Wall clock time and date at job start Tue Mar 31 2020 07:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99619 * 2 1 4 4 H 1.48501 * 109.46760 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47363 * 299.99310 * 3 2 1 6 6 H 1.48494 * 109.47372 * 59.99925 * 3 2 1 7 7 C 1.38812 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99244 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00226 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99950 * 174.60826 * 9 7 2 11 11 C 1.52998 * 110.01345 * 301.45861 * 10 9 7 12 12 N 1.46495 * 109.47283 * 303.90276 * 11 10 9 13 13 C 1.34773 * 120.00117 * 175.13069 * 12 11 10 14 14 O 1.21616 * 120.00105 * 359.97438 * 13 12 11 15 15 C 1.47105 * 120.00201 * 180.02562 * 13 12 11 16 16 C 1.32092 * 118.87863 * 179.97438 * 15 13 12 17 17 C 1.50266 * 122.57642 * 180.39451 * 16 15 13 18 18 O 1.42886 * 110.09411 * 344.34398 * 17 16 15 19 19 C 1.43276 * 113.10020 * 50.53282 * 18 17 16 20 20 C 1.50418 * 118.87721 * 359.97438 * 15 13 12 21 21 C 1.54267 * 110.07357 * 62.87377 * 10 9 7 22 22 C 1.54892 * 104.19241 * 95.69916 * 21 10 9 23 23 C 1.54892 * 102.74995 * 37.94203 * 22 21 10 24 24 C 1.53877 * 110.03292 * 180.02562 * 10 9 7 25 25 H 0.97003 * 120.00476 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00199 * 354.60440 * 9 7 2 27 27 H 1.08999 * 109.47051 * 183.90142 * 11 10 9 28 28 H 1.09005 * 109.47505 * 63.90601 * 11 10 9 29 29 H 0.97000 * 119.99936 * 355.13008 * 12 11 10 30 30 H 1.07996 * 118.70845 * 0.36286 * 16 15 13 31 31 H 1.09006 * 109.36346 * 224.15656 * 17 16 15 32 32 H 1.08997 * 109.26395 * 104.47885 * 17 16 15 33 33 H 1.09001 * 109.64014 * 171.46678 * 19 18 17 34 34 H 1.09005 * 109.63456 * 50.85371 * 19 18 17 35 35 H 1.08997 * 109.44904 * 43.28838 * 20 15 13 36 36 H 1.09008 * 109.45220 * 283.35898 * 20 15 13 37 37 H 1.08990 * 110.48651 * 214.37359 * 21 10 9 38 38 H 1.09002 * 110.48613 * 337.01928 * 21 10 9 39 39 H 1.09004 * 110.75760 * 279.62482 * 22 21 10 40 40 H 1.08996 * 110.75526 * 156.25803 * 22 21 10 41 41 H 1.09003 * 110.48227 * 203.38053 * 23 22 21 42 42 H 1.08998 * 110.48623 * 80.73427 * 23 22 21 43 43 H 1.09004 * 110.02968 * 359.95263 * 24 10 9 44 44 H 1.08998 * 110.03137 * 121.37777 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0533 -3.6540 -0.1181 11 6 2.8624 -3.6732 -1.4165 12 7 1.9683 -3.4364 -2.5526 13 6 2.4757 -3.3118 -3.7949 14 8 3.6759 -3.3956 -3.9728 15 6 1.5780 -3.0735 -4.9357 16 6 2.0992 -2.9544 -6.1436 17 6 1.2612 -2.7015 -7.3650 18 8 -0.1126 -2.9751 -7.0830 19 6 -0.5829 -2.3257 -5.8956 20 6 0.0979 -2.9737 -4.6868 21 6 2.9916 -3.8408 1.0920 22 6 2.1744 -4.7156 2.0748 23 6 1.4384 -5.6965 1.1285 24 6 1.0659 -4.8339 -0.0939 25 1 -0.4851 0.8400 -0.0004 26 1 0.3588 -2.3899 0.0792 27 1 3.3445 -4.6441 -1.5298 28 1 3.6220 -2.8921 -1.3829 29 1 1.0111 -3.3692 -2.4107 30 1 3.1695 -3.0417 -6.2577 31 1 1.5994 -3.3473 -8.1754 32 1 1.3681 -1.6591 -7.6649 33 1 -1.6633 -2.4461 -5.8156 34 1 -0.3312 -1.2658 -5.9336 35 1 -0.0808 -2.3653 -3.8002 36 1 -0.3120 -3.9715 -4.5306 37 1 3.9040 -4.3556 0.7914 38 1 3.2273 -2.8774 1.5443 39 1 1.4612 -4.1078 2.6317 40 1 2.8354 -5.2556 2.7527 41 1 0.5406 -6.0873 1.6075 42 1 2.1001 -6.5109 0.8337 43 1 0.0453 -4.4646 0.0070 44 1 1.1625 -5.4205 -1.0075 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753662105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:13 Heat of formation + Delta-G solvation = -66.659553 kcal Electronic energy + Delta-G solvation = -24766.317859 eV Core-core repulsion = 21297.533934 eV Total energy + Delta-G solvation = -3468.783925 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.99655 -38.86217 -37.96068 -34.15828 -33.64845 -33.28564 -31.12398 -30.57910 -28.30430 -27.97629 -26.09000 -24.52516 -23.63396 -23.08501 -21.04245 -20.07497 -18.84711 -18.06770 -17.45580 -16.98190 -16.34994 -15.67959 -15.41395 -15.15572 -14.90528 -14.57738 -14.48748 -14.04871 -13.55407 -13.43392 -13.35805 -12.88717 -12.71457 -12.57787 -12.41288 -11.90250 -11.51903 -11.45443 -11.13220 -10.83504 -10.78915 -10.74514 -10.66312 -10.52568 -10.25462 -10.16228 -10.02581 -9.87016 -9.68047 -9.34922 -9.04649 -8.94193 -8.40487 -7.04374 -5.84286 -3.12996 1.51566 3.38603 3.46580 3.47434 3.56487 3.69225 3.89529 4.53732 4.73430 4.83564 4.87327 5.08628 5.10529 5.19626 5.21571 5.24120 5.31166 5.52715 5.57930 5.65072 5.69551 5.74003 5.78019 5.90200 5.91996 5.92613 6.07081 6.15759 6.23297 6.28943 6.34315 6.41771 6.53172 6.58598 6.60413 6.75086 6.79969 6.98272 6.99781 7.09233 7.68536 8.07166 8.34350 8.69897 9.46500 9.99941 10.35570 11.37719 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.005780 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.641365 B = 4843.071837 C = 6189.255933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.711 5.711 10 C 0.188 3.812 11 C 0.119 3.881 12 N -0.692 5.692 13 C 0.545 3.455 14 O -0.560 6.560 15 C -0.151 4.151 16 C -0.131 4.131 17 C 0.088 3.912 18 O -0.381 6.381 19 C 0.061 3.939 20 C -0.123 4.123 21 C -0.131 4.131 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.126 4.126 25 H 0.254 0.746 26 H 0.384 0.616 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.403 0.597 30 H 0.133 0.867 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 -9.277 -7.353 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.731 3.269 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.362 4.362 8 H 0.088 0.912 9 N -0.352 5.352 10 C 0.096 3.904 11 C -0.007 4.007 12 N -0.341 5.341 13 C 0.332 3.668 14 O -0.441 6.441 15 C -0.154 4.154 16 C -0.151 4.151 17 C 0.012 3.988 18 O -0.299 6.299 19 C -0.016 4.016 20 C -0.161 4.161 21 C -0.172 4.172 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.164 4.164 25 H 0.063 0.937 26 H 0.219 0.781 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.238 0.762 30 H 0.151 0.849 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.034 -9.304 -7.557 11.987 hybrid contribution -0.003 1.322 0.388 1.378 sum 0.031 -7.982 -7.170 10.730 Atomic orbital electron populations 1.69653 1.04950 1.25474 1.57856 1.24669 0.95426 0.97452 1.02927 0.86224 0.79040 0.84498 0.77115 1.20592 1.21984 1.21935 1.19133 0.91048 0.83822 1.42173 0.91237 1.42551 1.05955 0.99452 1.87250 1.20471 0.91343 0.87204 0.91374 1.21901 0.93217 0.99580 0.86022 1.45659 1.11520 1.70787 1.06086 1.18333 0.87816 0.77115 0.83500 1.90727 1.15484 1.52393 1.85466 1.20977 0.95663 1.04769 0.94013 1.23593 1.01833 0.95716 0.93975 1.21533 0.80961 1.01228 0.95107 1.88093 1.25146 1.72604 1.44095 1.22664 0.99231 0.96023 0.83643 1.21117 0.91574 1.02978 1.00399 1.22820 0.97310 1.00313 0.96728 1.22387 0.98753 0.97069 0.97240 1.22285 0.99610 0.97628 0.96288 1.22420 0.99828 0.96354 0.97829 0.93652 0.78135 0.93111 0.91417 0.76151 0.84907 0.87395 0.91213 0.88035 0.92337 0.88554 0.89585 0.92918 0.90278 0.91389 0.92715 0.92334 0.92279 0.91283 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.21 13.06 55.49 0.72 -25.48 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.23 -5.89 8.39 -15.06 -0.13 -6.02 16 8 H 0.07 1.81 7.23 -52.48 -0.38 1.43 16 9 N -0.71 -15.69 4.76 -46.19 -0.22 -15.91 16 10 C 0.19 3.38 0.68 -130.70 -0.09 3.29 16 11 C 0.12 2.22 3.99 -4.05 -0.02 2.20 16 12 N -0.69 -12.47 5.05 -61.49 -0.31 -12.78 16 13 C 0.55 10.22 7.73 -12.66 -0.10 10.12 16 14 O -0.56 -12.13 16.05 5.26 0.08 -12.04 16 15 C -0.15 -2.35 5.86 -103.09 -0.60 -2.96 16 16 C -0.13 -1.82 9.58 -36.44 -0.35 -2.16 16 17 C 0.09 0.97 7.04 35.80 0.25 1.23 16 18 O -0.38 -4.83 10.83 -35.23 -0.38 -5.21 16 19 C 0.06 0.72 6.88 37.22 0.26 0.98 16 20 C -0.12 -1.64 5.29 -27.96 -0.15 -1.79 16 21 C -0.13 -2.24 5.94 -25.07 -0.15 -2.39 16 22 C -0.12 -1.73 6.91 -24.74 -0.17 -1.90 16 23 C -0.12 -1.61 6.83 -25.12 -0.17 -1.78 16 24 C -0.13 -1.90 5.80 -25.66 -0.15 -2.05 16 25 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.38 9.06 7.28 -40.82 -0.30 8.76 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.46 7.49 -51.93 -0.39 1.07 16 29 H 0.40 6.89 6.30 -40.82 -0.26 6.63 16 30 H 0.13 1.89 7.29 -52.49 -0.38 1.51 16 31 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.10 1.39 7.31 -51.93 -0.38 1.01 16 36 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 37 H 0.05 0.82 7.85 -51.93 -0.41 0.42 16 38 H 0.08 1.55 7.12 -51.93 -0.37 1.18 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.07 7.44 -51.93 -0.39 0.69 16 44 H 0.06 0.86 7.55 -51.93 -0.39 0.46 16 LS Contribution 349.58 15.07 5.27 5.27 Total: -1.00 -30.18 349.58 -8.52 -38.70 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -7.00 Total: 14.03 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.66 Total: -3.58 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.19 Total: -54.17 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.30 Total: -17.25 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.18 -8.52 -38.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753662105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.961 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds