Wall clock time and date at job start Tue Mar 31 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47318 * 2 1 4 4 N 1.30172 * 126.80292 * 270.02384 * 3 2 1 5 5 O 1.20924 * 111.60656 * 179.97438 * 4 3 2 6 6 C 1.34047 * 111.56319 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.77182 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47444 * 269.96154 * 7 6 5 9 9 C 1.35447 * 106.44898 * 0.02562 * 6 5 4 10 10 C 1.50701 * 128.00779 * 180.26015 * 9 6 5 11 11 C 1.50699 * 109.47112 * 269.67457 * 10 9 6 12 12 O 1.21281 * 119.99931 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00194 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00243 * 179.97438 * 13 11 10 15 15 C 1.52991 * 109.47290 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47536 * 179.97438 * 15 14 13 17 17 C 1.50693 * 109.47409 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00062 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00128 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99997 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00400 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47176 * 59.99697 * 21 19 17 23 23 H 1.48500 * 109.47549 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46878 * 300.00284 * 21 19 17 25 25 H 1.09006 * 109.46927 * 300.00106 * 1 2 3 26 26 H 1.09006 * 109.47281 * 59.99512 * 1 2 3 27 27 H 1.08995 * 109.47528 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47196 * 239.99952 * 2 1 3 29 29 H 1.09002 * 109.47603 * 119.99799 * 2 1 3 30 30 H 1.08998 * 109.47545 * 29.96462 * 7 6 5 31 31 H 1.09001 * 109.47073 * 149.96550 * 7 6 5 32 32 H 1.09001 * 109.46661 * 60.00144 * 8 7 6 33 33 H 1.08995 * 109.47374 * 180.02562 * 8 7 6 34 34 H 1.09007 * 109.46764 * 300.00552 * 8 7 6 35 35 H 1.08997 * 109.47073 * 29.67351 * 10 9 6 36 36 H 1.09002 * 109.47300 * 149.67174 * 10 9 6 37 37 H 0.96997 * 119.99554 * 0.02562 * 13 11 10 38 38 H 1.08997 * 109.47264 * 300.00159 * 14 13 11 39 39 H 1.09002 * 109.47021 * 59.99928 * 14 13 11 40 40 H 1.09006 * 109.47372 * 300.00101 * 15 14 13 41 41 H 1.09002 * 109.47051 * 60.00064 * 15 14 13 42 42 H 1.08997 * 109.47174 * 300.00373 * 16 15 14 43 43 H 1.09007 * 109.46892 * 60.00489 * 16 15 14 44 44 H 0.96999 * 119.99876 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2919 2.1562 -1.0423 5 8 2.6805 3.2565 -0.7253 6 6 2.7297 3.3968 0.6069 7 6 3.1620 4.6225 1.3696 8 6 4.6685 4.5570 1.6289 9 6 2.3142 2.2195 1.1321 10 6 2.1774 1.8490 2.5864 11 6 3.4699 1.2477 3.0754 12 8 4.4094 1.1311 2.3174 13 7 3.5817 0.8396 4.3550 14 6 4.8380 0.2546 4.8301 15 6 4.6996 -0.1202 6.3070 16 6 6.0114 -0.7317 6.8031 17 6 5.8752 -1.1004 8.2579 18 1 4.9459 -0.9173 8.7767 19 6 6.9371 -1.6715 8.9267 20 7 8.0691 -1.8940 8.2951 21 14 6.7682 -2.1291 10.7298 22 1 5.6709 -3.1169 10.8891 23 1 8.0419 -2.7214 11.2117 24 1 6.4577 -0.9123 11.5223 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.9323 5.5137 0.7856 31 1 2.6312 4.6646 2.3207 32 1 5.1993 4.5149 0.6778 33 1 4.9810 5.4433 2.1810 34 1 4.8981 3.6657 2.2130 35 1 1.9487 2.7415 3.1688 36 1 1.3723 1.1233 2.7024 37 1 2.8302 0.9325 4.9611 38 1 5.0661 -0.6382 4.2481 39 1 5.6434 0.9798 4.7137 40 1 4.4718 0.7730 6.8888 41 1 3.8941 -0.8453 6.4238 42 1 6.2388 -1.6249 6.2213 43 1 6.8172 -0.0070 6.6862 44 1 8.8162 -2.2955 8.7657 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087249414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:38 Heat of formation + Delta-G solvation = -38.159224 kcal Electronic energy + Delta-G solvation = -23351.369316 eV Core-core repulsion = 19883.821258 eV Total energy + Delta-G solvation = -3467.548058 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.91654 -40.69801 -37.17776 -36.60036 -35.81472 -35.16090 -33.25100 -32.67664 -31.63451 -29.86140 -28.18235 -25.56977 -25.12344 -24.46065 -22.88393 -22.28306 -21.23522 -20.63888 -18.67385 -18.54535 -18.02168 -17.76148 -16.85058 -16.77257 -16.42710 -16.07881 -15.64637 -15.20896 -15.08821 -14.80108 -14.50960 -14.21212 -14.05076 -13.77455 -13.73300 -13.62445 -13.41244 -13.10857 -12.70734 -12.65812 -12.53908 -12.39856 -12.38255 -12.30343 -12.06386 -11.66264 -11.64181 -11.57515 -11.24883 -11.05716 -10.74281 -10.54131 -10.10451 -10.04696 -8.18779 -6.30484 0.49432 1.16993 1.42630 1.45478 1.53347 1.68390 2.16508 2.35305 2.45271 3.15095 3.17389 3.44386 3.74534 3.88207 4.02117 4.11701 4.22064 4.23777 4.27270 4.30748 4.33722 4.42720 4.46395 4.57309 4.58773 4.74554 4.86779 4.96219 4.96682 4.96735 5.01251 5.05393 5.09453 5.15709 5.19310 5.30245 5.35589 5.47433 5.55339 5.72123 5.85269 6.22902 6.64738 6.87668 7.31339 7.33385 7.39489 8.93150 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023523 B = 0.002674 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.051397 B =10468.579994 C =11126.066893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C 0.028 3.972 4 N -0.401 5.401 5 O 0.079 5.921 6 C -0.017 4.017 7 C -0.039 4.039 8 C -0.149 4.149 9 C -0.191 4.191 10 C -0.054 4.054 11 C 0.507 3.493 12 O -0.583 6.583 13 N -0.713 5.713 14 C 0.132 3.868 15 C -0.101 4.101 16 C 0.023 3.977 17 C -0.541 4.541 18 H 0.068 0.932 19 C -0.004 4.004 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.265 1.265 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.038 0.962 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.418 0.582 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.069 0.931 42 H -0.011 1.011 43 H -0.010 1.010 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.805 12.254 -12.100 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.131 4.131 4 N -0.109 5.109 5 O 0.018 5.982 6 C -0.080 4.080 7 C -0.077 4.077 8 C -0.207 4.207 9 C -0.195 4.195 10 C -0.094 4.094 11 C 0.295 3.705 12 O -0.463 6.463 13 N -0.365 5.365 14 C 0.008 3.992 15 C -0.139 4.139 16 C -0.015 4.015 17 C -0.579 4.579 18 H 0.087 0.913 19 C -0.202 4.202 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.190 1.190 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.140 0.860 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.161 0.839 36 H 0.153 0.847 37 H 0.256 0.744 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.007 0.993 43 H 0.009 0.991 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.029 11.924 -13.941 25.721 hybrid contribution 0.601 -0.702 1.493 1.756 sum -17.428 11.223 -12.448 24.179 Atomic orbital electron populations 1.21685 0.91891 1.03459 1.02478 1.20044 0.97900 0.87131 1.03718 1.23815 1.00933 0.99708 0.88661 1.73777 1.18509 0.93533 1.25087 1.84733 1.63122 1.26703 1.23611 1.24873 0.99929 1.00024 0.83195 1.20333 0.96809 0.91060 0.99466 1.21754 0.94485 1.02687 1.01776 1.20503 1.08709 0.93513 0.96805 1.20014 0.95202 1.04883 0.89275 1.21139 0.90290 0.77591 0.81482 1.90724 1.42403 1.56883 1.56268 1.45930 1.16365 1.62581 1.11656 1.21158 0.86111 0.96823 0.95155 1.21586 0.98941 1.00879 0.92461 1.18943 0.93060 0.94355 0.95116 1.21674 0.99129 1.40277 0.96821 0.91340 1.26036 0.94954 0.95741 1.03430 1.70111 1.04040 1.44810 1.38733 0.85477 0.77422 0.78947 0.79062 1.18962 1.21353 1.18895 0.91105 0.93284 0.89967 0.90902 0.89451 0.87249 0.86047 0.93551 0.89189 0.94304 0.83940 0.84721 0.74440 0.93816 0.93535 0.91073 0.91254 0.99266 0.99148 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.05 -0.98 6.44 29.85 0.19 -0.79 16 3 C 0.03 0.69 6.58 43.58 0.29 0.98 16 4 N -0.40 -11.46 12.07 -49.55 -0.60 -12.06 16 5 O 0.08 2.09 11.20 71.56 0.80 2.89 16 6 C -0.02 -0.35 6.74 25.04 0.17 -0.18 16 7 C -0.04 -0.53 6.35 29.85 0.19 -0.34 16 8 C -0.15 -2.66 9.90 71.98 0.71 -1.95 16 9 C -0.19 -4.12 4.81 -19.73 -0.10 -4.21 16 10 C -0.05 -0.83 6.03 29.10 0.18 -0.65 16 11 C 0.51 12.64 7.82 87.66 0.69 13.33 16 12 O -0.58 -20.87 15.46 -3.03 -0.05 -20.91 16 13 N -0.71 -16.74 5.56 -463.08 -2.57 -19.31 16 14 C 0.13 4.38 5.67 86.38 0.49 4.87 16 15 C -0.10 -3.66 5.27 30.59 0.16 -3.50 16 16 C 0.02 1.17 4.97 29.85 0.15 1.32 16 17 C -0.54 -29.60 9.11 25.60 0.23 -29.36 16 18 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 19 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 20 N -0.94 -56.92 13.29 21.45 0.28 -56.63 16 21 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 25 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.12 0.97 7.44 -2.39 -0.02 0.96 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.04 0.93 7.56 -2.38 -0.02 0.91 16 35 H 0.14 1.13 7.44 -2.39 -0.02 1.12 16 36 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.42 6.56 8.47 -92.71 -0.79 5.77 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 41 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 42 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 43 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 44 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -76.88 372.58 4.62 -72.27 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.20 Total: 10.14 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 4.52 Total: -21.46 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -2.89 Total: -88.00 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.75 Total: -18.02 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -76.88 4.62 -72.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087249414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.107 kcal (2) G-P(sol) polarization free energy of solvation -76.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds