 -41.65518 -39.67197 -37.12328 -36.39731 -35.72103 -34.25073 -32.96020 -30.56653 -29.72391 -28.44521 -27.10422 -25.50615 -23.81401 -23.26332 -22.12107 -21.62192 -20.83256 -19.18770 -18.71701 -18.42128 -18.15460 -17.41651 -17.15726 -16.56837 -16.45467 -15.96951 -15.15753 -15.10097 -14.95731 -14.39552 -14.31348 -14.19833 -14.02679 -13.72709 -13.56976 -13.19533 -12.90156 -12.84585 -12.81098 -12.60150 -12.53232 -12.36624 -12.03718 -11.96086 -11.81298 -11.59961 -11.47241 -11.31141 -11.14404 -10.70471 -10.55811 -9.38718 -8.19792 -6.31670 0.72028 1.15767 1.23865 1.43835 1.45781 1.56578 1.75092 2.00859 2.42838 2.63153 3.13416 3.14730 3.31332 3.52657 3.76888 3.92041 4.03320 4.08267 4.13436 4.25494 4.27807 4.39225 4.52139 4.59763 4.66430 4.69546 4.71357 4.85346 4.88883 4.91483 4.94785 5.03096 5.37345 5.44277 5.48016 5.60538 5.61151 5.79398 6.10028 6.18113 6.84158 6.97489 7.38316 7.71194 8.92250 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.036576 B = 0.002928 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.335761 B = 9559.638888 C = 9806.996390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.476 5.476 3 C 0.198 3.802 4 C -0.015 4.015 5 C 0.045 3.955 6 C -0.539 4.539 7 H 0.072 0.928 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.967 3.033 11 H -0.268 1.268 12 H -0.288 1.288 13 H -0.262 1.262 14 N -0.333 5.333 15 N -0.358 5.358 16 C 0.341 3.659 17 N -0.430 5.430 18 C 0.027 3.973 19 C -0.091 4.091 20 C -0.090 4.090 21 H 0.144 0.856 22 C 0.500 3.500 23 O -0.547 6.547 24 O -0.503 6.503 25 C 0.052 3.948 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.098 0.902 31 H -0.002 1.002 32 H -0.018 1.018 33 H 0.263 0.737 34 H 0.052 0.948 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.430 0.570 39 H 0.072 0.928 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 -22.320 -4.747 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.170 5.170 3 C -0.071 4.071 4 C -0.054 4.054 5 C 0.006 3.994 6 C -0.577 4.577 7 H 0.090 0.910 8 C -0.196 4.196 9 N -0.574 5.574 10 Si 0.791 3.209 11 H -0.194 1.194 12 H -0.213 1.213 13 H -0.186 1.186 14 N -0.171 5.171 15 N -0.203 5.203 16 C -0.016 4.016 17 N -0.154 5.154 18 C -0.099 4.099 19 C -0.129 4.129 20 C -0.110 4.110 21 H 0.162 0.838 22 C 0.343 3.657 23 O -0.437 6.437 24 O -0.317 6.317 25 C -0.075 4.075 26 H 0.106 0.894 27 H 0.122 0.878 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.016 0.984 32 H 0.000 1.000 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.143 0.857 38 H 0.292 0.708 39 H 0.090 0.910 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.641 -22.053 -5.096 23.105 hybrid contribution -0.673 0.640 0.399 1.011 sum -5.314 -21.413 -4.696 22.557 Atomic orbital electron populations 1.22448 0.72852 1.06808 1.05175 1.46200 1.10109 1.04621 1.56081 1.25355 0.86399 0.92909 1.02410 1.20160 1.02273 0.82889 1.00124 1.18820 0.94781 0.95447 0.90310 1.21598 1.45905 0.97013 0.93176 0.91013 1.25971 0.95364 1.03140 0.95151 1.70119 1.50293 1.38890 0.98088 0.85417 0.78736 0.78932 0.77785 1.19351 1.21346 1.18610 1.73890 1.19300 1.03074 1.20861 1.74332 1.17607 1.03642 1.24676 1.22882 0.86697 0.88694 1.03369 1.61680 1.20856 0.95190 1.37703 1.23689 1.00082 0.97623 0.88494 1.22495 0.92716 0.92675 1.04990 1.21868 1.02554 0.88250 0.98341 0.83807 1.23061 0.71356 0.85302 0.85994 1.90739 1.45710 1.86881 1.20381 1.84474 1.80472 1.18141 1.48569 1.22846 0.91141 0.90558 1.02986 0.89354 0.87772 0.86579 0.89515 0.88346 0.98401 0.99984 0.92797 0.92974 0.86701 0.88634 0.85693 0.70802 0.90981 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.51 9.91 127.77 1.27 2.77 16 2 N -0.48 -15.68 3.21 -538.19 -1.73 -17.40 16 3 C 0.20 8.05 7.32 137.64 1.01 9.06 16 4 C -0.01 -0.60 5.53 29.85 0.16 -0.44 16 5 C 0.04 2.30 4.95 29.85 0.15 2.45 16 6 C -0.54 -29.21 9.11 25.60 0.23 -28.97 16 7 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 8 C 0.00 0.10 5.46 84.65 0.46 0.56 16 9 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 10 Si 0.97 42.77 29.54 68.60 2.03 44.79 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 14 N -0.33 -15.15 12.18 -49.54 -0.60 -15.75 16 15 N -0.36 -14.84 10.69 -58.00 -0.62 -15.46 16 16 C 0.34 11.53 7.04 260.11 1.83 13.36 16 17 N -0.43 -10.81 5.32 -693.49 -3.69 -14.50 16 18 C 0.03 0.47 6.03 86.65 0.52 1.00 16 19 C -0.09 -0.99 6.59 31.80 0.21 -0.78 16 20 C -0.09 -1.35 3.49 -10.66 -0.04 -1.38 16 21 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 22 C 0.50 8.01 7.50 71.24 0.53 8.54 16 23 O -0.55 -13.25 16.00 21.97 0.35 -12.90 16 24 O -0.50 -4.65 13.41 -51.38 -0.69 -5.34 16 25 C 0.05 1.24 6.08 86.45 0.53 1.77 16 26 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.10 2.13 7.25 -2.39 -0.02 2.11 16 28 H 0.12 1.89 7.93 -2.39 -0.02 1.87 16 29 H 0.09 3.55 8.14 -2.38 -0.02 3.53 16 30 H 0.10 3.39 7.27 -2.39 -0.02 3.38 16 31 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 33 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 34 H 0.05 1.08 7.99 -2.39 -0.02 1.06 16 35 H 0.11 1.57 7.24 -2.38 -0.02 1.55 16 36 H 0.10 0.92 7.86 -2.39 -0.02 0.90 16 37 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.43 0.66 9.10 -74.06 -0.67 -0.02 16 39 H 0.07 2.01 6.84 -2.39 -0.02 2.00 16 40 H 0.09 2.62 6.42 -2.39 -0.02 2.61 16 Total: -1.00 -80.24 336.78 2.60 -77.64 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 0.40 Total: 6.49 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 6.87 Total: 7.93 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -6.36 Total: -118.61 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.34 Total: -18.24 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -80.24 2.60 -77.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600912708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.830 kcal (2) G-P(sol) polarization free energy of solvation -80.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds