Wall clock time and date at job start Tue Mar 31 2020 07:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47154 * 2 1 4 4 C 1.53001 * 109.47154 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47490 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00534 * 180.02562 * 5 4 3 7 7 O 1.21282 * 119.99842 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00487 * 180.02562 * 6 5 4 9 9 N 1.46896 * 109.47369 * 177.35252 * 8 6 5 10 10 C 1.46904 * 111.00183 * 72.54844 * 9 8 6 11 11 C 1.50694 * 109.47528 * 190.00257 * 10 9 8 12 12 H 1.08007 * 120.00146 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00206 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99927 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47379 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47098 * 120.00542 * 15 13 11 18 18 H 1.48500 * 109.47039 * 240.00180 * 15 13 11 19 19 C 1.46899 * 111.00139 * 196.50142 * 9 8 6 20 20 C 1.50694 * 109.47001 * 76.31114 * 19 9 8 21 21 C 1.34509 * 125.79315 * 84.67194 * 20 19 9 22 22 C 1.41390 * 106.84464 * 179.97438 * 21 20 19 23 23 C 1.34515 * 106.83482 * 359.97438 * 22 21 20 24 24 O 1.34302 * 125.78746 * 264.35841 * 20 19 9 25 25 H 1.09007 * 109.46919 * 59.99790 * 1 2 3 26 26 H 1.08993 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47144 * 300.00265 * 1 2 3 28 28 H 1.08998 * 109.46893 * 240.00224 * 2 1 3 29 29 H 1.08998 * 109.46833 * 120.00023 * 2 1 3 30 30 H 1.08998 * 109.47037 * 60.00313 * 3 2 1 31 31 H 1.08998 * 109.47269 * 299.99756 * 3 2 1 32 32 H 1.08998 * 109.47144 * 59.99735 * 4 3 2 33 33 H 1.09007 * 109.46919 * 300.00210 * 4 3 2 34 34 H 0.97000 * 120.00045 * 0.02562 * 5 4 3 35 35 H 1.08996 * 109.47310 * 57.34878 * 8 6 5 36 36 H 1.09003 * 109.47044 * 297.35413 * 8 6 5 37 37 H 1.09009 * 109.46937 * 309.99862 * 10 9 8 38 38 H 1.09001 * 109.47294 * 69.99888 * 10 9 8 39 39 H 0.96998 * 120.00381 * 179.97438 * 14 13 11 40 40 H 1.09003 * 109.46876 * 316.30510 * 19 9 8 41 41 H 1.09003 * 109.47292 * 196.31193 * 19 9 8 42 42 H 1.08001 * 126.57586 * 0.03149 * 21 20 19 43 43 H 1.07994 * 126.58198 * 179.97438 * 22 21 20 44 44 H 1.08004 * 125.78609 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 5.3835 3.0699 -0.0010 7 8 6.1716 2.1481 -0.0018 8 6 5.8859 4.4907 0.0003 9 7 7.3535 4.4911 0.0629 10 6 7.9351 4.0613 -1.2158 11 6 9.4155 3.8376 -1.0445 12 1 9.8782 3.9989 -0.0820 13 6 10.1793 3.4269 -2.1163 14 7 9.6161 3.2310 -3.2885 15 14 12.0145 3.1502 -1.9040 16 1 12.3992 3.4381 -0.4989 17 1 12.3430 1.7386 -2.2274 18 1 12.7602 4.0536 -2.8168 19 6 7.8633 5.8115 0.4558 20 6 7.6661 6.0057 1.9371 21 6 8.4995 5.5817 2.9039 22 6 7.9307 5.9756 4.1370 23 6 6.7840 6.6174 3.8497 24 8 6.6312 6.6367 2.5155 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9284 0.8892 34 1 3.4281 3.5609 0.0011 35 1 5.4851 5.0170 0.8665 36 1 5.5610 4.9917 -0.9116 37 1 7.4621 3.1330 -1.5365 38 1 7.7689 4.8325 -1.9680 39 1 10.1535 2.9425 -4.0427 40 1 7.3223 6.5863 -0.0876 41 1 8.9254 5.8761 0.2191 42 1 9.4260 5.0443 2.7650 43 1 8.3387 5.7958 5.1206 44 1 6.1035 7.0476 4.5697 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078666292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:10 Heat of formation + Delta-G solvation = -50.264400 kcal Electronic energy + Delta-G solvation = -23613.934352 eV Core-core repulsion = 20145.861374 eV Total energy + Delta-G solvation = -3468.072978 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.36984 -40.77777 -38.16349 -36.95135 -34.74165 -34.58439 -33.81588 -31.67008 -30.68167 -29.28679 -27.70422 -25.84936 -24.30148 -22.86589 -22.53603 -22.26626 -21.31820 -20.93739 -18.59576 -18.30982 -17.95725 -17.11938 -17.04028 -16.84957 -16.54738 -15.94521 -15.72537 -15.49636 -15.19689 -14.69982 -14.45696 -14.24395 -14.06150 -13.76693 -13.66019 -13.49675 -13.26001 -13.17021 -13.01031 -12.71688 -12.56128 -12.48783 -12.34589 -12.11243 -12.01112 -11.94064 -11.50471 -11.33392 -10.79066 -10.70906 -10.57046 -10.04978 -9.32895 -9.06836 -8.18423 -6.26257 0.87955 1.39163 1.41491 1.54191 1.73909 1.79428 2.12921 2.21615 2.41726 3.15135 3.39493 3.87106 3.87581 3.92972 4.01250 4.18360 4.21007 4.25232 4.28394 4.35724 4.44768 4.53088 4.64183 4.69809 4.72907 4.92718 4.94868 4.99660 5.07344 5.12274 5.16122 5.24761 5.25967 5.32472 5.36138 5.45910 5.54068 5.63546 5.70875 6.04589 6.23975 6.32299 6.45584 6.70080 6.87099 7.40666 7.41805 8.93467 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009499 B = 0.004656 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.043038 B = 6012.827572 C = 8432.520672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.116 4.116 4 C 0.119 3.881 5 N -0.721 5.721 6 C 0.506 3.494 7 O -0.562 6.562 8 C 0.038 3.962 9 N -0.529 5.529 10 C 0.214 3.786 11 C -0.516 4.516 12 H 0.061 0.939 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.264 1.264 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.144 3.856 20 C -0.013 4.013 21 C -0.212 4.212 22 C -0.227 4.227 23 C -0.038 4.038 24 O -0.188 6.188 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.415 0.585 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.011 0.989 38 H -0.029 1.029 39 H 0.263 0.737 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.133 0.867 43 H 0.167 0.833 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.235 4.179 11.639 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.005 4.005 5 N -0.377 5.377 6 C 0.292 3.708 7 O -0.439 6.439 8 C -0.093 4.093 9 N -0.254 5.254 10 C 0.089 3.911 11 C -0.555 4.555 12 H 0.079 0.921 13 C -0.196 4.196 14 N -0.575 5.575 15 Si 0.791 3.209 16 H -0.188 1.188 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.016 3.984 20 C -0.063 4.063 21 C -0.233 4.233 22 C -0.246 4.246 23 C -0.105 4.105 24 O -0.085 6.085 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.252 0.748 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.029 0.971 38 H -0.012 1.012 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.151 0.849 43 H 0.185 0.815 44 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -16.723 3.250 11.647 20.636 hybrid contribution 0.867 0.195 -0.841 1.224 sum -15.855 3.445 10.806 19.494 Atomic orbital electron populations 1.21736 0.94293 1.02190 1.02332 1.21460 0.97021 0.95574 1.02240 1.21747 0.91129 0.98662 1.03865 1.21368 0.95854 0.82527 1.00720 1.45831 1.06069 1.09622 1.76128 1.20977 0.82641 0.91818 0.75341 1.90738 1.56585 1.47504 1.49029 1.21995 0.90407 0.93409 1.03471 1.61589 1.04059 1.25711 1.34072 1.19394 0.94625 0.93507 0.83572 1.21433 0.93370 1.44786 0.95894 0.92129 1.25858 1.03706 0.95218 0.94797 1.70088 1.37619 1.48175 1.01606 0.85385 0.79296 0.77663 0.78583 1.18767 1.20961 1.19860 1.20347 1.02264 0.89707 0.86050 1.22336 0.88404 0.99974 0.95559 1.21759 1.02770 1.05605 0.93135 1.22110 0.98031 1.05123 0.99305 1.24799 1.00395 1.03915 0.81416 1.83969 1.42084 1.61159 1.21253 0.92322 0.92259 0.92029 0.92325 0.91889 0.89771 0.90297 0.93869 0.93087 0.74803 0.86634 0.91012 0.97057 1.01174 0.92825 0.92619 0.88260 0.84909 0.81523 0.73855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.05 16 2 C -0.12 -1.91 5.93 30.59 0.18 -1.73 16 3 C -0.12 -1.87 5.33 30.59 0.16 -1.70 16 4 C 0.12 3.04 5.67 86.38 0.49 3.53 16 5 N -0.72 -19.66 5.56 -463.07 -2.57 -22.23 16 6 C 0.51 19.68 7.52 87.66 0.66 20.34 16 7 O -0.56 -28.80 14.83 -3.03 -0.04 -28.85 16 8 C 0.04 1.39 5.28 85.56 0.45 1.84 16 9 N -0.53 -24.03 4.05 -909.96 -3.68 -27.71 16 10 C 0.21 11.94 4.33 85.55 0.37 12.31 16 11 C -0.52 -30.59 8.23 25.60 0.21 -30.38 16 12 H 0.06 3.54 7.32 -2.91 -0.02 3.52 16 13 C 0.00 0.11 5.46 84.66 0.46 0.57 16 14 N -0.93 -58.32 13.29 21.45 0.28 -58.03 16 15 Si 0.97 46.30 29.54 68.60 2.03 48.33 16 16 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 17 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 C 0.14 5.65 5.34 85.56 0.46 6.11 16 20 C -0.01 -0.44 6.17 24.83 0.15 -0.29 16 21 C -0.21 -7.32 10.81 22.19 0.24 -7.08 16 22 C -0.23 -5.97 10.91 22.19 0.24 -5.72 16 23 C -0.04 -0.87 12.09 66.97 0.81 -0.06 16 24 O -0.19 -5.51 10.26 -2.47 -0.03 -5.54 16 25 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.42 7.80 8.47 -92.71 -0.79 7.01 16 35 H 0.12 3.51 7.04 -2.39 -0.02 3.49 16 36 H 0.07 2.38 8.05 -2.39 -0.02 2.36 16 37 H 0.01 0.72 6.32 -2.38 -0.02 0.70 16 38 H -0.03 -1.69 8.12 -2.39 -0.02 -1.71 16 39 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.06 1.96 7.99 -2.39 -0.02 1.94 16 41 H 0.10 4.29 6.58 -2.39 -0.02 4.27 16 42 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 43 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 44 H 0.25 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -79.16 367.46 1.78 -77.38 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.19 Total: 19.95 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.60 Total: -3.30 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -5.97 Total: -107.97 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.07 Total: -34.39 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -79.16 1.78 -77.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.117 kcal (2) G-P(sol) polarization free energy of solvation -79.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds