Wall clock time and date at job start Tue Mar 31 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47318 * 2 1 4 4 N 1.30172 * 126.80292 * 270.02384 * 3 2 1 5 5 O 1.20924 * 111.60656 * 179.97438 * 4 3 2 6 6 C 1.34047 * 111.56319 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.77182 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47444 * 269.96154 * 7 6 5 9 9 C 1.35447 * 106.44898 * 0.02562 * 6 5 4 10 10 C 1.50701 * 128.00779 * 180.26015 * 9 6 5 11 11 C 1.50699 * 109.47112 * 269.67457 * 10 9 6 12 12 O 1.21281 * 119.99931 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00194 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00243 * 179.97438 * 13 11 10 15 15 C 1.52991 * 109.47290 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47536 * 179.97438 * 15 14 13 17 17 C 1.50693 * 109.47409 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00062 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00128 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99997 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00400 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47176 * 59.99697 * 21 19 17 23 23 H 1.48500 * 109.47549 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46878 * 300.00284 * 21 19 17 25 25 H 1.09006 * 109.46927 * 300.00106 * 1 2 3 26 26 H 1.09006 * 109.47281 * 59.99512 * 1 2 3 27 27 H 1.08995 * 109.47528 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47196 * 239.99952 * 2 1 3 29 29 H 1.09002 * 109.47603 * 119.99799 * 2 1 3 30 30 H 1.08998 * 109.47545 * 29.96462 * 7 6 5 31 31 H 1.09001 * 109.47073 * 149.96550 * 7 6 5 32 32 H 1.09001 * 109.46661 * 60.00144 * 8 7 6 33 33 H 1.08995 * 109.47374 * 180.02562 * 8 7 6 34 34 H 1.09007 * 109.46764 * 300.00552 * 8 7 6 35 35 H 1.08997 * 109.47073 * 29.67351 * 10 9 6 36 36 H 1.09002 * 109.47300 * 149.67174 * 10 9 6 37 37 H 0.96997 * 119.99554 * 0.02562 * 13 11 10 38 38 H 1.08997 * 109.47264 * 300.00159 * 14 13 11 39 39 H 1.09002 * 109.47021 * 59.99928 * 14 13 11 40 40 H 1.09006 * 109.47372 * 300.00101 * 15 14 13 41 41 H 1.09002 * 109.47051 * 60.00064 * 15 14 13 42 42 H 1.08997 * 109.47174 * 300.00373 * 16 15 14 43 43 H 1.09007 * 109.46892 * 60.00489 * 16 15 14 44 44 H 0.96999 * 119.99876 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2919 2.1562 -1.0423 5 8 2.6805 3.2565 -0.7253 6 6 2.7297 3.3968 0.6069 7 6 3.1620 4.6225 1.3696 8 6 4.6685 4.5570 1.6289 9 6 2.3142 2.2195 1.1321 10 6 2.1774 1.8490 2.5864 11 6 3.4699 1.2477 3.0754 12 8 4.4094 1.1311 2.3174 13 7 3.5817 0.8396 4.3550 14 6 4.8380 0.2546 4.8301 15 6 4.6996 -0.1202 6.3070 16 6 6.0114 -0.7317 6.8031 17 6 5.8752 -1.1004 8.2579 18 1 4.9459 -0.9173 8.7767 19 6 6.9371 -1.6715 8.9267 20 7 8.0691 -1.8940 8.2951 21 14 6.7682 -2.1291 10.7298 22 1 5.6709 -3.1169 10.8891 23 1 8.0419 -2.7214 11.2117 24 1 6.4577 -0.9123 11.5223 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.9323 5.5137 0.7856 31 1 2.6312 4.6646 2.3207 32 1 5.1993 4.5149 0.6778 33 1 4.9810 5.4433 2.1810 34 1 4.8981 3.6657 2.2130 35 1 1.9487 2.7415 3.1688 36 1 1.3723 1.1233 2.7024 37 1 2.8302 0.9325 4.9611 38 1 5.0661 -0.6382 4.2481 39 1 5.6434 0.9798 4.7137 40 1 4.4718 0.7730 6.8888 41 1 3.8941 -0.8453 6.4238 42 1 6.2388 -1.6249 6.2213 43 1 6.8172 -0.0070 6.6862 44 1 8.8162 -2.2955 8.7657 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087249414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:38 Heat of formation + Delta-G solvation = -16.859889 kcal Electronic energy + Delta-G solvation = -23350.445708 eV Core-core repulsion = 19883.821258 eV Total energy + Delta-G solvation = -3466.624450 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.00637 -39.57816 -36.10783 -35.36766 -35.01743 -33.35638 -32.17306 -31.33599 -30.69360 -28.81754 -26.52704 -24.80232 -23.93017 -23.21026 -21.84332 -20.77064 -20.13512 -19.69124 -17.71970 -17.17168 -16.75309 -16.43733 -15.76392 -15.55554 -15.08269 -14.73234 -14.47062 -14.38633 -14.06208 -13.85012 -13.48827 -13.23220 -12.98435 -12.73397 -12.46778 -12.30555 -11.99387 -11.86815 -11.78065 -11.60152 -11.56084 -11.34826 -10.90884 -10.88638 -10.77240 -10.65313 -10.12301 -9.90408 -9.86424 -9.47621 -9.23645 -9.11670 -8.82906 -8.39904 -6.04550 -4.08042 1.36470 2.07336 2.71180 2.96581 3.29706 3.34754 3.35953 3.43643 4.00292 4.22292 4.41680 4.53812 4.63357 4.80898 4.88248 4.95244 4.99959 5.04795 5.10519 5.15912 5.25374 5.31126 5.46273 5.55929 5.61822 5.62679 5.68050 5.73014 5.76815 5.80050 5.86693 6.01813 6.10776 6.11683 6.43354 6.55179 6.78460 6.96144 7.59773 7.65031 7.72288 7.93771 8.20641 8.32519 8.36351 8.98490 9.56316 11.06683 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023523 B = 0.002674 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.051397 B =10468.579994 C =11126.066893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.048 4.048 3 C 0.039 3.961 4 N -0.368 5.368 5 O 0.096 5.904 6 C -0.016 4.016 7 C -0.041 4.041 8 C -0.153 4.153 9 C -0.177 4.177 10 C -0.065 4.065 11 C 0.507 3.493 12 O -0.533 6.533 13 N -0.727 5.727 14 C 0.117 3.883 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.398 0.602 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.051 11.258 -13.935 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.121 4.121 4 N -0.074 5.074 5 O 0.032 5.968 6 C -0.079 4.079 7 C -0.079 4.079 8 C -0.210 4.210 9 C -0.181 4.181 10 C -0.105 4.105 11 C 0.292 3.708 12 O -0.409 6.409 13 N -0.378 5.378 14 C -0.005 4.005 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.232 0.768 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.223 10.901 -15.793 24.495 hybrid contribution -0.312 -0.403 2.117 2.177 sum -15.535 10.498 -13.676 23.207 Atomic orbital electron populations 1.21723 0.93938 1.02342 1.02281 1.19938 0.96175 0.88395 1.04078 1.23305 1.01542 0.98851 0.88359 1.73794 1.16870 0.92802 1.23890 1.84780 1.62788 1.26843 1.22387 1.24195 1.01139 0.98821 0.83786 1.20121 0.97932 0.91596 0.98264 1.21798 0.93260 1.03179 1.02770 1.20179 1.08404 0.93608 0.95917 1.19925 0.97241 1.02806 0.90528 1.20425 0.89475 0.78692 0.82235 1.90728 1.40228 1.54956 1.55004 1.46208 1.17250 1.63177 1.11142 1.21636 0.84543 0.97829 0.96531 1.21886 1.02171 1.00365 0.91428 1.19020 0.90541 0.95922 0.95863 1.21162 0.98656 1.40767 0.95654 0.92692 1.25031 0.95340 0.95763 0.98296 1.69955 1.03053 1.43643 1.36610 0.86642 0.77324 0.78764 0.85160 1.20229 1.21253 1.20231 0.92357 0.92473 0.91560 0.90030 0.89619 0.89506 0.88846 0.92133 0.91414 0.91261 0.87733 0.87673 0.76803 0.91843 0.91816 0.92711 0.92731 0.96318 0.96313 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.89 37.15 0.37 -0.77 16 2 C -0.05 -0.49 6.44 -27.89 -0.18 -0.67 16 3 C 0.04 0.49 6.58 -82.10 -0.54 -0.05 16 4 N -0.37 -5.18 12.07 33.42 0.40 -4.77 16 5 O 0.10 1.25 11.20 17.16 0.19 1.44 16 6 C -0.02 -0.18 6.74 -35.31 -0.24 -0.41 16 7 C -0.04 -0.33 6.35 -27.88 -0.18 -0.50 16 8 C -0.15 -1.43 9.90 37.16 0.37 -1.06 16 9 C -0.18 -2.05 4.81 -104.42 -0.50 -2.55 16 10 C -0.06 -0.60 6.03 -29.03 -0.17 -0.77 16 11 C 0.51 6.72 7.82 -10.99 -0.09 6.64 16 12 O -0.53 -9.45 15.46 5.56 0.09 -9.37 16 13 N -0.73 -9.30 5.56 -60.30 -0.33 -9.63 16 14 C 0.12 1.96 5.67 -4.05 -0.02 1.93 16 15 C -0.12 -2.25 5.27 -26.74 -0.14 -2.39 16 16 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 17 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 18 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.57 7.44 -51.93 -0.39 0.18 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.84 7.56 -51.93 -0.39 0.45 16 35 H 0.10 0.68 7.44 -51.93 -0.39 0.30 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 3.86 8.47 -40.82 -0.35 3.52 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 372.58 15.07 5.61 5.61 Total: -1.00 -33.76 372.58 -7.59 -41.35 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.39 Total: -1.63 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.88 Total: -13.34 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.80 Total: -40.26 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.28 Total: -7.92 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.76 -7.59 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087249414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.494 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds