Wall clock time and date at job start Tue Mar 31 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35509 * 117.00058 * 2 1 4 4 C 1.39644 * 120.49216 * 179.97438 * 3 2 1 5 5 C 1.39146 * 118.20638 * 180.02562 * 4 3 2 6 6 C 1.48447 * 120.51755 * 180.02562 * 5 4 3 7 7 O 1.21474 * 119.99969 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99942 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99873 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.46876 * 325.00508 * 9 8 6 11 11 C 1.53004 * 109.47031 * 85.00106 * 9 8 6 12 12 C 1.53001 * 109.47047 * 204.99805 * 9 8 6 13 13 N 1.46504 * 109.46805 * 55.00516 * 12 9 8 14 14 C 1.46503 * 119.99545 * 269.99823 * 13 12 9 15 15 C 1.36936 * 120.00317 * 89.99690 * 13 12 9 16 16 H 1.07996 * 119.99539 * 20.38356 * 15 13 12 17 17 C 1.38813 * 119.99757 * 200.38052 * 15 13 12 18 18 N 1.31608 * 120.00166 * 15.00798 * 17 15 13 19 19 Si 1.86804 * 119.99486 * 195.00358 * 17 15 13 20 20 H 1.48501 * 109.46761 * 85.00626 * 19 17 15 21 21 H 1.48497 * 109.46866 * 205.00298 * 19 17 15 22 22 H 1.48494 * 109.47183 * 325.00460 * 19 17 15 23 23 N 1.33278 * 118.96384 * 0.28671 * 5 4 3 24 24 C 1.31530 * 120.88741 * 359.43429 * 23 5 4 25 25 N 1.31892 * 121.98792 * 0.57581 * 24 23 5 26 26 H 1.08995 * 109.47468 * 59.98980 * 1 2 3 27 27 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46602 * 299.99151 * 1 2 3 29 29 H 1.08003 * 120.89464 * 0.02562 * 4 3 2 30 30 H 0.96996 * 119.99861 * 0.02562 * 8 6 5 31 31 H 1.09001 * 109.47048 * 179.97438 * 11 9 8 32 32 H 1.09002 * 109.47097 * 300.00384 * 11 9 8 33 33 H 1.09001 * 109.47056 * 59.99914 * 11 9 8 34 34 H 1.09000 * 109.47263 * 175.00034 * 12 9 8 35 35 H 1.08999 * 109.47300 * 295.00358 * 12 9 8 36 36 H 1.08997 * 109.47448 * 95.12747 * 14 13 12 37 37 H 1.09002 * 109.46943 * 215.12920 * 14 13 12 38 38 H 1.09001 * 109.47360 * 335.12563 * 14 13 12 39 39 H 0.97007 * 119.99990 * 180.02562 * 18 17 15 40 40 H 1.08002 * 119.00754 * 180.27135 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4381 1.2924 0.0005 5 6 4.0198 2.5564 0.0011 6 6 5.4967 2.7065 0.0011 7 8 6.2073 1.7213 0.0002 8 7 6.0491 3.9359 0.0021 9 6 7.5066 4.0840 0.0016 10 1 7.9534 3.2825 0.5899 11 6 8.0260 4.0120 -1.4358 12 6 7.8821 5.4356 0.6124 13 7 7.2836 5.5526 1.9445 14 6 5.9464 6.1309 2.0984 15 6 7.9740 5.1214 3.0456 16 1 9.0470 5.0071 2.9996 17 6 7.2948 4.8312 4.2209 18 7 5.9873 4.6815 4.2056 19 14 8.2367 4.6531 5.8243 20 1 8.4316 5.9925 6.4352 21 1 7.4675 3.7908 6.7570 22 1 9.5595 4.0345 5.5552 23 7 3.2304 3.6303 0.0069 24 6 1.9210 3.5058 0.0009 25 7 1.3314 2.3260 0.0003 26 1 -0.3634 0.5140 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 4.0480 0.4011 0.0005 30 1 5.4817 4.7225 0.0032 31 1 9.1104 4.1227 -1.4363 32 1 7.7584 3.0492 -1.8711 33 1 7.5791 4.8134 -2.0242 34 1 8.9666 5.5089 0.6937 35 1 7.5105 6.2381 -0.0247 36 1 5.2055 5.3318 2.1230 37 1 5.9005 6.6976 3.0283 38 1 5.7382 6.7936 1.2584 39 1 5.5127 4.4791 5.0270 40 1 1.3103 4.3965 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:53 Heat of formation + Delta-G solvation = 5.944019 kcal Electronic energy + Delta-G solvation = -24042.714914 eV Core-core repulsion = 20473.538973 eV Total energy + Delta-G solvation = -3569.175942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.29852 -39.31846 -38.36475 -36.38035 -34.07427 -33.38958 -31.80389 -31.19716 -30.13739 -27.79745 -26.14225 -25.62897 -24.92018 -24.25218 -21.96840 -20.81499 -19.99150 -18.69719 -18.22562 -16.78467 -16.36796 -16.13010 -15.69433 -15.41391 -14.99525 -14.88618 -14.70190 -14.33084 -13.97102 -13.61592 -13.49907 -13.15583 -12.85233 -12.26415 -12.13888 -11.99561 -11.78656 -11.43776 -11.08543 -10.87590 -10.83369 -10.76784 -10.53117 -10.32797 -10.19770 -10.04246 -9.90471 -9.81103 -9.34649 -9.21468 -8.60097 -8.38700 -6.75853 -5.70011 -3.13519 0.59948 1.01093 2.65483 3.08766 3.41136 3.47222 3.48354 3.50410 3.94275 3.99990 4.12306 4.53233 4.79720 5.00764 5.02753 5.07007 5.26317 5.35043 5.40440 5.49335 5.56532 5.68678 5.84625 5.98865 6.07317 6.11711 6.24357 6.47154 6.52968 6.66531 6.70196 6.85706 6.95922 7.11131 7.37813 7.74003 7.84014 7.87503 8.10454 8.39969 8.64417 9.25063 9.88605 10.35604 11.34867 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.004711 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.063664 B = 5942.688612 C = 6802.517561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.300 6.300 3 C 0.360 3.640 4 C -0.188 4.188 5 C 0.173 3.827 6 C 0.571 3.429 7 O -0.535 6.535 8 N -0.669 5.669 9 C 0.113 3.887 10 H 0.088 0.912 11 C -0.159 4.159 12 C 0.143 3.857 13 N -0.598 5.598 14 C 0.161 3.839 15 C -0.257 4.257 16 H 0.070 0.930 17 C 0.004 3.996 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.293 1.293 22 H -0.280 1.280 23 N -0.510 5.510 24 C 0.334 3.666 25 N -0.570 5.570 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.163 0.837 30 H 0.408 0.592 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.035 0.965 37 H 0.042 0.958 38 H -0.004 1.004 39 H 0.250 0.750 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.345 -3.118 -11.727 15.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.203 6.203 3 C 0.172 3.828 4 C -0.212 4.212 5 C 0.028 3.972 6 C 0.353 3.647 7 O -0.412 6.412 8 N -0.317 5.317 9 C 0.005 3.995 10 H 0.106 0.894 11 C -0.218 4.218 12 C 0.014 3.986 13 N -0.320 5.320 14 C 0.017 3.983 15 C -0.386 4.386 16 H 0.087 0.913 17 C -0.194 4.194 18 N -0.548 5.548 19 Si 0.733 3.267 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.206 1.206 23 N -0.231 5.231 24 C 0.045 3.955 25 N -0.301 5.301 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.181 0.819 30 H 0.244 0.756 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.061 0.939 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.342 -3.336 -11.549 15.224 hybrid contribution 0.153 -0.518 1.126 1.249 sum -9.189 -3.854 -10.424 14.420 Atomic orbital electron populations 1.22963 0.76597 1.03349 1.02823 1.86253 1.23412 1.23819 1.86863 1.19995 0.89224 0.85089 0.88522 1.21895 0.92555 1.00750 1.05960 1.21613 0.95529 0.88378 0.91683 1.17555 0.84842 0.84525 0.77761 1.90750 1.61284 1.38286 1.50875 1.45659 1.08410 1.07295 1.70377 1.22043 0.78953 1.03206 0.95268 0.89351 1.22156 1.01038 1.01434 0.97207 1.21199 0.97951 0.92262 0.87144 1.43950 1.17046 1.70298 1.00707 1.20859 0.86104 0.95101 0.96278 1.19191 0.90612 1.39518 0.89297 0.91269 1.24935 0.95675 1.00011 0.98792 1.70081 1.06399 1.52075 1.26220 0.86304 0.79097 0.77433 0.83885 1.21538 1.21907 1.20572 1.68392 1.06431 1.33028 1.15207 1.24670 0.88191 0.93681 0.88913 1.68015 1.42017 0.99347 1.20699 0.91970 0.88251 0.91850 0.81905 0.75563 0.91820 0.92913 0.93009 0.92054 0.93805 0.94714 0.93965 0.98521 0.93940 0.77871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.41 101.05 1.05 1.38 16 2 O -0.30 -3.82 10.49 -18.22 -0.19 -4.01 16 3 C 0.36 5.21 7.54 -16.68 -0.13 5.08 16 4 C -0.19 -3.00 9.68 -38.72 -0.37 -3.38 16 5 C 0.17 3.03 6.79 -82.70 -0.56 2.47 16 6 C 0.57 11.35 7.79 -12.05 -0.09 11.25 16 7 O -0.54 -11.84 16.08 5.39 0.09 -11.76 16 8 N -0.67 -12.68 4.41 -54.56 -0.24 -12.92 16 9 C 0.11 2.11 2.88 -67.93 -0.20 1.91 16 10 H 0.09 1.97 7.58 -51.93 -0.39 1.57 16 11 C -0.16 -2.37 9.48 37.16 0.35 -2.01 16 12 C 0.14 2.76 5.33 -4.04 -0.02 2.73 16 13 N -0.60 -14.44 2.78 -181.11 -0.50 -14.94 16 14 C 0.16 3.81 7.60 59.85 0.45 4.27 16 15 C -0.26 -6.97 9.68 -15.06 -0.15 -7.12 16 16 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 17 C 0.00 0.12 5.06 -17.43 -0.09 0.03 16 18 N -0.90 -26.32 10.67 55.49 0.59 -25.73 16 19 Si 0.90 22.19 29.58 -169.99 -5.03 17.16 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 N -0.51 -8.12 9.70 -11.20 -0.11 -8.23 16 24 C 0.33 4.40 12.27 -92.30 -1.13 3.27 16 25 N -0.57 -7.74 9.36 -14.64 -0.14 -7.88 16 26 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 29 H 0.16 2.53 7.73 -52.48 -0.41 2.12 16 30 H 0.41 7.47 6.57 -40.82 -0.27 7.20 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 35 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 36 H 0.03 0.89 6.97 -51.93 -0.36 0.53 16 37 H 0.04 1.10 7.22 -51.93 -0.37 0.72 16 38 H 0.00 -0.08 7.83 -51.93 -0.41 -0.48 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.20 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -32.46 341.72 -6.80 -39.27 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.54 Total: 4.01 kcal Atomic # 6 Polarization: 20.76 SS G_CDS: -0.88 Total: 19.88 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -0.40 Total: -69.70 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.10 Total: -15.76 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.46 -6.80 -39.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.211 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds