Wall clock time and date at job start Tue Mar 31 2020 07:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 C 1.52995 * 109.46996 * 162.28759 * 3 2 1 5 5 C 1.53001 * 109.47192 * 184.99496 * 4 3 2 6 6 C 1.53003 * 109.46727 * 282.28280 * 3 2 1 7 7 N 1.46499 * 109.47286 * 55.60925 * 6 3 2 8 8 C 1.46501 * 119.99820 * 77.81526 * 7 6 3 9 9 C 1.50694 * 109.47270 * 90.00163 * 8 7 6 10 10 H 1.08003 * 119.99965 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00245 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99626 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99978 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46648 * 90.00505 * 13 11 9 15 15 H 1.48501 * 109.46861 * 210.00162 * 13 11 9 16 16 H 1.48500 * 109.47401 * 330.00505 * 13 11 9 17 17 C 1.34783 * 120.00051 * 257.81669 * 7 6 3 18 18 O 1.21684 * 119.99738 * 185.43219 * 17 7 6 19 19 C 1.46724 * 119.99672 * 5.43295 * 17 7 6 20 20 O 1.35338 * 126.64713 * 4.78811 * 19 17 7 21 21 C 1.33659 * 107.68360 * 179.97438 * 20 19 17 22 22 N 1.30613 * 109.15584 * 359.97438 * 21 20 19 23 23 C 1.33687 * 108.99660 * 359.77116 * 22 21 20 24 24 C 1.50700 * 126.27590 * 180.25899 * 23 22 21 25 25 H 1.09003 * 109.47265 * 189.62170 * 1 2 3 26 26 H 1.08999 * 109.47298 * 309.62938 * 1 2 3 27 27 H 1.09000 * 109.46774 * 69.62824 * 1 2 3 28 28 H 1.08993 * 109.46988 * 239.99405 * 2 1 3 29 29 H 1.09004 * 109.46753 * 119.99640 * 2 1 3 30 30 H 1.08997 * 109.47286 * 42.28126 * 3 2 1 31 31 H 1.09000 * 109.46862 * 304.99387 * 4 3 2 32 32 H 1.09001 * 109.47870 * 64.99228 * 4 3 2 33 33 H 1.08998 * 109.47114 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47462 * 300.00136 * 5 4 3 35 35 H 1.09002 * 109.46653 * 59.99627 * 5 4 3 36 36 H 1.09006 * 109.47067 * 295.60716 * 6 3 2 37 37 H 1.08996 * 109.47364 * 175.60936 * 6 3 2 38 38 H 1.09003 * 109.46802 * 210.00340 * 8 7 6 39 39 H 1.08996 * 109.47338 * 329.99619 * 8 7 6 40 40 H 0.97002 * 119.99604 * 179.97438 * 12 11 9 41 41 H 1.08005 * 125.42004 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.46622 * 270.13289 * 24 23 22 43 43 H 1.08998 * 109.47361 * 30.13458 * 24 23 22 44 44 H 1.09003 * 109.47097 * 150.13712 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5055 1.4653 0.4389 5 6 3.9794 2.9151 0.5591 6 6 1.9206 2.0256 -1.4095 7 7 0.5352 1.9078 -1.8710 8 6 -0.4802 2.8467 -1.3876 9 6 -0.5407 4.0387 -2.3076 10 1 0.1122 4.0918 -3.1663 11 6 -1.4296 5.0616 -2.0532 12 7 -2.2242 4.9971 -1.0073 13 14 -1.5040 6.5395 -3.1932 14 1 -2.4918 6.2831 -4.2720 15 1 -1.9144 7.7399 -2.4213 16 1 -0.1651 6.7703 -3.7926 17 6 0.1947 0.9356 -2.7403 18 8 -0.9313 0.8974 -3.1998 19 6 1.1820 -0.0765 -3.1323 20 8 2.4350 -0.2160 -2.6403 21 6 3.0015 -1.2555 -3.2608 22 7 2.1507 -1.7616 -4.1128 23 6 1.0123 -1.0628 -4.0583 24 6 -0.2296 -1.3166 -4.8733 25 1 -0.3634 -1.0132 0.1718 26 1 -0.3634 0.6554 0.7915 27 1 -0.3633 0.3577 -0.9634 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.4443 2.0385 0.6914 31 1 3.6032 0.9699 1.4048 32 1 4.1143 0.9442 -0.3000 33 1 5.0233 2.9314 0.8722 34 1 3.8816 3.4107 -0.4068 35 1 3.3706 3.4362 1.2980 36 1 2.5768 1.4779 -2.0861 37 1 2.2102 3.0762 -1.3939 38 1 -1.4518 2.3530 -1.3683 39 1 -0.2204 3.1768 -0.3819 40 1 -2.8493 5.7169 -0.8281 41 1 4.0033 -1.6190 -3.0855 42 1 -0.1763 -0.7498 -5.8028 43 1 -0.3044 -2.3801 -5.1001 44 1 -1.1064 -1.0034 -4.3065 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081686034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:11 Heat of formation + Delta-G solvation = -29.410817 kcal Electronic energy + Delta-G solvation = -25777.372861 eV Core-core repulsion = 22310.204162 eV Total energy + Delta-G solvation = -3467.168699 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.53698 -41.03490 -38.54550 -36.29395 -35.80782 -34.47473 -32.90685 -32.59163 -30.14501 -29.20884 -28.15062 -25.75166 -25.52363 -24.04782 -22.85121 -22.54849 -21.25894 -20.75546 -18.81884 -18.37634 -18.12108 -17.63776 -17.24963 -16.61416 -16.10927 -15.67561 -15.38141 -15.20633 -14.70678 -14.47322 -14.38106 -14.20359 -14.14342 -13.93216 -13.57897 -13.37553 -13.21609 -13.15986 -13.00877 -12.64205 -12.58066 -12.42233 -12.24195 -12.16560 -11.95693 -11.72131 -11.61704 -11.37980 -11.31997 -11.22623 -10.96318 -10.65326 -10.01368 -9.34243 -8.23424 -6.38059 -0.12608 1.35498 1.38230 1.46160 1.48872 1.49588 2.10957 2.28254 2.41920 3.06198 3.19640 3.60431 3.73146 3.80839 3.90887 4.15120 4.30122 4.39925 4.44443 4.47404 4.54825 4.60884 4.64282 4.67354 4.78191 4.84212 4.89605 4.99672 5.05828 5.10491 5.10600 5.18906 5.19651 5.25276 5.26218 5.38170 5.42241 5.50687 5.53470 5.63711 5.78518 6.03687 6.46153 6.66556 6.70094 7.13647 7.34075 8.83239 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.006537 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.573111 B = 4282.543870 C = 5467.024529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.114 4.114 3 C -0.097 4.097 4 C -0.102 4.102 5 C -0.157 4.157 6 C 0.104 3.896 7 N -0.583 5.583 8 C 0.275 3.725 9 C -0.545 4.545 10 H 0.050 0.950 11 C 0.013 3.987 12 N -0.925 5.925 13 Si 0.963 3.037 14 H -0.279 1.279 15 H -0.274 1.274 16 H -0.264 1.264 17 C 0.594 3.406 18 O -0.562 6.562 19 C -0.120 4.120 20 O -0.175 6.175 21 C 0.213 3.787 22 N -0.516 5.516 23 C 0.066 3.934 24 C -0.081 4.081 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.041 0.959 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.003 0.997 39 H 0.024 0.976 40 H 0.268 0.732 41 H 0.310 0.690 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.821 -11.767 0.701 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.151 4.151 3 C -0.117 4.117 4 C -0.140 4.140 5 C -0.214 4.214 6 C -0.018 4.018 7 N -0.312 5.312 8 C 0.155 3.845 9 C -0.584 4.584 10 H 0.069 0.931 11 C -0.187 4.187 12 N -0.564 5.564 13 Si 0.788 3.212 14 H -0.205 1.205 15 H -0.199 1.199 16 H -0.189 1.189 17 C 0.383 3.617 18 O -0.444 6.444 19 C -0.174 4.174 20 O -0.063 6.063 21 C -0.012 4.012 22 N -0.245 5.245 23 C -0.057 4.057 24 C -0.138 4.138 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.021 0.979 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.325 0.675 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.249 -12.121 0.247 19.481 hybrid contribution -0.885 1.634 0.090 1.861 sum 14.364 -10.486 0.337 17.788 Atomic orbital electron populations 1.22213 0.98159 1.00444 1.01675 1.21720 0.94005 0.96289 1.03063 1.21560 0.98309 0.96297 0.95531 1.21459 0.92895 0.97394 1.02273 1.21845 1.01497 0.96618 1.01439 1.22179 0.81092 1.01880 0.96600 1.48136 1.11374 1.29127 1.42528 1.18676 0.85836 0.86245 0.93766 1.21684 1.21064 1.04436 1.11181 0.93124 1.25777 0.94619 1.01365 0.96901 1.70039 1.23292 1.34466 1.28639 0.85482 0.78714 0.78417 0.78624 1.20521 1.19885 1.18862 1.16689 0.85557 0.80341 0.79123 1.90808 1.21586 1.75611 1.56348 1.22594 0.85965 1.04184 1.04691 1.84791 1.23631 1.44376 1.53470 1.29689 1.01251 0.83017 0.87204 1.70353 1.01277 1.29640 1.23219 1.22181 0.96269 0.91302 0.95934 1.20357 0.91212 1.03622 0.98592 0.93142 0.94218 0.93707 0.90622 0.90321 0.93176 0.90552 0.89910 0.90941 0.93332 0.93973 0.87744 0.91302 0.97927 0.95822 0.92355 0.67519 0.89921 0.88710 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.82 8.96 71.98 0.64 -5.18 16 2 C -0.11 -3.08 4.99 30.60 0.15 -2.93 16 3 C -0.10 -2.73 2.10 -10.79 -0.02 -2.76 16 4 C -0.10 -2.01 5.36 30.59 0.16 -1.84 16 5 C -0.16 -3.23 9.67 71.98 0.70 -2.53 16 6 C 0.10 3.49 4.49 86.38 0.39 3.87 16 7 N -0.58 -25.27 1.25 -830.82 -1.03 -26.30 16 8 C 0.28 14.77 4.28 85.63 0.37 15.14 16 9 C -0.55 -31.56 9.39 25.60 0.24 -31.31 16 10 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 11 C 0.01 0.74 5.46 84.66 0.46 1.20 16 12 N -0.92 -55.70 13.29 21.45 0.28 -55.41 16 13 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 17 C 0.59 25.79 4.71 86.46 0.41 26.20 16 18 O -0.56 -28.78 14.33 -4.30 -0.06 -28.84 16 19 C -0.12 -4.03 5.87 24.05 0.14 -3.89 16 20 O -0.18 -4.28 4.71 -6.98 -0.03 -4.31 16 21 C 0.21 3.73 13.21 130.42 1.72 5.45 16 22 N -0.52 -13.09 11.26 -303.14 -3.41 -16.50 16 23 C 0.07 2.06 7.16 41.83 0.30 2.36 16 24 C -0.08 -2.40 9.92 71.24 0.71 -1.69 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.04 1.45 7.94 -2.39 -0.02 1.43 16 27 H 0.04 1.86 2.99 -2.39 -0.01 1.85 16 28 H 0.08 1.95 4.08 -2.39 -0.01 1.94 16 29 H 0.08 1.75 7.95 -2.39 -0.02 1.73 16 30 H 0.05 1.68 7.45 -2.39 -0.02 1.66 16 31 H 0.08 1.30 8.05 -2.39 -0.02 1.28 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.10 6.66 -2.39 -0.02 1.08 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.11 3.03 4.62 -4.34 -0.02 3.01 16 37 H 0.07 2.44 6.78 -2.39 -0.02 2.43 16 38 H 0.00 0.16 7.43 -2.39 -0.02 0.15 16 39 H 0.02 1.31 7.61 -2.39 -0.02 1.29 16 40 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.31 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.07 2.59 6.39 -2.39 -0.02 2.58 16 Total: -1.00 -74.09 342.20 5.13 -68.96 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.99 Total: 13.19 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 6.37 Total: 2.09 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -4.16 Total: -98.21 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.09 Total: -33.15 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -74.09 5.13 -68.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081686034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.547 kcal (2) G-P(sol) polarization free energy of solvation -74.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds