Wall clock time and date at job start Tue Mar 31 2020 06:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35512 * 117.00195 * 2 1 4 4 C 1.39643 * 120.49016 * 180.02562 * 3 2 1 5 5 C 1.39145 * 118.20062 * 180.02562 * 4 3 2 6 6 C 1.48447 * 120.51447 * 180.02562 * 5 4 3 7 7 O 1.21484 * 120.00020 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00183 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99938 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47706 * 34.99706 * 9 8 6 11 11 C 1.53002 * 109.46894 * 274.99511 * 9 8 6 12 12 C 1.53001 * 109.47035 * 154.99856 * 9 8 6 13 13 N 1.46496 * 109.47317 * 304.99600 * 12 9 8 14 14 C 1.46504 * 120.00162 * 270.00364 * 13 12 9 15 15 C 1.36935 * 120.00183 * 89.99698 * 13 12 9 16 16 H 1.08007 * 119.99793 * 337.59585 * 15 13 12 17 17 C 1.38808 * 120.00350 * 157.86721 * 15 13 12 18 18 N 1.31615 * 120.00463 * 155.47667 * 17 15 13 19 19 Si 1.86801 * 119.99838 * 335.47571 * 17 15 13 20 20 H 1.48499 * 109.47319 * 84.77709 * 19 17 15 21 21 H 1.48503 * 109.47464 * 204.77907 * 19 17 15 22 22 H 1.48508 * 109.47206 * 324.77898 * 19 17 15 23 23 N 1.33277 * 118.96845 * 0.26872 * 5 4 3 24 24 C 1.31530 * 120.88745 * 359.44596 * 23 5 4 25 25 N 1.31896 * 121.98158 * 0.57607 * 24 23 5 26 26 H 1.09001 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46998 * 300.00042 * 1 2 3 28 28 H 1.09011 * 109.47153 * 59.99517 * 1 2 3 29 29 H 1.08001 * 120.89558 * 359.97438 * 4 3 2 30 30 H 0.96998 * 119.99700 * 359.97438 * 8 6 5 31 31 H 1.08999 * 109.47417 * 300.00130 * 11 9 8 32 32 H 1.08996 * 109.47241 * 60.00211 * 11 9 8 33 33 H 1.09004 * 109.47248 * 180.02562 * 11 9 8 34 34 H 1.09002 * 109.46847 * 184.99402 * 12 9 8 35 35 H 1.09003 * 109.47375 * 64.99931 * 12 9 8 36 36 H 1.08997 * 109.46662 * 274.38554 * 14 13 12 37 37 H 1.08996 * 109.46650 * 34.38375 * 14 13 12 38 38 H 1.08997 * 109.46747 * 154.38207 * 14 13 12 39 39 H 0.96998 * 120.00424 * 179.97438 * 18 17 15 40 40 H 1.07997 * 119.00566 * 180.26351 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4381 1.2924 -0.0005 5 6 4.0198 2.5564 0.0000 6 6 5.4967 2.7065 -0.0011 7 8 6.2073 1.7212 -0.0020 8 7 6.0491 3.9357 -0.0010 9 6 7.5066 4.0838 -0.0027 10 1 7.9526 3.2833 -0.5931 11 6 8.0284 4.0095 1.4337 12 6 7.8812 5.4363 -0.6120 13 7 7.2805 5.5556 -1.9428 14 6 8.0172 5.0961 -3.1229 15 6 6.0304 6.0963 -2.0839 16 1 5.3468 6.1015 -1.2477 17 6 5.6397 6.6328 -3.3030 18 7 4.3621 6.7065 -3.6105 19 14 6.9273 7.2503 -4.5073 20 1 7.4269 6.1147 -5.3233 21 1 6.3217 8.2718 -5.3990 22 1 8.0570 7.8555 -3.7570 23 7 3.2304 3.6302 0.0065 24 6 1.9210 3.5058 0.0014 25 7 1.3314 2.3259 0.0010 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 4.0480 0.4011 -0.0005 30 1 5.4817 4.7224 -0.0006 31 1 7.5825 4.8100 2.0241 32 1 7.7616 3.0460 1.8678 33 1 9.1128 4.1201 1.4326 34 1 8.9656 5.5097 -0.6949 35 1 7.5106 6.2379 0.0270 36 1 8.6745 5.8918 -3.4733 37 1 8.6127 4.2215 -2.8615 38 1 7.3123 4.8332 -3.9116 39 1 4.0891 7.0817 -4.4623 40 1 1.3103 4.3965 0.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:51 Heat of formation + Delta-G solvation = 11.028804 kcal Electronic energy + Delta-G solvation = -24021.096865 eV Core-core repulsion = 20452.141417 eV Total energy + Delta-G solvation = -3568.955449 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.23349 -39.35989 -38.33602 -36.62141 -34.21827 -33.33394 -31.73789 -31.56343 -30.39885 -27.74773 -26.81086 -25.66085 -24.94125 -24.17707 -22.11654 -20.91022 -19.96624 -18.74108 -18.19429 -16.77494 -16.31458 -16.06934 -15.83071 -15.37622 -15.29603 -14.89155 -14.77071 -14.38205 -14.12428 -13.81385 -13.51122 -13.39228 -12.65686 -12.53937 -12.24303 -12.19906 -12.06315 -11.73671 -11.70862 -11.15945 -10.91932 -10.77059 -10.50005 -10.26544 -10.24667 -10.05346 -9.99007 -9.49228 -9.29052 -9.15039 -8.62688 -8.49958 -7.04571 -5.95704 -3.27765 0.64739 1.09786 2.69850 3.07674 3.35791 3.49317 3.51318 3.53261 4.00627 4.06393 4.19584 4.55453 4.83227 4.92679 5.06161 5.07555 5.11760 5.30042 5.35357 5.42192 5.47012 5.63653 5.71946 5.75475 5.98198 6.08424 6.14389 6.25485 6.27541 6.38138 6.48324 6.69101 6.73070 6.76096 6.97619 7.06326 7.86985 7.94795 8.14691 8.28782 8.59874 8.92387 9.72170 10.03904 11.19080 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.015902 B = 0.004936 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.415882 B = 5671.751548 C = 6851.069258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.301 6.301 3 C 0.357 3.643 4 C -0.191 4.191 5 C 0.168 3.832 6 C 0.569 3.431 7 O -0.545 6.545 8 N -0.666 5.666 9 C 0.116 3.884 10 H 0.080 0.920 11 C -0.159 4.159 12 C 0.141 3.859 13 N -0.609 5.609 14 C 0.104 3.896 15 C -0.263 4.263 16 H 0.090 0.910 17 C 0.027 3.973 18 N -0.899 5.899 19 Si 0.885 3.115 20 H -0.289 1.289 21 H -0.307 1.307 22 H -0.279 1.279 23 N -0.499 5.499 24 C 0.339 3.661 25 N -0.569 5.569 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.162 0.838 30 H 0.419 0.581 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.008 0.992 37 H 0.032 0.968 38 H 0.060 0.940 39 H 0.261 0.739 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.215 -8.778 9.573 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.205 6.205 3 C 0.169 3.831 4 C -0.215 4.215 5 C 0.023 3.977 6 C 0.352 3.648 7 O -0.423 6.423 8 N -0.316 5.316 9 C 0.008 3.992 10 H 0.099 0.901 11 C -0.218 4.218 12 C 0.013 3.987 13 N -0.332 5.332 14 C -0.041 4.041 15 C -0.391 4.391 16 H 0.107 0.893 17 C -0.172 4.172 18 N -0.541 5.541 19 Si 0.716 3.284 20 H -0.216 1.216 21 H -0.235 1.235 22 H -0.205 1.205 23 N -0.219 5.219 24 C 0.051 3.949 25 N -0.300 5.300 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.179 0.821 30 H 0.259 0.741 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.026 0.974 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.238 -8.884 9.440 13.361 hybrid contribution 0.453 0.145 -1.001 1.108 sum -2.786 -8.739 8.439 12.464 Atomic orbital electron populations 1.22959 0.76640 1.03252 1.02888 1.86237 1.23383 1.23892 1.87008 1.19991 0.89227 0.85119 0.88775 1.21853 0.92548 1.00584 1.06530 1.21556 0.95457 0.88430 0.92283 1.17639 0.85055 0.84427 0.77711 1.90734 1.61428 1.38418 1.51708 1.45859 1.08184 1.07916 1.69676 1.21895 0.79714 1.01744 0.95821 0.90144 1.22129 1.00935 1.01901 0.96870 1.21119 0.96617 0.93598 0.87358 1.44140 1.17698 1.70837 1.00523 1.21379 0.95863 0.95984 0.90883 1.18819 0.87648 1.33505 0.99114 0.89273 1.25119 0.95467 0.99379 0.97280 1.69897 1.14483 1.46810 1.22926 0.87066 0.82039 0.78326 0.81005 1.21595 1.23530 1.20523 1.68462 1.06446 1.32658 1.14325 1.24741 0.88213 0.93593 0.88342 1.68039 1.42040 0.99370 1.20514 0.88320 0.91968 0.91837 0.82066 0.74140 0.92526 0.92633 0.91832 0.92506 0.91907 0.97428 0.94960 0.92173 0.92928 0.77706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.41 101.05 1.05 1.40 16 2 O -0.30 -3.88 10.49 -18.23 -0.19 -4.07 16 3 C 0.36 5.28 7.54 -16.68 -0.13 5.16 16 4 C -0.19 -3.03 9.68 -38.72 -0.37 -3.41 16 5 C 0.17 2.97 6.79 -82.70 -0.56 2.41 16 6 C 0.57 10.83 7.79 -12.05 -0.09 10.74 16 7 O -0.54 -11.15 16.08 5.38 0.09 -11.06 16 8 N -0.67 -12.32 4.48 -54.56 -0.24 -12.57 16 9 C 0.12 1.96 2.88 -67.93 -0.20 1.76 16 10 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 11 C -0.16 -2.18 9.48 37.16 0.35 -1.82 16 12 C 0.14 2.52 5.34 -4.04 -0.02 2.50 16 13 N -0.61 -13.75 2.63 -181.12 -0.48 -14.22 16 14 C 0.10 2.27 8.33 59.85 0.50 2.77 16 15 C -0.26 -6.85 9.23 -15.06 -0.14 -6.99 16 16 H 0.09 2.40 6.40 -52.48 -0.34 2.07 16 17 C 0.03 0.75 5.15 -17.43 -0.09 0.66 16 18 N -0.90 -26.60 13.97 55.49 0.78 -25.82 16 19 Si 0.88 22.22 24.05 -169.99 -4.09 18.14 16 20 H -0.29 -7.07 6.34 56.52 0.36 -6.71 16 21 H -0.31 -7.90 7.11 56.52 0.40 -7.50 16 22 H -0.28 -6.96 6.93 56.52 0.39 -6.56 16 23 N -0.50 -8.66 9.70 -11.20 -0.11 -8.77 16 24 C 0.34 5.04 12.27 -92.29 -1.13 3.91 16 25 N -0.57 -8.27 9.36 -14.64 -0.14 -8.41 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 28 H 0.06 0.59 8.12 -51.92 -0.42 0.17 16 29 H 0.16 2.41 7.73 -52.49 -0.41 2.00 16 30 H 0.42 8.15 5.88 -40.82 -0.24 7.91 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 35 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 36 H 0.01 0.17 5.84 -51.93 -0.30 -0.13 16 37 H 0.03 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.06 1.44 5.69 -51.93 -0.30 1.14 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.21 2.39 8.06 -52.49 -0.42 1.96 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -31.89 334.54 -5.55 -37.45 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.38 Total: 5.22 kcal Atomic # 6 Polarization: 19.91 SS G_CDS: -0.83 Total: 19.08 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -0.19 Total: -69.79 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.10 Total: -15.13 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.09 Total: 18.14 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.89 -5.55 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.475 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds