Wall clock time and date at job start Tue Mar 31 2020 07:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47154 * 2 1 4 4 C 1.53001 * 109.47154 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47490 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00534 * 180.02562 * 5 4 3 7 7 O 1.21282 * 119.99842 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00487 * 180.02562 * 6 5 4 9 9 N 1.46896 * 109.47369 * 177.35252 * 8 6 5 10 10 C 1.46904 * 111.00183 * 72.54844 * 9 8 6 11 11 C 1.50694 * 109.47528 * 190.00257 * 10 9 8 12 12 H 1.08007 * 120.00146 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00206 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99927 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47379 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47098 * 120.00542 * 15 13 11 18 18 H 1.48500 * 109.47039 * 240.00180 * 15 13 11 19 19 C 1.46899 * 111.00139 * 196.50142 * 9 8 6 20 20 C 1.50694 * 109.47001 * 76.31114 * 19 9 8 21 21 C 1.34509 * 125.79315 * 84.67194 * 20 19 9 22 22 C 1.41390 * 106.84464 * 179.97438 * 21 20 19 23 23 C 1.34515 * 106.83482 * 359.97438 * 22 21 20 24 24 O 1.34302 * 125.78746 * 264.35841 * 20 19 9 25 25 H 1.09007 * 109.46919 * 59.99790 * 1 2 3 26 26 H 1.08993 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47144 * 300.00265 * 1 2 3 28 28 H 1.08998 * 109.46893 * 240.00224 * 2 1 3 29 29 H 1.08998 * 109.46833 * 120.00023 * 2 1 3 30 30 H 1.08998 * 109.47037 * 60.00313 * 3 2 1 31 31 H 1.08998 * 109.47269 * 299.99756 * 3 2 1 32 32 H 1.08998 * 109.47144 * 59.99735 * 4 3 2 33 33 H 1.09007 * 109.46919 * 300.00210 * 4 3 2 34 34 H 0.97000 * 120.00045 * 0.02562 * 5 4 3 35 35 H 1.08996 * 109.47310 * 57.34878 * 8 6 5 36 36 H 1.09003 * 109.47044 * 297.35413 * 8 6 5 37 37 H 1.09009 * 109.46937 * 309.99862 * 10 9 8 38 38 H 1.09001 * 109.47294 * 69.99888 * 10 9 8 39 39 H 0.96998 * 120.00381 * 179.97438 * 14 13 11 40 40 H 1.09003 * 109.46876 * 316.30510 * 19 9 8 41 41 H 1.09003 * 109.47292 * 196.31193 * 19 9 8 42 42 H 1.08001 * 126.57586 * 0.03149 * 21 20 19 43 43 H 1.07994 * 126.58198 * 179.97438 * 22 21 20 44 44 H 1.08004 * 125.78609 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 5.3835 3.0699 -0.0010 7 8 6.1716 2.1481 -0.0018 8 6 5.8859 4.4907 0.0003 9 7 7.3535 4.4911 0.0629 10 6 7.9351 4.0613 -1.2158 11 6 9.4155 3.8376 -1.0445 12 1 9.8782 3.9989 -0.0820 13 6 10.1793 3.4269 -2.1163 14 7 9.6161 3.2310 -3.2885 15 14 12.0145 3.1502 -1.9040 16 1 12.3992 3.4381 -0.4989 17 1 12.3430 1.7386 -2.2274 18 1 12.7602 4.0536 -2.8168 19 6 7.8633 5.8115 0.4558 20 6 7.6661 6.0057 1.9371 21 6 8.4995 5.5817 2.9039 22 6 7.9307 5.9756 4.1370 23 6 6.7840 6.6174 3.8497 24 8 6.6312 6.6367 2.5155 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9284 0.8892 34 1 3.4281 3.5609 0.0011 35 1 5.4851 5.0170 0.8665 36 1 5.5610 4.9917 -0.9116 37 1 7.4621 3.1330 -1.5365 38 1 7.7689 4.8325 -1.9680 39 1 10.1535 2.9425 -4.0427 40 1 7.3223 6.5863 -0.0876 41 1 8.9254 5.8761 0.2191 42 1 9.4260 5.0443 2.7650 43 1 8.3387 5.7958 5.1206 44 1 6.1035 7.0476 4.5697 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078666292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:10 Heat of formation + Delta-G solvation = -26.004853 kcal Electronic energy + Delta-G solvation = -23612.882380 eV Core-core repulsion = 20145.861374 eV Total energy + Delta-G solvation = -3467.021005 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.14998 -39.27296 -36.66880 -35.74617 -33.49909 -32.63603 -32.49319 -30.32173 -29.36444 -27.72105 -26.22611 -24.20917 -23.10310 -21.42448 -21.34446 -21.14555 -20.05071 -19.51674 -17.02518 -16.60280 -16.48602 -15.94662 -15.66176 -15.60943 -14.90780 -14.47219 -14.35664 -13.92939 -13.82199 -13.60989 -13.36744 -12.91015 -12.54483 -12.44486 -12.30978 -12.11137 -11.91448 -11.84431 -11.48891 -11.32455 -11.26577 -11.18295 -10.99637 -10.81148 -10.60525 -10.51424 -9.91737 -9.53594 -9.33200 -9.02185 -8.72049 -8.37978 -8.06155 -7.33924 -5.96428 -3.96379 2.10035 3.02390 3.24920 3.35574 3.37335 3.43527 3.45978 3.48599 4.48349 4.69396 4.74554 4.83981 4.99060 5.13921 5.20960 5.27344 5.38996 5.40109 5.42980 5.43944 5.50015 5.58866 5.68690 5.75064 5.76349 5.82063 5.94798 5.97117 6.09380 6.14968 6.18004 6.28173 6.40657 6.54591 6.74639 6.91413 7.17994 7.27450 7.57143 7.77412 7.88690 8.12189 8.16872 8.52370 8.82536 9.09478 9.66450 11.14910 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009499 B = 0.004656 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.043038 B = 6012.827572 C = 8432.520672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.130 4.130 4 C 0.121 3.879 5 N -0.745 5.745 6 C 0.511 3.489 7 O -0.498 6.498 8 C 0.036 3.964 9 N -0.513 5.513 10 C 0.193 3.807 11 C -0.502 4.502 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.286 1.286 19 C 0.138 3.862 20 C 0.010 3.990 21 C -0.197 4.197 22 C -0.212 4.212 23 C -0.063 4.063 24 O -0.185 6.185 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.394 0.606 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.050 0.950 38 H -0.011 1.011 39 H 0.260 0.740 40 H 0.040 0.960 41 H 0.122 0.878 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.648 2.851 9.622 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.003 4.003 5 N -0.401 5.401 6 C 0.296 3.704 7 O -0.370 6.370 8 C -0.095 4.095 9 N -0.238 5.238 10 C 0.069 3.931 11 C -0.541 4.541 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.212 1.212 19 C 0.010 3.990 20 C -0.041 4.041 21 C -0.217 4.217 22 C -0.231 4.231 23 C -0.130 4.130 24 O -0.082 6.082 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.227 0.773 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.007 0.993 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.140 0.860 42 H 0.166 0.834 43 H 0.159 0.841 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -15.068 1.880 9.613 17.972 hybrid contribution 0.481 0.582 -0.307 0.815 sum -14.587 2.462 9.305 17.477 Atomic orbital electron populations 1.21764 0.95717 1.01635 1.01764 1.21443 0.95848 0.96189 1.02623 1.21815 0.94643 0.97795 1.02523 1.21261 0.93046 0.83693 1.02291 1.46026 1.07364 1.08155 1.78507 1.20711 0.81506 0.92098 0.76099 1.90765 1.54620 1.45904 1.45666 1.21918 0.92644 0.93414 1.01564 1.61790 1.01689 1.23658 1.36696 1.19894 0.95490 0.95839 0.81879 1.21129 0.92072 1.44929 0.95973 0.91791 1.24951 0.98736 0.95617 0.95181 1.69965 1.35722 1.47311 1.00761 0.86466 0.85194 0.77782 0.78124 1.19624 1.21057 1.21211 1.20576 1.03451 0.90721 0.84241 1.22840 0.86975 0.97757 0.96501 1.21588 1.03058 1.05741 0.91306 1.21810 0.97435 1.04524 0.99330 1.23808 1.00606 1.06406 0.82185 1.83983 1.42908 1.61431 1.19830 0.92727 0.92715 0.92794 0.91575 0.91675 0.91493 0.91398 0.91714 0.91896 0.77281 0.89445 0.92593 0.93165 0.99284 0.93067 0.94203 0.86018 0.83449 0.84081 0.78876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.13 -1.16 5.33 -26.73 -0.14 -1.30 16 4 C 0.12 1.55 5.67 -4.04 -0.02 1.52 16 5 N -0.75 -10.41 5.56 -60.30 -0.33 -10.74 16 6 C 0.51 9.75 7.52 -10.99 -0.08 9.66 16 7 O -0.50 -12.14 14.83 5.56 0.08 -12.06 16 8 C 0.04 0.66 5.28 -4.98 -0.03 0.64 16 9 N -0.51 -11.31 4.05 -238.97 -0.97 -12.27 16 10 C 0.19 5.11 4.33 -4.98 -0.02 5.09 16 11 C -0.50 -14.30 8.23 -34.44 -0.28 -14.58 16 12 H 0.06 1.80 7.32 -52.48 -0.38 1.41 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 15 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 C 0.14 2.66 5.34 -4.98 -0.03 2.64 16 20 C 0.01 0.17 6.17 -35.63 -0.22 -0.05 16 21 C -0.20 -3.43 10.81 -39.70 -0.43 -3.86 16 22 C -0.21 -3.07 10.91 -39.70 -0.43 -3.50 16 23 C -0.06 -0.83 12.09 29.42 0.36 -0.48 16 24 O -0.18 -2.96 10.26 5.71 0.06 -2.90 16 25 H 0.05 0.37 8.14 -51.92 -0.42 -0.06 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.39 4.14 8.47 -40.82 -0.35 3.79 16 35 H 0.09 1.41 7.04 -51.93 -0.37 1.04 16 36 H 0.06 0.94 8.05 -51.93 -0.42 0.53 16 37 H 0.05 1.50 6.32 -51.92 -0.33 1.17 16 38 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.04 0.70 7.99 -51.93 -0.41 0.29 16 41 H 0.12 2.51 6.58 -51.93 -0.34 2.17 16 42 H 0.15 2.60 8.06 -52.49 -0.42 2.18 16 43 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.19 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -34.51 367.46 -8.36 -42.86 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.23 Total: 3.49 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.22 Total: -4.55 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.57 Total: -49.43 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.14 Total: -14.97 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.51 -8.36 -42.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.859 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds