Wall clock time and date at job start Tue Mar 31 2020 07:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 C 1.52995 * 109.46996 * 162.28759 * 3 2 1 5 5 C 1.53001 * 109.47192 * 184.99496 * 4 3 2 6 6 C 1.53003 * 109.46727 * 282.28280 * 3 2 1 7 7 N 1.46499 * 109.47286 * 55.60925 * 6 3 2 8 8 C 1.46501 * 119.99820 * 77.81526 * 7 6 3 9 9 C 1.50694 * 109.47270 * 90.00163 * 8 7 6 10 10 H 1.08003 * 119.99965 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00245 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99626 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99978 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46648 * 90.00505 * 13 11 9 15 15 H 1.48501 * 109.46861 * 210.00162 * 13 11 9 16 16 H 1.48500 * 109.47401 * 330.00505 * 13 11 9 17 17 C 1.34783 * 120.00051 * 257.81669 * 7 6 3 18 18 O 1.21684 * 119.99738 * 185.43219 * 17 7 6 19 19 C 1.46724 * 119.99672 * 5.43295 * 17 7 6 20 20 O 1.35338 * 126.64713 * 4.78811 * 19 17 7 21 21 C 1.33659 * 107.68360 * 179.97438 * 20 19 17 22 22 N 1.30613 * 109.15584 * 359.97438 * 21 20 19 23 23 C 1.33687 * 108.99660 * 359.77116 * 22 21 20 24 24 C 1.50700 * 126.27590 * 180.25899 * 23 22 21 25 25 H 1.09003 * 109.47265 * 189.62170 * 1 2 3 26 26 H 1.08999 * 109.47298 * 309.62938 * 1 2 3 27 27 H 1.09000 * 109.46774 * 69.62824 * 1 2 3 28 28 H 1.08993 * 109.46988 * 239.99405 * 2 1 3 29 29 H 1.09004 * 109.46753 * 119.99640 * 2 1 3 30 30 H 1.08997 * 109.47286 * 42.28126 * 3 2 1 31 31 H 1.09000 * 109.46862 * 304.99387 * 4 3 2 32 32 H 1.09001 * 109.47870 * 64.99228 * 4 3 2 33 33 H 1.08998 * 109.47114 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47462 * 300.00136 * 5 4 3 35 35 H 1.09002 * 109.46653 * 59.99627 * 5 4 3 36 36 H 1.09006 * 109.47067 * 295.60716 * 6 3 2 37 37 H 1.08996 * 109.47364 * 175.60936 * 6 3 2 38 38 H 1.09003 * 109.46802 * 210.00340 * 8 7 6 39 39 H 1.08996 * 109.47338 * 329.99619 * 8 7 6 40 40 H 0.97002 * 119.99604 * 179.97438 * 12 11 9 41 41 H 1.08005 * 125.42004 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.46622 * 270.13289 * 24 23 22 43 43 H 1.08998 * 109.47361 * 30.13458 * 24 23 22 44 44 H 1.09003 * 109.47097 * 150.13712 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5055 1.4653 0.4389 5 6 3.9794 2.9151 0.5591 6 6 1.9206 2.0256 -1.4095 7 7 0.5352 1.9078 -1.8710 8 6 -0.4802 2.8467 -1.3876 9 6 -0.5407 4.0387 -2.3076 10 1 0.1122 4.0918 -3.1663 11 6 -1.4296 5.0616 -2.0532 12 7 -2.2242 4.9971 -1.0073 13 14 -1.5040 6.5395 -3.1932 14 1 -2.4918 6.2831 -4.2720 15 1 -1.9144 7.7399 -2.4213 16 1 -0.1651 6.7703 -3.7926 17 6 0.1947 0.9356 -2.7403 18 8 -0.9313 0.8974 -3.1998 19 6 1.1820 -0.0765 -3.1323 20 8 2.4350 -0.2160 -2.6403 21 6 3.0015 -1.2555 -3.2608 22 7 2.1507 -1.7616 -4.1128 23 6 1.0123 -1.0628 -4.0583 24 6 -0.2296 -1.3166 -4.8733 25 1 -0.3634 -1.0132 0.1718 26 1 -0.3634 0.6554 0.7915 27 1 -0.3633 0.3577 -0.9634 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.4443 2.0385 0.6914 31 1 3.6032 0.9699 1.4048 32 1 4.1143 0.9442 -0.3000 33 1 5.0233 2.9314 0.8722 34 1 3.8816 3.4107 -0.4068 35 1 3.3706 3.4362 1.2980 36 1 2.5768 1.4779 -2.0861 37 1 2.2102 3.0762 -1.3939 38 1 -1.4518 2.3530 -1.3683 39 1 -0.2204 3.1768 -0.3819 40 1 -2.8493 5.7169 -0.8281 41 1 4.0033 -1.6190 -3.0855 42 1 -0.1763 -0.7498 -5.8028 43 1 -0.3044 -2.3801 -5.1001 44 1 -1.1064 -1.0034 -4.3065 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081686034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:11 Heat of formation + Delta-G solvation = -8.804892 kcal Electronic energy + Delta-G solvation = -25776.479321 eV Core-core repulsion = 22310.204162 eV Total energy + Delta-G solvation = -3466.275159 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.39428 -39.49825 -37.17777 -35.15542 -34.12334 -32.57593 -31.69886 -31.37569 -28.42045 -27.95154 -26.61985 -24.51082 -23.81394 -22.72010 -21.73484 -21.22657 -20.02531 -19.38731 -17.20298 -17.00325 -16.53144 -16.33935 -15.62059 -15.06675 -14.49644 -14.36844 -14.12495 -13.93233 -13.43681 -13.25101 -12.96145 -12.91039 -12.60229 -12.43144 -12.33023 -11.99328 -11.97208 -11.45190 -11.34727 -11.31111 -11.04601 -10.87253 -10.76221 -10.69758 -10.55828 -10.34083 -10.28965 -10.08515 -10.03078 -9.57517 -9.34142 -8.74986 -8.47036 -7.67964 -6.08458 -4.13269 1.09329 2.58616 2.67502 3.29372 3.35529 3.37519 3.62568 3.78749 4.15231 4.41890 4.88683 4.91284 4.94922 5.04411 5.26126 5.27018 5.40835 5.49213 5.62402 5.64347 5.69487 5.76368 5.83301 5.84743 5.96643 6.00212 6.03897 6.12099 6.19070 6.25558 6.28306 6.31451 6.44856 6.48264 6.52168 6.69117 6.79956 6.96605 7.32731 7.40826 7.66312 7.87010 8.16409 8.22270 8.71050 8.92727 9.51738 10.99464 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.006537 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.573111 B = 4282.543870 C = 5467.024529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.123 4.123 3 C -0.103 4.103 4 C -0.111 4.111 5 C -0.156 4.156 6 C 0.106 3.894 7 N -0.578 5.578 8 C 0.251 3.749 9 C -0.528 4.528 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.595 3.405 18 O -0.513 6.513 19 C -0.089 4.089 20 O -0.176 6.176 21 C 0.169 3.831 22 N -0.492 5.492 23 C 0.058 3.942 24 C -0.080 4.080 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.037 0.963 40 H 0.264 0.736 41 H 0.248 0.752 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.323 -10.526 1.093 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.160 4.160 3 C -0.123 4.123 4 C -0.149 4.149 5 C -0.213 4.213 6 C -0.017 4.017 7 N -0.308 5.308 8 C 0.133 3.867 9 C -0.567 4.567 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.199 1.199 17 C 0.381 3.619 18 O -0.391 6.391 19 C -0.144 4.144 20 O -0.062 6.062 21 C -0.056 4.056 22 N -0.221 5.221 23 C -0.065 4.065 24 C -0.137 4.137 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.264 0.736 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.714 -10.865 0.635 15.989 hybrid contribution 0.127 1.372 -0.029 1.378 sum 11.841 -9.493 0.606 15.188 Atomic orbital electron populations 1.22242 0.95648 1.00513 1.04054 1.21761 0.96421 0.96230 1.01559 1.21620 0.96066 0.96799 0.97771 1.21493 0.95544 0.97046 1.00859 1.21839 1.00320 0.96762 1.02385 1.21950 0.83166 1.01940 0.94680 1.48256 1.10663 1.29655 1.42206 1.19341 0.86262 0.86476 0.94667 1.21406 1.20937 1.03296 1.11053 0.92394 1.24906 0.95141 0.98430 0.95412 1.69925 1.22744 1.33422 1.27119 0.86510 0.78435 0.81833 0.80730 1.20487 1.21132 1.19938 1.16364 0.85297 0.80120 0.80139 1.90854 1.19326 1.74269 1.54698 1.23560 0.84825 1.03713 1.02343 1.84865 1.24982 1.43213 1.53168 1.28237 1.00472 0.86082 0.90807 1.70272 1.01457 1.29009 1.21401 1.21981 0.95493 0.92021 0.97016 1.20361 0.92220 1.02172 0.98927 0.94134 0.92619 0.90692 0.91414 0.92888 0.90456 0.92228 0.92195 0.93253 0.92238 0.92541 0.89862 0.90060 0.93715 0.94508 0.92664 0.73641 0.90396 0.91002 0.88385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 8.96 37.16 0.33 -2.48 16 2 C -0.12 -1.75 4.99 -26.73 -0.13 -1.89 16 3 C -0.10 -1.48 2.10 -90.62 -0.19 -1.67 16 4 C -0.11 -1.26 5.36 -26.73 -0.14 -1.41 16 5 C -0.16 -1.75 9.67 37.16 0.36 -1.39 16 6 C 0.11 1.77 4.49 -4.04 -0.02 1.75 16 7 N -0.58 -11.94 1.25 -176.59 -0.22 -12.16 16 8 C 0.25 6.28 4.28 -5.20 -0.02 6.25 16 9 C -0.53 -14.60 9.39 -34.44 -0.32 -14.93 16 10 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 13 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 C 0.59 12.36 4.71 -12.83 -0.06 12.30 16 18 O -0.51 -12.26 14.33 5.20 0.07 -12.18 16 19 C -0.09 -1.54 5.87 -36.84 -0.22 -1.75 16 20 O -0.18 -2.43 4.71 4.45 0.02 -2.41 16 21 C 0.17 1.92 13.21 52.24 0.69 2.61 16 22 N -0.49 -7.10 11.26 -10.89 -0.12 -7.22 16 23 C 0.06 0.94 7.16 -82.47 -0.59 0.35 16 24 C -0.08 -1.18 9.92 36.01 0.36 -0.82 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.96 7.94 -51.93 -0.41 0.54 16 27 H 0.07 1.47 2.99 -51.93 -0.16 1.32 16 28 H 0.07 0.97 4.08 -51.93 -0.21 0.76 16 29 H 0.05 0.67 7.95 -51.93 -0.41 0.26 16 30 H 0.08 1.25 7.45 -51.93 -0.39 0.86 16 31 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.71 6.66 -51.93 -0.35 0.36 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.28 4.62 -52.05 -0.24 1.04 16 37 H 0.08 1.41 6.78 -51.93 -0.35 1.06 16 38 H 0.04 1.25 7.43 -51.93 -0.39 0.87 16 39 H 0.04 0.94 7.61 -51.93 -0.39 0.54 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.25 1.38 8.06 -52.48 -0.42 0.96 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.10 1.61 6.39 -51.93 -0.33 1.28 16 LS Contribution 342.20 15.07 5.16 5.16 Total: -1.00 -31.59 342.20 -5.98 -37.57 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.55 Total: 1.26 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -0.06 Total: -1.41 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.39 Total: -44.56 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.10 Total: -14.59 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.59 -5.98 -37.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081686034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.770 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds