Wall clock time and date at job start Tue Mar 31 2020 07:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35288 * 116.99955 * 2 1 4 4 N 1.32474 * 119.01939 * 179.97438 * 3 2 1 5 5 C 1.32015 * 120.91227 * 179.97438 * 4 3 2 6 6 C 1.40056 * 118.99145 * 359.97438 * 5 4 3 7 7 C 1.47628 * 120.88538 * 179.97438 * 6 5 4 8 8 O 1.21584 * 119.99774 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99973 * 180.02562 * 7 6 5 10 10 C 1.46508 * 120.00081 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47035 * 325.00516 * 10 9 7 12 12 C 1.53001 * 109.46854 * 85.00053 * 10 9 7 13 13 C 1.52994 * 109.47336 * 205.00149 * 10 9 7 14 14 N 1.46501 * 109.46970 * 55.00221 * 13 10 9 15 15 C 1.46507 * 119.99795 * 269.71965 * 14 13 10 16 16 C 1.36932 * 120.00136 * 89.99851 * 14 13 10 17 17 H 1.07995 * 120.00446 * 339.76285 * 16 14 13 18 18 C 1.38815 * 120.00185 * 159.75971 * 16 14 13 19 19 N 1.31624 * 120.00087 * 344.39492 * 18 16 14 20 20 Si 1.86801 * 120.00263 * 164.38986 * 18 16 14 21 21 H 1.48502 * 109.46898 * 60.00058 * 20 18 16 22 22 H 1.48502 * 109.47224 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46886 * 300.00531 * 20 18 16 24 24 C 1.40060 * 118.23258 * 0.25381 * 6 5 4 25 25 N 1.32012 * 118.98741 * 359.49083 * 24 6 5 26 26 H 1.08992 * 109.46991 * 60.00309 * 1 2 3 27 27 H 1.09007 * 109.46791 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46898 * 299.99690 * 1 2 3 29 29 H 1.08001 * 120.50226 * 179.97438 * 5 4 3 30 30 H 0.97003 * 120.00265 * 0.02562 * 9 7 6 31 31 H 1.09004 * 109.46921 * 60.00393 * 12 10 9 32 32 H 1.09001 * 109.47095 * 180.02562 * 12 10 9 33 33 H 1.08999 * 109.47484 * 300.00430 * 12 10 9 34 34 H 1.09003 * 109.47490 * 295.00036 * 13 10 9 35 35 H 1.09001 * 109.47128 * 174.99680 * 13 10 9 36 36 H 1.08990 * 109.47122 * 265.06576 * 15 14 13 37 37 H 1.09000 * 109.46562 * 25.07164 * 15 14 13 38 38 H 1.09000 * 109.46764 * 145.06296 * 15 14 13 39 39 H 0.96992 * 120.00359 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.50723 * 179.72223 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 7 3.3671 1.2521 0.0005 5 6 4.0050 2.4080 0.0000 6 6 3.2604 3.5942 -0.0016 7 6 3.9306 4.9096 -0.0016 8 8 5.1448 4.9732 -0.0007 9 7 3.1966 6.0398 -0.0027 10 6 3.8616 7.3453 -0.0033 11 1 4.7765 7.2872 0.5865 12 6 4.2057 7.7416 -1.4405 13 6 2.9281 8.3935 0.6053 14 7 2.5035 7.9550 1.9370 15 6 1.2893 7.1495 2.0904 16 6 3.2382 8.3026 3.0390 17 1 4.2698 8.6023 2.9277 18 6 2.6572 8.2698 4.2993 19 7 1.3478 8.2093 4.4189 20 14 3.7335 8.3116 5.8254 21 1 4.5346 9.5620 5.8321 22 1 2.8763 8.2658 7.0372 23 1 4.6455 7.1396 5.8201 24 6 1.8630 3.4993 0.0028 25 7 1.3029 2.3039 -0.0019 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 5.0846 2.4383 0.0009 30 1 2.2278 5.9891 -0.0031 31 1 3.2909 7.7996 -2.0303 32 1 4.7009 8.7126 -1.4409 33 1 4.8708 6.9948 -1.8741 34 1 2.0531 8.5154 -0.0333 35 1 3.4539 9.3449 0.6866 36 1 0.4472 7.8020 2.3208 37 1 1.0900 6.6126 1.1630 38 1 1.4277 6.4346 2.9015 39 1 0.9418 8.1860 5.2995 40 1 1.2530 4.3906 0.0063 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754329802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:01 Heat of formation + Delta-G solvation = -11.630197 kcal Electronic energy + Delta-G solvation = -23884.550181 eV Core-core repulsion = 20314.612164 eV Total energy + Delta-G solvation = -3569.938017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.54710 -40.76135 -39.32890 -38.05299 -35.88361 -35.14877 -33.53975 -32.73717 -31.37900 -28.63661 -28.00034 -27.39621 -25.96156 -25.50689 -23.62653 -22.26195 -21.59747 -20.00391 -19.29342 -18.93051 -18.52962 -17.60535 -16.96815 -16.90017 -16.20887 -16.08980 -15.62533 -15.53872 -15.45776 -15.11896 -14.85330 -14.65093 -14.42112 -13.68776 -13.47533 -13.19977 -13.11558 -12.93381 -12.78719 -12.70975 -12.50823 -12.41586 -12.28812 -12.17116 -11.99961 -11.85064 -11.74227 -11.02027 -10.62848 -10.50335 -10.34070 -9.94861 -8.75262 -7.82256 -5.25842 -0.64819 -0.19110 1.39279 1.44095 1.47234 1.52351 1.76513 2.15666 2.50967 2.62841 2.75360 3.26880 3.30647 3.48354 3.63473 3.71097 3.82124 4.18801 4.34351 4.37832 4.41433 4.49844 4.54145 4.68566 4.78232 4.81430 4.87383 4.94479 5.04938 5.20705 5.32932 5.42556 5.46798 5.60987 5.66941 5.77665 5.86005 6.33278 6.53323 6.75572 7.17842 7.20110 7.90904 8.29521 9.19577 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.004529 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.680615 B = 6180.967001 C = 7032.873573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.298 6.298 3 C 0.504 3.496 4 N -0.546 5.546 5 C 0.247 3.753 6 C -0.283 4.283 7 C 0.573 3.427 8 O -0.575 6.575 9 N -0.691 5.691 10 C 0.126 3.874 11 H 0.052 0.948 12 C -0.148 4.148 13 C 0.141 3.859 14 N -0.613 5.613 15 C 0.180 3.820 16 C -0.256 4.256 17 H 0.065 0.935 18 C -0.047 4.047 19 N -0.933 5.933 20 Si 0.953 3.047 21 H -0.275 1.275 22 H -0.294 1.294 23 H -0.289 1.289 24 C 0.234 3.766 25 N -0.567 5.567 26 H 0.071 0.929 27 H 0.136 0.864 28 H 0.064 0.936 29 H 0.199 0.801 30 H 0.403 0.597 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.005 0.995 37 H 0.039 0.961 38 H 0.010 0.990 39 H 0.247 0.753 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 -10.340 -13.520 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.198 6.198 3 C 0.203 3.797 4 N -0.271 5.271 5 C 0.081 3.919 6 C -0.291 4.291 7 C 0.360 3.640 8 O -0.457 6.457 9 N -0.342 5.342 10 C 0.019 3.981 11 H 0.070 0.930 12 C -0.206 4.206 13 C 0.015 3.985 14 N -0.336 5.336 15 C 0.035 3.965 16 C -0.387 4.387 17 H 0.083 0.917 18 C -0.242 4.242 19 N -0.580 5.580 20 Si 0.782 3.218 21 H -0.201 1.201 22 H -0.220 1.220 23 H -0.216 1.216 24 C 0.067 3.933 25 N -0.296 5.296 26 H 0.090 0.910 27 H 0.153 0.847 28 H 0.083 0.917 29 H 0.216 0.784 30 H 0.242 0.758 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.023 0.977 37 H 0.057 0.943 38 H 0.029 0.971 39 H 0.056 0.944 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.755 -11.521 -13.373 17.865 hybrid contribution 0.295 0.915 1.392 1.692 sum -2.460 -10.607 -11.981 16.189 Atomic orbital electron populations 1.23388 0.73179 1.05883 1.03418 1.86072 1.25818 1.22105 1.85829 1.21235 0.86490 0.85619 0.86337 1.67758 1.07870 1.30281 1.21196 1.23536 1.01751 0.84092 0.82565 1.21545 0.96733 0.96126 1.14746 1.17759 0.86480 0.83833 0.75973 1.90745 1.14683 1.87722 1.52514 1.45862 1.10328 1.05326 1.72731 1.21732 0.96717 0.82642 0.97034 0.92982 1.22022 1.02241 1.01811 0.94555 1.21252 0.96928 0.94896 0.85461 1.44055 1.27880 1.59610 1.02035 1.20590 0.87718 0.92641 0.95516 1.19397 0.93352 1.39558 0.86371 0.91721 1.25497 0.96329 1.02204 1.00172 1.70191 1.09057 1.56569 1.22233 0.85556 0.78196 0.78015 0.80003 1.20078 1.22043 1.21630 1.23586 0.91191 0.95262 0.83284 1.68163 1.40618 0.98927 1.21935 0.91024 0.84656 0.91678 0.78439 0.75843 0.90637 0.90492 0.93487 0.91083 0.91869 0.97682 0.94272 0.97117 0.94413 0.78329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.35 113.37 1.17 1.69 16 2 O -0.30 -7.03 10.55 -85.74 -0.90 -7.93 16 3 C 0.50 13.52 8.48 180.48 1.53 15.05 16 4 N -0.55 -15.48 10.45 -312.41 -3.26 -18.74 16 5 C 0.25 6.62 10.87 85.11 0.93 7.54 16 6 C -0.28 -7.60 5.90 -19.92 -0.12 -7.71 16 7 C 0.57 18.03 7.74 86.72 0.67 18.71 16 8 O -0.58 -21.87 16.10 -3.98 -0.06 -21.94 16 9 N -0.69 -20.03 4.48 -445.60 -2.00 -22.03 16 10 C 0.13 3.92 2.88 44.99 0.13 4.05 16 11 H 0.05 2.02 7.58 -2.38 -0.02 2.01 16 12 C -0.15 -3.52 9.48 71.98 0.68 -2.83 16 13 C 0.14 4.83 5.29 86.38 0.46 5.29 16 14 N -0.61 -27.67 2.78 -726.94 -2.02 -29.69 16 15 C 0.18 7.79 8.52 127.77 1.09 8.88 16 16 C -0.26 -13.54 9.67 84.04 0.81 -12.73 16 17 H 0.06 3.40 7.88 -2.91 -0.02 3.38 16 18 C -0.05 -2.56 5.05 84.86 0.43 -2.13 16 19 N -0.93 -53.38 10.68 21.65 0.23 -53.15 16 20 Si 0.95 45.21 29.58 68.60 2.03 47.24 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 C 0.23 5.43 10.81 85.11 0.92 6.35 16 25 N -0.57 -13.94 9.19 -312.41 -2.87 -16.81 16 26 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 27 H 0.14 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.06 0.99 8.09 -2.38 -0.02 0.97 16 29 H 0.20 4.76 7.74 -2.91 -0.02 4.73 16 30 H 0.40 9.92 4.34 -92.71 -0.40 9.52 16 31 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 35 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 36 H 0.00 0.24 7.40 -2.39 -0.02 0.22 16 37 H 0.04 1.26 5.78 -2.39 -0.01 1.24 16 38 H 0.01 0.50 7.21 -2.39 -0.02 0.48 16 39 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 40 H 0.20 3.48 6.53 -2.91 -0.02 3.46 16 Total: -1.00 -70.04 337.80 0.50 -69.54 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.66 Total: 11.35 kcal Atomic # 6 Polarization: 33.46 SS G_CDS: 8.70 Total: 42.16 kcal Atomic # 7 Polarization: -130.50 SS G_CDS: -9.92 Total: -140.42 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.97 Total: -29.87 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -70.04 0.50 -69.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.909 kcal (2) G-P(sol) polarization free energy of solvation -70.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds