Wall clock time and date at job start Tue Mar 31 2020 07:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00390 * 2 1 4 4 H 1.48496 * 109.46963 * 270.00098 * 3 2 1 5 5 H 1.48497 * 109.46789 * 30.00003 * 3 2 1 6 6 H 1.48503 * 109.47181 * 149.99853 * 3 2 1 7 7 C 1.38812 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00267 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.05640 * 180.02562 * 9 7 2 11 11 C 1.53503 * 87.98596 * 207.07967 * 10 9 7 12 12 O 1.42899 * 114.20486 * 87.51452 * 11 10 9 13 13 C 1.52995 * 114.20769 * 220.34643 * 11 10 9 14 14 N 1.46505 * 109.46872 * 179.97438 * 13 11 10 15 15 C 1.34778 * 119.99875 * 179.97438 * 14 13 11 16 16 O 1.21282 * 119.99817 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99809 * 179.97438 * 15 14 13 18 18 C 1.52311 * 115.91095 * 111.83472 * 17 15 14 19 19 C 1.51362 * 60.10059 * 106.18739 * 18 17 15 20 20 H 1.08999 * 115.85469 * 251.98848 * 19 18 17 21 21 C 1.52536 * 117.52799 * 111.34727 * 19 18 17 22 22 C 1.52880 * 110.48414 * 270.70608 * 21 19 18 23 23 C 1.53302 * 108.58003 * 53.45645 * 22 21 19 24 24 C 1.52073 * 114.64231 * 325.58839 * 17 15 14 25 25 C 1.47060 * 136.05780 * 359.94372 * 9 7 2 26 26 H 0.97003 * 119.99575 * 359.97438 * 1 2 3 27 27 H 1.09000 * 113.46827 * 321.85571 * 10 9 7 28 28 H 1.09003 * 113.47151 * 92.30361 * 10 9 7 29 29 H 0.96694 * 114.00198 * 180.02562 * 12 11 10 30 30 H 1.08999 * 109.47050 * 299.99430 * 13 11 10 31 31 H 1.08998 * 109.47301 * 59.99694 * 13 11 10 32 32 H 0.96999 * 119.99974 * 359.97438 * 14 13 11 33 33 H 1.08996 * 117.53913 * 213.90266 * 18 17 15 34 34 H 1.08996 * 117.53532 * 359.14802 * 18 17 15 35 35 H 1.09003 * 110.05122 * 149.84769 * 21 19 18 36 36 H 1.09001 * 108.22084 * 30.40320 * 21 19 18 37 37 H 1.09003 * 109.62116 * 293.73348 * 22 21 19 38 38 H 1.09002 * 109.62481 * 173.18810 * 22 21 19 39 39 H 1.08997 * 109.61879 * 165.82519 * 23 22 21 40 40 H 1.09012 * 109.61449 * 45.28955 * 23 22 21 41 41 H 1.08999 * 109.26297 * 314.63466 * 24 17 15 42 42 H 1.09002 * 109.26381 * 74.10068 * 24 17 15 43 43 H 1.09006 * 113.47077 * 267.69951 * 25 9 7 44 44 H 1.08996 * 113.47134 * 38.13429 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.6799 -3.8154 0.0015 11 6 0.3417 -4.0925 -0.6978 12 8 0.3953 -4.0007 -2.1229 13 6 -0.3811 -5.3440 -0.1959 14 7 -1.6389 -5.5084 -0.9289 15 6 -2.4478 -6.5508 -0.6538 16 8 -2.1347 -7.3523 0.2009 17 6 -3.7419 -6.7196 -1.4074 18 6 -3.8124 -7.9143 -2.3495 19 6 -4.5709 -7.9403 -1.0399 20 1 -4.1710 -8.6025 -0.2720 21 6 -6.0941 -7.8941 -1.1063 22 6 -6.5865 -6.4467 -1.0951 23 6 -5.8738 -5.6797 -2.2149 24 6 -4.4308 -5.4173 -1.7841 25 6 -0.0877 -2.7948 0.0011 26 1 -0.4850 0.8401 0.0004 27 1 2.5481 -4.0475 -0.6153 28 1 1.7447 -4.2460 1.0007 29 1 -0.4491 -4.1753 -2.5603 30 1 0.2506 -6.2176 -0.3570 31 1 -0.5921 -5.2395 0.8684 32 1 -1.8894 -4.8672 -1.6122 33 1 -4.3900 -7.7994 -3.2667 34 1 -2.9298 -8.5494 -2.4249 35 1 -6.5216 -8.4276 -0.2574 36 1 -6.4097 -8.3758 -2.0318 37 1 -6.3552 -5.9889 -0.1333 38 1 -7.6631 -6.4249 -1.2642 39 1 -6.3818 -4.7313 -2.3895 40 1 -5.8806 -6.2750 -3.1280 41 1 -4.4283 -4.7474 -0.9243 42 1 -3.8895 -4.9487 -2.6061 43 1 -0.4934 -2.9537 1.0003 44 1 -0.7227 -2.1590 -0.6158 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754774792.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:31 Heat of formation + Delta-G solvation = -10.065150 kcal Electronic energy + Delta-G solvation = -24257.171358 eV Core-core repulsion = 20790.841550 eV Total energy + Delta-G solvation = -3466.329808 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90384 -39.25097 -38.00999 -35.04966 -34.03288 -33.34413 -32.06209 -31.17605 -28.66286 -26.35556 -24.98772 -24.78805 -23.68929 -21.89245 -21.59712 -20.59624 -19.44296 -18.77408 -17.83586 -16.78264 -16.09100 -15.85311 -15.24562 -15.10654 -14.69262 -14.38067 -14.15528 -14.13715 -13.90584 -13.60197 -13.52738 -13.19048 -12.81491 -12.60687 -12.26951 -12.24339 -12.13414 -11.81826 -11.25007 -11.11896 -11.08654 -10.91434 -10.73046 -10.71333 -10.45384 -10.26490 -10.00244 -9.87488 -9.64772 -9.49239 -9.15711 -8.88090 -8.83934 -6.91263 -5.78433 -3.10215 2.51284 3.12450 3.39506 3.43770 3.45736 3.61092 4.29071 4.42043 4.42833 4.47648 4.55839 4.61859 4.82214 4.95255 4.98549 5.03037 5.21072 5.23185 5.28477 5.31153 5.39108 5.51335 5.57763 5.61188 5.66567 5.75692 5.82605 5.86388 5.90061 5.97021 6.03855 6.06523 6.15561 6.30614 6.39556 6.51746 6.54960 6.97938 7.14030 7.47932 7.49113 7.93999 8.10065 8.25817 9.01604 9.68409 10.59293 11.39425 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024987 B = 0.003396 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.317211 B = 8242.598800 C = 8908.326849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.214 4.214 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.134 3.866 11 C 0.057 3.943 12 O -0.521 6.521 13 C 0.107 3.893 14 N -0.719 5.719 15 C 0.547 3.453 16 O -0.543 6.543 17 C -0.147 4.147 18 C -0.151 4.151 19 C -0.114 4.114 20 H 0.113 0.887 21 C -0.089 4.089 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.085 4.085 25 C 0.137 3.863 26 H 0.253 0.747 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.360 0.640 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.398 0.602 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.033 0.967 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.233 -14.951 -5.482 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.341 4.341 8 H 0.100 0.900 9 N -0.325 5.325 10 C 0.007 3.993 11 C 0.014 3.986 12 O -0.325 6.325 13 C -0.017 4.017 14 N -0.372 5.372 15 C 0.333 3.667 16 O -0.420 6.420 17 C -0.150 4.150 18 C -0.189 4.189 19 C -0.133 4.133 20 H 0.131 0.869 21 C -0.126 4.126 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.122 4.122 25 C 0.010 3.990 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.206 0.794 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.233 0.767 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.273 -14.975 -4.722 19.930 hybrid contribution -0.150 1.144 -0.282 1.188 sum -12.423 -13.831 -5.004 19.253 Atomic orbital electron populations 1.69815 1.05047 1.25318 1.56701 1.24781 0.95726 0.97532 1.02414 0.86073 0.78557 0.83211 0.77645 1.21475 1.21634 1.20634 1.18917 0.90152 0.81193 1.43814 0.89975 1.45253 1.02295 0.99112 1.85797 1.22384 0.93722 0.87020 0.96169 1.23436 0.99820 0.93416 0.81957 1.86642 1.35204 1.93593 1.17018 1.21944 0.84027 0.98678 0.97076 1.45886 1.22003 1.28054 1.41209 1.19615 0.84007 0.80631 0.82461 1.90681 1.74689 1.43541 1.33114 1.21041 0.96164 0.92764 1.05005 1.22840 1.03243 0.98243 0.94557 1.21828 0.94016 0.98182 0.99259 0.86890 1.21052 0.92218 0.97140 1.02196 1.21591 0.99465 0.95393 0.99479 1.21586 0.94944 1.00659 0.98460 1.20853 0.95619 0.93892 1.01871 1.22748 0.89651 0.89875 0.96685 0.93695 0.93054 0.93276 0.79442 0.91108 0.90217 0.76660 0.87832 0.88458 0.91216 0.91561 0.91430 0.91718 0.91203 0.91672 0.90610 0.90887 0.94929 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.36 11.51 55.49 0.64 -26.72 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.21 -6.11 10.75 -15.06 -0.16 -6.27 16 8 H 0.08 2.26 7.83 -52.48 -0.41 1.85 16 9 N -0.60 -15.65 3.78 -184.74 -0.70 -16.35 16 10 C 0.13 2.81 8.11 -8.51 -0.07 2.74 16 11 C 0.06 1.05 1.73 -90.09 -0.16 0.89 16 12 O -0.52 -9.63 13.55 -35.23 -0.48 -10.11 16 13 C 0.11 1.67 5.43 -4.04 -0.02 1.65 16 14 N -0.72 -9.56 5.24 -60.29 -0.32 -9.87 16 15 C 0.55 7.64 7.27 -10.99 -0.08 7.56 16 16 O -0.54 -9.50 16.07 5.56 0.09 -9.41 16 17 C -0.15 -1.55 2.54 -156.96 -0.40 -1.95 16 18 C -0.15 -1.38 9.21 -27.91 -0.26 -1.63 16 19 C -0.11 -1.13 5.49 -92.16 -0.51 -1.64 16 20 H 0.11 1.32 7.50 -51.93 -0.39 0.93 16 21 C -0.09 -0.69 5.87 -27.03 -0.16 -0.84 16 22 C -0.12 -0.93 5.94 -26.64 -0.16 -1.08 16 23 C -0.12 -0.89 5.70 -26.64 -0.15 -1.04 16 24 C -0.08 -0.76 4.75 -27.27 -0.13 -0.89 16 25 C 0.14 3.16 6.82 -8.50 -0.06 3.10 16 26 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 29 H 0.36 4.95 7.21 45.56 0.33 5.28 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.30 7.89 -51.93 -0.41 0.89 16 32 H 0.40 4.52 5.96 -40.82 -0.24 4.28 16 33 H 0.10 0.76 7.28 -51.93 -0.38 0.38 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 37 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.44 7.12 -51.92 -0.37 0.07 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.58 7.81 -51.93 -0.41 0.17 16 43 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 44 H 0.08 1.95 7.12 -51.93 -0.37 1.58 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -34.13 349.27 -9.34 -43.47 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.41 Total: 6.19 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.40 Total: 0.25 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.38 Total: -52.94 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.39 Total: -19.53 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.13 -9.34 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754774792.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.401 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds