Wall clock time and date at job start Tue Mar 31 2020 06:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35302 * 117.00143 * 2 1 4 4 N 1.32462 * 119.02176 * 179.97438 * 3 2 1 5 5 C 1.32023 * 120.91526 * 180.02562 * 4 3 2 6 6 C 1.40058 * 118.98540 * 0.02562 * 5 4 3 7 7 C 1.47626 * 120.88259 * 180.02562 * 6 5 4 8 8 O 1.21583 * 119.99961 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00101 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00229 * 180.02562 * 9 7 6 11 11 H 1.09006 * 109.47213 * 34.99308 * 10 9 7 12 12 C 1.53005 * 109.46918 * 275.00028 * 10 9 7 13 13 C 1.52994 * 109.47462 * 154.99638 * 10 9 7 14 14 N 1.46497 * 109.47351 * 304.99816 * 13 10 9 15 15 C 1.46497 * 120.00128 * 270.00097 * 14 13 10 16 16 C 1.36945 * 119.99809 * 89.99811 * 14 13 10 17 17 H 1.07998 * 119.99779 * 22.34440 * 16 14 13 18 18 C 1.38811 * 119.99881 * 202.34924 * 16 14 13 19 19 N 1.31621 * 120.00036 * 11.25685 * 18 16 14 20 20 Si 1.86800 * 119.99890 * 191.26064 * 18 16 14 21 21 H 1.48496 * 109.47157 * 59.99502 * 20 18 16 22 22 H 1.48501 * 109.47144 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46913 * 299.99669 * 20 18 16 24 24 C 1.40059 * 118.23376 * 0.27523 * 6 5 4 25 25 N 1.32012 * 118.98948 * 359.42144 * 24 6 5 26 26 H 1.08999 * 109.46956 * 60.00002 * 1 2 3 27 27 H 1.09003 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47472 * 300.00265 * 1 2 3 29 29 H 1.07996 * 120.50584 * 179.97438 * 5 4 3 30 30 H 0.96998 * 120.00315 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.46756 * 299.99979 * 12 10 9 32 32 H 1.09003 * 109.47297 * 59.99552 * 12 10 9 33 33 H 1.08999 * 109.47199 * 179.97438 * 12 10 9 34 34 H 1.08997 * 109.47236 * 65.00155 * 13 10 9 35 35 H 1.09002 * 109.47008 * 184.99729 * 13 10 9 36 36 H 1.09000 * 109.47013 * 94.24154 * 15 14 13 37 37 H 1.09002 * 109.46958 * 214.24338 * 15 14 13 38 38 H 1.08999 * 109.47179 * 334.24458 * 15 14 13 39 39 H 0.97003 * 119.99998 * 180.02562 * 19 18 16 40 40 H 1.08004 * 120.50633 * 179.72262 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 3.3670 1.2522 0.0005 5 6 4.0049 2.4081 0.0010 6 6 3.2603 3.5943 0.0016 7 6 3.9304 4.9097 0.0016 8 8 5.1446 4.9734 0.0007 9 7 3.1964 6.0400 0.0027 10 6 3.8614 7.3453 0.0022 11 1 4.7758 7.2870 -0.5883 12 6 4.2066 7.7424 1.4389 13 6 2.9274 8.3933 -0.6062 14 7 2.5018 7.9542 -1.9375 15 6 3.2870 8.3256 -3.1172 16 6 1.3699 7.1964 -2.0791 17 1 0.6074 7.2168 -1.3146 18 6 1.2029 6.4021 -3.2051 19 7 2.2130 6.2015 -4.0247 20 14 -0.4557 5.6182 -3.5574 21 1 -1.4823 6.6799 -3.7116 22 1 -0.3723 4.8251 -4.8101 23 1 -0.8310 4.7266 -2.4306 24 6 1.8629 3.4994 0.0075 25 7 1.3028 2.3040 0.0006 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 5.0845 2.4385 0.0019 30 1 2.2277 5.9892 0.0031 31 1 3.2922 7.8006 2.0293 32 1 4.8720 6.9957 1.8723 33 1 4.7018 8.7134 1.4385 34 1 2.0530 8.5155 0.0329 35 1 3.4532 9.3446 -0.6883 36 1 3.9910 7.5270 -3.3511 37 1 2.6188 8.4807 -3.9642 38 1 3.8355 9.2453 -2.9138 39 1 2.0962 5.6467 -4.8118 40 1 1.2529 4.3906 0.0126 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754329801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:59 Heat of formation + Delta-G solvation = 9.394140 kcal Electronic energy + Delta-G solvation = -24412.420227 eV Core-core repulsion = 20843.393894 eV Total energy + Delta-G solvation = -3569.026333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25062 -39.26427 -38.09946 -36.34552 -34.20342 -33.77019 -32.06305 -31.05306 -29.82709 -27.66627 -26.22875 -25.67451 -24.64344 -24.23350 -21.98015 -20.75524 -19.90544 -18.82365 -17.96110 -17.42001 -16.66442 -16.45489 -15.50624 -15.06978 -14.87337 -14.63923 -14.47155 -14.05373 -13.85387 -13.62370 -13.34796 -13.09234 -12.88048 -12.30112 -12.11267 -11.98578 -11.69475 -11.46668 -11.37579 -11.29865 -10.92915 -10.88602 -10.77690 -10.46556 -10.30699 -10.14482 -9.90782 -9.44737 -9.22141 -9.00795 -8.64857 -8.37375 -6.85763 -5.82090 -3.28944 0.69382 1.08963 2.50412 3.22671 3.27410 3.34794 3.37114 3.67360 3.97511 4.05368 4.38135 4.58023 4.68367 4.97581 5.13043 5.17157 5.21601 5.27370 5.44555 5.45463 5.60903 5.76181 5.83919 5.93253 6.06795 6.11545 6.19416 6.39483 6.46606 6.65936 6.70616 6.82980 7.06666 7.14488 7.33506 7.62048 7.74494 8.00027 8.13316 8.28474 8.75227 9.12228 9.76582 10.26801 11.21404 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.006600 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.622328 B = 4241.395611 C = 5766.284966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.289 6.289 3 C 0.506 3.494 4 N -0.529 5.529 5 C 0.242 3.758 6 C -0.265 4.265 7 C 0.575 3.425 8 O -0.554 6.554 9 N -0.679 5.679 10 C 0.119 3.881 11 H 0.080 0.920 12 C -0.160 4.160 13 C 0.141 3.859 14 N -0.598 5.598 15 C 0.164 3.836 16 C -0.262 4.262 17 H 0.066 0.934 18 C 0.010 3.990 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.231 3.769 25 N -0.569 5.569 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.189 0.811 30 H 0.402 0.598 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.028 0.972 37 H 0.044 0.956 38 H -0.004 1.004 39 H 0.253 0.747 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.708 -4.081 9.840 10.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.190 6.190 3 C 0.205 3.795 4 N -0.254 5.254 5 C 0.075 3.925 6 C -0.274 4.274 7 C 0.360 3.640 8 O -0.434 6.434 9 N -0.328 5.328 10 C 0.011 3.989 11 H 0.098 0.902 12 C -0.219 4.219 13 C 0.013 3.987 14 N -0.321 5.321 15 C 0.019 3.981 16 C -0.391 4.391 17 H 0.084 0.916 18 C -0.190 4.190 19 N -0.539 5.539 20 Si 0.721 3.279 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.064 3.936 25 N -0.298 5.298 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.205 0.795 30 H 0.238 0.762 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.015 0.985 39 H 0.064 0.936 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.308 -5.335 9.625 11.082 hybrid contribution -1.256 0.312 -0.537 1.401 sum -2.564 -5.022 9.088 10.695 Atomic orbital electron populations 1.23030 0.75569 1.03465 1.03239 1.86034 1.23512 1.22834 1.86589 1.20932 0.86396 0.84861 0.87313 1.67685 1.07238 1.30036 1.20480 1.23312 1.01069 0.84336 0.83799 1.21708 0.96054 0.97266 1.12339 1.17456 0.86681 0.83212 0.76626 1.90722 1.13320 1.87355 1.51979 1.45615 1.10317 1.04977 1.71920 1.21898 0.98199 0.83691 0.95135 0.90221 1.22161 1.01117 1.01200 0.97418 1.21199 0.95568 0.94097 0.87831 1.43877 1.27878 1.60467 0.99843 1.20800 0.94482 0.93852 0.88952 1.19012 0.94628 1.19413 1.06089 0.91641 1.24995 0.96844 0.98108 0.99065 1.70052 1.28684 1.40256 1.14944 0.86552 0.84266 0.79217 0.77887 1.20961 1.21717 1.20531 1.23278 0.91731 0.94503 0.84087 1.68064 1.41036 0.99063 1.21633 0.91601 0.87887 0.91717 0.79462 0.76196 0.92967 0.92839 0.92102 0.93278 0.92786 0.95362 0.93718 0.98519 0.93636 0.80510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.35 101.05 1.05 1.50 16 2 O -0.29 -4.29 10.55 -17.60 -0.19 -4.48 16 3 C 0.51 8.47 8.48 -91.00 -0.77 7.70 16 4 N -0.53 -9.00 10.45 -14.39 -0.15 -9.16 16 5 C 0.24 3.94 10.87 -16.79 -0.18 3.76 16 6 C -0.27 -4.55 5.90 -104.70 -0.62 -5.16 16 7 C 0.58 10.86 7.74 -12.43 -0.10 10.76 16 8 O -0.55 -11.71 16.10 5.29 0.09 -11.63 16 9 N -0.68 -12.19 4.45 -54.82 -0.24 -12.43 16 10 C 0.12 2.06 2.88 -67.93 -0.20 1.87 16 11 H 0.08 1.62 7.58 -51.93 -0.39 1.22 16 12 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 13 C 0.14 2.54 5.36 -4.05 -0.02 2.52 16 14 N -0.60 -13.53 2.82 -181.13 -0.51 -14.04 16 15 C 0.16 3.85 9.01 59.85 0.54 4.39 16 16 C -0.26 -6.30 8.02 -15.06 -0.12 -6.42 16 17 H 0.07 1.50 7.84 -52.49 -0.41 1.08 16 18 C 0.01 0.25 5.13 -17.43 -0.09 0.16 16 19 N -0.90 -24.73 10.58 55.49 0.59 -24.14 16 20 Si 0.89 20.42 29.57 -169.99 -5.03 15.39 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 C 0.23 3.77 10.81 -16.79 -0.18 3.59 16 25 N -0.57 -9.42 9.19 -14.39 -0.13 -9.55 16 26 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.19 2.70 7.74 -52.49 -0.41 2.30 16 30 H 0.40 6.94 5.52 -40.82 -0.23 6.71 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.82 8.03 -51.93 -0.42 0.41 16 35 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 36 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 37 H 0.04 1.14 7.19 -51.93 -0.37 0.76 16 38 H 0.00 -0.08 7.84 -51.93 -0.41 -0.48 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.18 2.64 6.53 -52.48 -0.34 2.30 16 LS Contribution 339.66 15.07 5.12 5.12 Total: -1.00 -30.72 339.66 -6.23 -36.95 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.44 Total: 5.18 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: -0.34 Total: 22.78 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -0.45 Total: -69.32 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.10 Total: -16.10 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.72 -6.23 -36.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.344 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds