Wall clock time and date at job start Tue Mar 31 2020 07:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00146 * 2 1 4 4 H 1.48501 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47077 * 299.99460 * 3 2 1 6 6 H 1.48502 * 109.47346 * 59.99743 * 3 2 1 7 7 C 1.38814 * 119.99529 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99794 * 196.92255 * 7 2 1 9 9 N 1.36934 * 120.00318 * 16.92842 * 7 2 1 10 10 C 1.47145 * 120.98404 * 206.24112 * 9 7 2 11 11 C 1.53299 * 108.38573 * 230.51314 * 10 9 7 12 12 O 1.42965 * 109.26284 * 307.71764 * 11 10 9 13 13 C 1.42964 * 114.16714 * 62.49591 * 12 11 10 14 14 H 1.09000 * 109.50921 * 57.45464 * 13 12 11 15 15 C 1.52996 * 109.50858 * 177.55254 * 13 12 11 16 16 N 1.46497 * 109.47420 * 299.90018 * 15 13 12 17 17 C 1.34781 * 120.00224 * 180.02562 * 16 15 13 18 18 O 1.21281 * 119.99530 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99856 * 180.02562 * 17 16 15 20 20 C 1.53001 * 115.55638 * 180.10672 * 19 17 16 21 21 C 1.52993 * 117.50226 * 102.93468 * 20 19 17 22 22 C 1.52997 * 117.50361 * 34.30676 * 20 19 17 23 23 C 1.52992 * 117.49966 * 34.41594 * 19 17 16 24 24 C 1.53002 * 60.03180 * 252.52068 * 23 19 17 25 25 C 1.47158 * 120.98063 * 26.21209 * 9 7 2 26 26 H 0.96998 * 119.99928 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.68022 * 350.23100 * 10 9 7 28 28 H 1.08999 * 109.68643 * 110.75081 * 10 9 7 29 29 H 1.08995 * 109.51612 * 67.61679 * 11 10 9 30 30 H 1.08996 * 109.51442 * 187.77328 * 11 10 9 31 31 H 1.09003 * 109.46992 * 179.90543 * 15 13 12 32 32 H 1.08996 * 109.47309 * 59.90295 * 15 13 12 33 33 H 0.97007 * 119.99771 * 0.02562 * 16 15 13 34 34 H 1.09009 * 115.54629 * 248.63858 * 20 19 17 35 35 H 1.09010 * 117.50043 * 359.97438 * 21 20 19 36 36 H 1.08997 * 117.50784 * 145.01552 * 21 20 19 37 37 H 1.09000 * 117.50152 * 214.97964 * 22 20 19 38 38 H 1.09006 * 117.49771 * 0.02562 * 22 20 19 39 39 H 1.09007 * 117.50034 * 145.02314 * 23 19 17 40 40 H 1.08995 * 117.50503 * 0.02562 * 23 19 17 41 41 H 1.08999 * 117.49556 * 107.48066 * 24 23 19 42 42 H 1.08999 * 117.50114 * 252.47751 * 24 23 19 43 43 H 1.08996 * 109.68289 * 9.76681 * 25 9 7 44 44 H 1.08996 * 109.70981 * 249.22931 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2224 0.2728 9 7 1.3700 -2.3626 -0.3442 10 6 1.8339 -3.6633 0.1637 11 6 1.9812 -4.6215 -1.0239 12 8 0.7655 -4.6307 -1.7762 13 6 0.4244 -3.3677 -2.3527 14 1 1.2373 -3.0294 -2.9953 15 6 -0.8546 -3.5123 -3.1798 16 7 -0.6374 -4.4912 -4.2478 17 6 -1.6335 -4.7824 -5.1079 18 8 -2.7097 -4.2343 -4.9972 19 6 -1.4102 -5.7898 -6.2062 20 6 -2.6075 -6.0408 -7.1250 21 6 -2.5836 -5.3913 -8.5101 22 6 -3.5250 -4.8550 -7.4298 23 6 -0.4927 -6.9756 -5.9014 24 6 -0.0138 -5.8576 -6.8297 25 6 0.1974 -2.3454 -1.2332 26 1 -0.4850 0.8400 -0.0004 27 1 2.7973 -3.5417 0.6589 28 1 1.1059 -4.0625 0.8699 29 1 2.8003 -4.2882 -1.6612 30 1 2.1900 -5.6264 -0.6572 31 1 -1.1150 -2.5487 -3.6176 32 1 -1.6669 -3.8506 -2.5366 33 1 0.2233 -4.9298 -4.3361 34 1 -3.0687 -7.0247 -7.0381 35 1 -1.7149 -4.7848 -8.7666 36 1 -3.0288 -5.9478 -9.3348 37 1 -4.5897 -5.0588 -7.5438 38 1 -3.2754 -3.8959 -6.9760 39 1 -0.7420 -7.9347 -6.3555 40 1 -0.0509 -7.0274 -4.9063 41 1 0.7428 -5.1737 -6.4452 42 1 0.0522 -6.0812 -7.8945 43 1 0.0771 -1.3510 -1.6630 44 1 -0.6960 -2.6118 -0.6684 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753654693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:56 Heat of formation + Delta-G solvation = -3.862184 kcal Electronic energy + Delta-G solvation = -24253.370746 eV Core-core repulsion = 20787.309919 eV Total energy + Delta-G solvation = -3466.060827 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.38352 -38.62770 -37.39626 -35.60238 -34.60818 -34.13584 -31.36167 -30.80135 -27.46729 -25.94458 -24.72288 -23.33191 -22.85294 -22.39524 -21.98016 -21.20822 -19.90373 -19.02317 -17.17349 -16.76017 -16.30470 -16.01870 -15.46622 -15.17683 -14.82293 -14.48306 -14.38296 -14.19184 -13.85000 -13.37644 -13.27303 -12.91589 -12.83231 -12.30580 -12.26335 -11.86836 -11.59760 -11.47594 -11.14991 -11.09952 -10.91132 -10.87879 -10.74796 -10.44352 -10.27719 -10.11073 -10.05422 -9.99356 -9.69541 -9.45756 -9.09413 -8.82868 -8.58493 -6.79512 -5.87809 -3.31705 2.52872 3.19975 3.32089 3.39819 3.41766 3.66462 3.90743 4.22125 4.34297 4.40706 4.43139 4.65809 4.85910 4.95297 5.14870 5.15821 5.28789 5.33057 5.35741 5.51713 5.55742 5.59477 5.64798 5.65949 5.81779 5.82830 5.89740 5.92631 5.99482 6.04437 6.09183 6.21292 6.29727 6.36265 6.47571 6.67143 6.74873 7.03204 7.44421 7.67474 7.68756 7.80195 8.29410 8.39520 9.07254 9.70272 10.27167 11.20274 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.003566 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.618639 B = 7849.585921 C = 8550.409376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.390 6.390 13 C 0.055 3.945 14 H 0.055 0.945 15 C 0.134 3.866 16 N -0.720 5.720 17 C 0.544 3.456 18 O -0.533 6.533 19 C -0.126 4.126 20 C -0.112 4.112 21 C -0.184 4.184 22 C -0.153 4.153 23 C -0.152 4.152 24 C -0.157 4.157 25 C 0.153 3.847 26 H 0.256 0.744 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.400 0.600 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.061 -13.227 -13.970 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.004 4.004 14 H 0.073 0.927 15 C 0.010 3.990 16 N -0.371 5.371 17 C 0.330 3.670 18 O -0.410 6.410 19 C -0.130 4.130 20 C -0.131 4.131 21 C -0.221 4.221 22 C -0.190 4.190 23 C -0.190 4.190 24 C -0.194 4.194 25 C 0.026 3.974 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.234 0.766 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.923 -12.806 -13.855 18.889 hybrid contribution 0.994 0.840 0.172 1.313 sum 0.071 -11.966 -13.682 18.177 Atomic orbital electron populations 1.70030 1.05252 1.25694 1.53523 1.25068 0.95362 0.98530 1.00657 0.86192 0.79280 0.83701 0.77413 1.20225 1.21414 1.21582 1.19225 0.92666 0.84453 1.42263 0.91296 1.44060 1.33735 1.01397 1.52656 1.21600 0.98631 0.87559 0.93961 1.23006 0.86163 0.99616 0.94006 1.87775 1.42247 1.31541 1.69419 1.23146 0.94978 0.86455 0.95827 0.92713 1.21414 0.97702 0.92313 0.87575 1.45948 1.15595 1.44326 1.31221 1.19427 0.84011 0.81977 0.81595 1.90665 1.24956 1.52603 1.72794 1.21013 0.92555 1.00341 0.99052 1.21306 0.97666 0.98357 0.95728 1.23051 1.03037 1.04345 0.91676 1.23033 0.96172 0.99190 1.00589 1.23124 1.01060 0.93361 1.01418 1.23159 0.94362 1.01835 1.00032 1.21303 0.89482 0.97593 0.89015 0.93427 0.91967 0.95544 0.93886 0.90003 0.90024 0.90717 0.76587 0.87491 0.88904 0.89022 0.89196 0.87139 0.87655 0.87827 0.88151 0.87538 0.88582 0.95047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 11.14 55.49 0.62 -25.13 16 2 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 3 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.26 -6.91 9.65 -15.06 -0.15 -7.05 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.59 -14.72 3.05 -171.83 -0.52 -15.24 16 10 C 0.11 2.24 6.74 -3.53 -0.02 2.21 16 11 C 0.05 0.86 6.98 37.31 0.26 1.12 16 12 O -0.39 -7.13 10.14 -35.23 -0.36 -7.49 16 13 C 0.06 1.04 2.86 -26.58 -0.08 0.96 16 14 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 15 C 0.13 2.28 5.37 -4.05 -0.02 2.26 16 16 N -0.72 -10.39 5.25 -60.30 -0.32 -10.71 16 17 C 0.54 8.13 7.39 -10.98 -0.08 8.05 16 18 O -0.53 -9.76 13.82 5.56 0.08 -9.68 16 19 C -0.13 -1.43 2.40 -155.63 -0.37 -1.80 16 20 C -0.11 -1.22 5.73 -90.62 -0.52 -1.74 16 21 C -0.18 -1.74 9.75 -26.73 -0.26 -2.00 16 22 C -0.15 -1.82 9.09 -26.73 -0.24 -2.06 16 23 C -0.15 -1.34 9.59 -26.73 -0.26 -1.60 16 24 C -0.16 -1.36 9.10 -26.69 -0.24 -1.60 16 25 C 0.15 3.58 4.73 -3.53 -0.02 3.56 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.40 5.01 6.54 -40.82 -0.27 4.75 16 34 H 0.11 1.05 8.14 -51.92 -0.42 0.63 16 35 H 0.09 0.86 7.80 -51.92 -0.40 0.45 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.11 1.59 6.29 -51.93 -0.33 1.26 16 39 H 0.11 0.77 8.14 -51.92 -0.42 0.34 16 40 H 0.10 0.93 7.55 -51.93 -0.39 0.53 16 41 H 0.10 0.85 7.54 -51.93 -0.39 0.46 16 42 H 0.11 0.78 7.80 -51.93 -0.41 0.38 16 43 H 0.10 2.48 6.14 -51.93 -0.32 2.16 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 352.01 15.07 5.30 5.30 Total: -1.00 -30.92 352.01 -9.43 -40.36 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.12 Total: 6.04 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.09 Total: 0.32 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.22 Total: -51.08 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.28 Total: -17.17 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.92 -9.43 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753654693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.493 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds